diff --git a/lib/init-action.js b/lib/init-action.js
index 8ff16f454..0bc5e10eb 100644
--- a/lib/init-action.js
+++ b/lib/init-action.js
@@ -86455,11 +86455,9 @@ function combineQueries(logger, config, augmentationProperties) {
       `Found query configuration in the repository properties (${"github-codeql-extra-queries" /* EXTRA_QUERIES */}): ${augmentationProperties.repoPropertyQueries.input.map((q) => q.uses).join(", ")}`
     );
     if (!augmentationProperties.repoPropertyQueries.combines) {
-      if (!isDefaultSetup()) {
-        logger.info(
-          `Queries are configured in the repository properties and don't allow combining with other query settings. Any queries configured elsewhere will be ignored.`
-        );
-      }
+      logger.info(
+        `The queries configured in the repository properties don't allow combining with other query settings. Any queries configured elsewhere will be ignored.`
+      );
       return augmentationProperties.repoPropertyQueries.input;
     } else {
       result.push(...augmentationProperties.repoPropertyQueries.input);
diff --git a/src/config/db-config.ts b/src/config/db-config.ts
index 58e8cae45..263949354 100644
--- a/src/config/db-config.ts
+++ b/src/config/db-config.ts
@@ -2,7 +2,6 @@ import * as path from "path";
 
 import * as semver from "semver";
 
-import { isDefaultSetup } from "../actions-util";
 import * as errorMessages from "../error-messages";
 import {
   RepositoryProperties,
@@ -392,12 +391,10 @@ function combineQueries(
     // settings. If they don't allow combining with other query configurations, return just the
     // ones configured in the repository properties.
     if (!augmentationProperties.repoPropertyQueries.combines) {
-      if (!isDefaultSetup()) {
-        logger.info(
-          `Queries are configured in the repository properties and don't allow combining with other query settings. ` +
-            `Any queries configured elsewhere will be ignored.`,
-        );
-      }
+      logger.info(
+        `The queries configured in the repository properties don't allow combining with other query settings. ` +
+          `Any queries configured elsewhere will be ignored.`,
+      );
       return augmentationProperties.repoPropertyQueries.input;
     } else {
       // Otherwise, add them to the query array and continue.