build: refresh js files

lib/analyze-action.js

@@ -200,11 +200,12 @@ async function run() {
         await (0, analyze_1.warnIfGoInstalledAfterInit)(config, logger);
         await runAutobuildIfLegacyGoWorkflow(config, logger);
         dbCreationTimings = await (0, analyze_1.runFinalize)(outputDir, threads, memory, codeql, config, logger);
+        const cleanupLevel = actionsUtil.getOptionalInput("cleanup-level") || "brutal";
         if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
-            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, diffRangePackDir, actionsUtil.getOptionalInput("category"), config, logger, features);
+            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, cleanupLevel, diffRangePackDir, actionsUtil.getOptionalInput("category"), config, logger, features);
         }
-        if (actionsUtil.getOptionalInput("cleanup-level") !== "none") {
+        if (cleanupLevel !== "none") {
-            await (0, analyze_1.runCleanup)(config, actionsUtil.getOptionalInput("cleanup-level") || "brutal", logger);
+            await (0, analyze_1.runCleanup)(config, cleanupLevel, logger);
         }
         const dbLocations = {};
         for (const language of config.languages) {

lib/analyze.js

@@ -375,20 +375,21 @@ extensions:
     return diffRangeDir;
 }
 // Runs queries and creates sarif files in the given folder
-async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, diffRangePackDir, automationDetailsId, config, logger, features) {
+async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, cleanupLevel, diffRangePackDir, automationDetailsId, config, logger, features) {
     const statusReport = {};
+    const queryFlags = [memoryFlag, threadsFlag];
+    if (cleanupLevel !== "overlay") {
+        queryFlags.push("--expect-discarded-cache");
+    }
     statusReport.analysis_is_diff_informed = diffRangePackDir !== undefined;
-    const dataExtensionFlags = diffRangePackDir
+    if (diffRangePackDir) {
-        ? [
+        queryFlags.push(`--additional-packs=${diffRangePackDir}`);
-            `--additional-packs=${diffRangePackDir}`,
+        queryFlags.push("--extension-packs=codeql-action/pr-diff-range");
-            "--extension-packs=codeql-action/pr-diff-range",
+    }
-        ]
-        : [];
     const sarifRunPropertyFlag = diffRangePackDir
         ? "--sarif-run-property=incrementalMode=diff-informed"
         : undefined;
     const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-    const queryFlags = [memoryFlag, threadsFlag, ...dataExtensionFlags];
     for (const language of config.languages) {
         try {
             const sarifFile = path.join(sarifFolder, `${language}.sarif`);

lib/analyze.test.js

@@ -114,7 +114,7 @@ const util = __importStar(require("./util"));
             fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
                 recursive: true,
             });
-            const statusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
+            const statusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, "brutal", undefined, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
             t.deepEqual(Object.keys(statusReport).sort(), [
                 "analysis_is_diff_informed",
                 `analyze_builtin_queries_${language}_duration_ms`,

lib/codeql.js

@@ -55,6 +55,7 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const git_utils_1 = require("./git-utils");
 const languages_1 = require("./languages");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const setupCodeql = __importStar(require("./setup-codeql"));
 const tools_features_1 = require("./tools-features");
 const tracer_config_1 = require("./tracer-config");
@@ -254,7 +255,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         async supportsFeature(feature) {
             return (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), feature);
         },
-        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger) {
+        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, overlayDatabaseMode, logger) {
             const extraArgs = config.languages.map((language) => `--language=${language}`);
             if (await (0, tracer_config_1.shouldEnableIndirectTracing)(codeql, config)) {
                 extraArgs.push("--begin-tracing");
@@ -290,10 +291,18 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             const overwriteFlag = (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), tools_features_1.ToolsFeature.ForceOverwrite)
                 ? "--force-overwrite"
                 : "--overwrite";
+            if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
+                extraArgs.push("--overlay");
+            }
+            else if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.OverlayBase) {
+                extraArgs.push("--overlay-base");
+            }
             await runCli(cmd, [
                 "database",
                 "init",
-                overwriteFlag,
+                ...(overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay
+                    ? []
+                    : [overwriteFlag]),
                 "--db-cluster",
                 config.dbLocation,
                 `--source-root=${sourceRoot}`,
@@ -458,7 +467,6 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 "run-queries",
                 ...flags,
                 databasePath,
-                "--expect-discarded-cache",
                 "--intra-layer-parallelism",
                 "--min-disk-free=1024", // Try to leave at least 1GB free
                 "-v",

lib/codeql.test.js

@@ -53,6 +53,7 @@ const defaults = __importStar(require("./defaults.json"));
 const doc_url_1 = require("./doc-url");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const setup_codeql_1 = require("./setup-codeql");
 const testing_utils_1 = require("./testing-utils");
 const tools_features_1 = require("./tools-features");
@@ -335,7 +336,7 @@ const injectedConfigMacro = ava_1.default.macro({
                 tempDir,
                 augmentationProperties,
             };
-            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, (0, logging_1.getRunnerLogger)(true));
+            await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
             const args = runnerConstructorStub.firstCall.args[1];
             // should have used an config file
             const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
@@ -471,7 +472,7 @@ const injectedConfigMacro = ava_1.default.macro({
         const runnerConstructorStub = stubToolRunnerConstructor();
         const codeqlObject = await codeql.getCodeQLForTesting();
         sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.17.6"));
-        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", (0, logging_1.getRunnerLogger)(true));
+        await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, "/path/to/qlconfig.yml", overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
         const args = runnerConstructorStub.firstCall.args[1];
         // should have used a config file
         const hasCodeScanningConfigArg = args.some((arg) => arg.startsWith("--codescanning-config="));
@@ -487,7 +488,7 @@ const injectedConfigMacro = ava_1.default.macro({
         const codeqlObject = await codeql.getCodeQLForTesting();
         sinon.stub(codeqlObject, "getVersion").resolves((0, testing_utils_1.makeVersionInfo)("2.17.6"));
         await codeqlObject.databaseInitCluster({ ...stubConfig, tempDir }, "", undefined, undefined, // undefined qlconfigFile
-        (0, logging_1.getRunnerLogger)(true));
+        overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(true));
         const args = runnerConstructorStub.firstCall.args[1];
         const hasQlconfigArg = args.some((arg) => arg.startsWith("--qlconfig-file="));
         t.false(hasQlconfigArg, "should NOT have injected a qlconfig");
@@ -612,7 +613,7 @@ for (const { codeqlVersion, flagPassed, githubVersion, negativeFlagPassed, } of
     sinon.stub(io, "which").resolves("");
     await t.throwsAsync(async () => await codeqlObject.databaseRunQueries(stubConfig.dbLocation, []), {
         instanceOf: cli_errors_1.CliError,
-        message: `Encountered a fatal error while running "codeql-for-testing database run-queries  --expect-discarded-cache --intra-layer-parallelism --min-disk-free=1024 -v". Exit code was 1 and error was: Oops! A fatal internal error occurred. Details:
+        message: `Encountered a fatal error while running "codeql-for-testing database run-queries  --intra-layer-parallelism --min-disk-free=1024 -v". Exit code was 1 and error was: Oops! A fatal internal error occurred. Details:
     com.semmle.util.exception.CatastrophicError: An error occurred while evaluating ControlFlowGraph::ControlFlow::Root.isRootOf/1#dispred#f610e6ed/2@86282cc8
     Severe disk cache trouble (corruption or out of space) at /home/runner/work/_temp/codeql_databases/go/db-go/default/cache/pages/28/33.pack: Failed to write item to disk. See the logs for more details.`,
     });
@@ -638,7 +639,7 @@ for (const { codeqlVersion, flagPassed, githubVersion, negativeFlagPassed, } of
     sinon.stub(io, "which").resolves("");
     process.env["CODEQL_ACTION_EXTRA_OPTIONS"] =
         '{ "database": { "init": ["--overwrite"] } }';
-    await codeqlObject.databaseInitCluster(stubConfig, "sourceRoot", undefined, undefined, (0, logging_1.getRunnerLogger)(false));
+    await codeqlObject.databaseInitCluster(stubConfig, "sourceRoot", undefined, undefined, overlay_database_utils_1.OverlayDatabaseMode.None, (0, logging_1.getRunnerLogger)(false));
     t.true(runnerConstructorStub.calledOnce);
     const args = runnerConstructorStub.firstCall.args[1];
     t.is(args.filter((option) => option === "--overwrite").length, 1, "--overwrite should only be passed once");

lib/git-utils.js

@@ -33,7 +33,7 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.decodeGitFilePath = exports.getGitDiffHunkHeaders = exports.getAllGitMergeBases = exports.gitRepack = exports.gitFetch = exports.deepenGitHistory = exports.determineBaseBranchHeadCommitOid = exports.getCommitOid = void 0;
+exports.getGitRoot = exports.decodeGitFilePath = exports.getGitDiffHunkHeaders = exports.getAllGitMergeBases = exports.gitRepack = exports.gitFetch = exports.deepenGitHistory = exports.determineBaseBranchHeadCommitOid = exports.getCommitOid = void 0;
 exports.getRef = getRef;
 exports.isAnalyzingDefaultBranch = isAnalyzingDefaultBranch;
 const core = __importStar(require("@actions/core"));
@@ -285,6 +285,23 @@ const decodeGitFilePath = function (filePath) {
     return filePath;
 };
 exports.decodeGitFilePath = decodeGitFilePath;
+/**
+ * Get the root of the Git repository.
+ *
+ * @param sourceRoot The source root of the code being analyzed.
+ * @returns The root of the Git repository.
+ */
+const getGitRoot = async function (sourceRoot) {
+    try {
+        const stdout = await runGitCommand(sourceRoot, ["rev-parse", "--show-toplevel"], `Cannot find Git repository root from the source root ${sourceRoot}.`);
+        return stdout.trim();
+    }
+    catch {
+        // Errors are already logged by runGitCommand()
+        return undefined;
+    }
+};
+exports.getGitRoot = getGitRoot;
 function getRefFromEnv() {
     // To workaround a limitation of Actions dynamic workflows not setting
     // the GITHUB_REF in some cases, we accept also the ref within the

lib/init-action.js

@@ -50,6 +50,7 @@ const feature_flags_1 = require("./feature-flags");
 const init_1 = require("./init");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
 const setup_codeql_1 = require("./setup-codeql");
 const status_report_1 = require("./status-report");
@@ -228,7 +229,12 @@ async function run() {
         return;
     }
     try {
-        (0, init_1.cleanupDatabaseClusterDirectory)(config, logger);
+        const sourceRoot = path.resolve((0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), (0, actions_util_1.getOptionalInput)("source-root") || "");
+        const overlayDatabaseMode = await (0, init_1.getOverlayDatabaseMode)((await codeql.getVersion()).version, config, sourceRoot, logger);
+        logger.info(`Using overlay database mode: ${overlayDatabaseMode}`);
+        if (overlayDatabaseMode !== overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
+            (0, init_1.cleanupDatabaseClusterDirectory)(config, logger);
+        }
         if (zstdAvailability) {
             await recordZstdAvailability(config, zstdAvailability);
         }
@@ -408,8 +414,7 @@ async function run() {
                 core.exportVariable("CODEQL_EXTRACTOR_PYTHON_EXTRACT_STDLIB", "true");
             }
         }
-        const sourceRoot = path.resolve((0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE"), (0, actions_util_1.getOptionalInput)("source-root") || "");
+        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", (0, actions_util_1.getOptionalInput)("registries"), apiDetails, overlayDatabaseMode, logger);
-        const tracerConfig = await (0, init_1.runInit)(codeql, config, sourceRoot, "Runner.Worker.exe", (0, actions_util_1.getOptionalInput)("registries"), apiDetails, logger);
         if (tracerConfig !== undefined) {
             for (const [key, value] of Object.entries(tracerConfig.env)) {
                 core.exportVariable(key, value);

lib/init.js

@@ -35,6 +35,7 @@ var __importStar = (this && this.__importStar) || (function () {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.initCodeQL = initCodeQL;
 exports.initConfig = initConfig;
+exports.getOverlayDatabaseMode = getOverlayDatabaseMode;
 exports.runInit = runInit;
 exports.printPathFiltersWarning = printPathFiltersWarning;
 exports.checkInstallPython311 = checkInstallPython311;
@@ -43,10 +44,13 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const io = __importStar(require("@actions/io"));
+const semver = __importStar(require("semver"));
 const actions_util_1 = require("./actions-util");
 const codeql_1 = require("./codeql");
 const configUtils = __importStar(require("./config-utils"));
+const git_utils_1 = require("./git-utils");
 const languages_1 = require("./languages");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const tools_features_1 = require("./tools-features");
 const tracer_config_1 = require("./tracer-config");
 const util = __importStar(require("./util"));
@@ -73,7 +77,33 @@ async function initConfig(inputs, codeql) {
     logger.endGroup();
     return config;
 }
-async function runInit(codeql, config, sourceRoot, processName, registriesInput, apiDetails, logger) {
+async function getOverlayDatabaseMode(codeqlVersion, config, sourceRoot, logger) {
+    const overlayDatabaseMode = process.env.CODEQL_OVERLAY_DATABASE_MODE;
+    if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay ||
+        overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.OverlayBase) {
+        if (config.buildMode !== util.BuildMode.None) {
+            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+                `build-mode is set to "${config.buildMode}" instead of "none". ` +
+                "Falling back to creating a normal full database instead.");
+            return overlay_database_utils_1.OverlayDatabaseMode.None;
+        }
+        if (semver.lt(codeqlVersion, overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION)) {
+            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+                `the CodeQL CLI is older than ${overlay_database_utils_1.CODEQL_OVERLAY_MINIMUM_VERSION}. ` +
+                "Falling back to creating a normal full database instead.");
+            return overlay_database_utils_1.OverlayDatabaseMode.None;
+        }
+        if ((await (0, git_utils_1.getGitRoot)(sourceRoot)) === undefined) {
+            logger.warning(`Cannot build an ${overlayDatabaseMode} database because ` +
+                `the source root "${sourceRoot}" is not inside a git repository. ` +
+                "Falling back to creating a normal full database instead.");
+            return overlay_database_utils_1.OverlayDatabaseMode.None;
+        }
+        return overlayDatabaseMode;
+    }
+    return overlay_database_utils_1.OverlayDatabaseMode.None;
+}
+async function runInit(codeql, config, sourceRoot, processName, registriesInput, apiDetails, overlayDatabaseMode, logger) {
     fs.mkdirSync(config.dbLocation, { recursive: true });
     const { registriesAuthTokens, qlconfigFile } = await configUtils.generateRegistries(registriesInput, config.tempDir, logger);
     await configUtils.wrapEnvironment({
@@ -81,7 +111,7 @@ async function runInit(codeql, config, sourceRoot, processName, registriesInput,
         CODEQL_REGISTRIES_AUTH: registriesAuthTokens,
     }, 
     // Init a database cluster
-    async () => await codeql.databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger));
+    async () => await codeql.databaseInitCluster(config, sourceRoot, processName, qlconfigFile, overlayDatabaseMode, logger));
     return await (0, tracer_config_1.getCombinedTracerConfig)(codeql, config);
 }
 function printPathFiltersWarning(config, logger) {

lib/init.js.map

@@ -1 +1 @@
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lib/overlay-database-utils.js

@@ -0,0 +1,11 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CODEQL_OVERLAY_MINIMUM_VERSION = exports.OverlayDatabaseMode = void 0;
+var OverlayDatabaseMode;
+(function (OverlayDatabaseMode) {
+    OverlayDatabaseMode["Overlay"] = "overlay";
+    OverlayDatabaseMode["OverlayBase"] = "overlay-base";
+    OverlayDatabaseMode["None"] = "none";
+})(OverlayDatabaseMode || (exports.OverlayDatabaseMode = OverlayDatabaseMode = {}));
+exports.CODEQL_OVERLAY_MINIMUM_VERSION = "2.20.5";
+//# sourceMappingURL=overlay-database-utils.js.map

lib/overlay-database-utils.js.map

@@ -0,0 +1 @@
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