Merge pull request #3026 from github/update-v3.29.9-cc722e476

Merge main into releases/v3

.github/copilot-instructions.md

@@ -0,0 +1,5 @@
+# CodeQL Action - Copilot Instructions
+
+The CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from.
+
+GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that starts with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.

.github/dependabot.yml

@@ -2,8 +2,6 @@ version: 2
 updates:
   - package-ecosystem: npm
     directory: "/"
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     labels:
@@ -26,8 +24,6 @@ updates:
           - "*"
   - package-ecosystem: github-actions
     directory: "/"
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     groups:
@@ -36,8 +32,6 @@ updates:
           - "*"
   - package-ecosystem: github-actions
     directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     groups:

.github/pull_request_template.md

@@ -1,5 +1,14 @@
+
+
+### Risk assessment
+
+For internal use only. Please select the risk level of this change:
+
+- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
+- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
+
 ### Merge / deployment checklist
 
-- [ ] Confirm this change is backwards compatible with existing workflows.
-- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
-- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.
+- Confirm this change is backwards compatible with existing workflows.
+- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
+- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.

.github/workflows/__all-platform-bundle.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - All-platform bundle
@@ -45,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'true'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - id: init
         uses: ./../action/init
         with:

.github/workflows/__analyze-ref-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
@@ -49,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__autobuild-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - autobuild-action

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild direct tracing (custom working directory)

.github/workflows/__autobuild-direct-tracing.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild direct tracing

.github/workflows/__build-mode-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode autobuild

.github/workflows/__build-mode-manual.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode manual
@@ -45,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__build-mode-none.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode none

.github/workflows/__build-mode-rollback.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode rollback

.github/workflows/__bundle-toolcache.yml

@@ -0,0 +1,95 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Caching checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  bundle-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Caching checks'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -0,0 +1,112 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Zstandard checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  bundle-zstd:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Zstandard checks'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Clean up database cluster directory

.github/workflows/__config-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Config export

.github/workflows/__config-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Config input

.github/workflows/__cpp-deptrace-disabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
@@ -27,6 +27,8 @@ jobs:
       fail-fast: false
       matrix:
         include:
+          - os: macos-latest
+            version: linked
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'

.github/workflows/__cpp-deptrace-enabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'

.github/workflows/__diagnostics-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Diagnostic export

.github/workflows/__export-file-baseline-information.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Export file baseline information
@@ -49,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__extract-direct-to-toolcache.yml

@@ -1,96 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Extract directly to toolcache
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  extract-direct-to-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Extract directly to toolcache
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            fs.rmdirSync(codeqlPath, { recursive: true });
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache
-      - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length !== 0) {
-              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
-            }
-            console.log('No versions of CodeQL found in the toolcache');
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-            if (allCodeqlVersions.length > 1) {
-              throw new Error('Multiple CodeQL versions found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_EXTRACT_TOOLCACHE: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test

.github/workflows/__go-custom-queries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
@@ -47,9 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when Go is changed after init step'
@@ -45,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when `file` is not installed'
@@ -45,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - name: Remove `file` program
         run: |
           echo $(which file)

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: workaround for indirect tracing'
@@ -45,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-tracing-autobuilder.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with autobuilder step'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -75,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.24.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with custom build steps'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -75,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.24.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with legacy workflow'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -75,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.24.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__init-with-registries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'

.github/workflows/__javascript-source-root.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Custom source root

.github/workflows/__job-run-uuid-sarif.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Job run UUID added to SARIF

.github/workflows/__language-aliases.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Language aliases

.github/workflows/__multi-language-autodetect.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.17.6
           - os: ubuntu-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: ubuntu-latest
             version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.21.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -75,10 +75,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
           go-version: '>=1.21.0'
-
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__overlay-init-fallback.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Overlay database init fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  overlay-init-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Overlay database init fallback
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: actions # Any language without overlay support will do
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases/actions"
+          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
+            echo "This test needs to be updated to use a non-overlay language."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
@@ -61,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
@@ -61,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
@@ -61,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging.yml

.github/workflows/__packaging-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
@@ -61,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging2.yml

.github/workflows/__quality-queries.yml

@@ -0,0 +1,117 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Quality queries input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  quality-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Quality queries input
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          quality-queries: code-quality
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload security SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Upload quality SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.quality.sarif.json
+          path: ${{ runner.temp }}/results/javascript.quality.sarif
+          retention-days: 7
+      - name: Check quality query does not appear in security SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+          EXPECT_PRESENT: 'false'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+      - name: Check quality query appears in quality SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
+          EXPECT_PRESENT: 'true'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+    env:
+      CHECK_SCRIPT: |
+        const fs = require('fs');
+
+        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
+        const run = sarif.runs[0];
+        const extensions = run.tool.extensions;
+
+        if (extensions === undefined) {
+          core.setFailed('`extensions` property not found in the SARIF run property bag.');
+        }
+
+        // ID of a query we want to check the presence for
+        const targetId = 'js/regex/always-matches';
+        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
+
+        if (found && expectPresent) {
+          console.log(`Found rule with id '${targetId}'.`);
+        } else if (!found && !expectPresent) {
+          console.log(`Rule with id '${targetId}' was not found.`);
+        } else {
+          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
+        }
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Remote config file
@@ -47,6 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__resolve-environment-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Resolve environment

.github/workflows/__rubocop-multi-language.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
@@ -46,7 +46,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@354a1ad156761f5ee2b7b13fa8e09943a5e8d252 # v1.229.0
+        uses: ruby/setup-ruby@2a7b30092b0caf9c046252510f9273b4875f3db9 # v1.254.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration

.github/workflows/__ruby.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Ruby analysis

.github/workflows/__rust.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Rust analysis
@@ -27,6 +27,10 @@ jobs:
       fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: stable-v2.19.3
+          - os: ubuntu-latest
+            version: stable-v2.22.1
           - os: ubuntu-latest
             version: linked
           - os: ubuntu-latest
@@ -53,8 +57,6 @@ jobs:
         with:
           languages: rust
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-        env:
-          CODEQL_ACTION_RUST_ANALYSIS: true
       - uses: ./../action/analyze
         id: analysis
         with:

.github/workflows/__split-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Split workflow
@@ -55,6 +55,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__start-proxy.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Start proxy

.github/workflows/__submit-sarif-failure.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Submit SARIF after failure

.github/workflows/__swift-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Swift analysis using autobuild

.github/workflows/__swift-custom-build.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Swift analysis using a custom build command
@@ -49,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__test-autobuild-working-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild working directory

.github/workflows/__test-local-codeql.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Local CodeQL bundle
@@ -45,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - name: Fetch a CodeQL bundle
         shell: bash
         env:

.github/workflows/__test-proxy.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Proxy test

.github/workflows/__unset-environment.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Test unsetting environment variables
@@ -47,6 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:
@@ -54,9 +59,6 @@ jobs:
       # Swift is not supported on Ubuntu so we manually exclude it from the list here
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: actions/setup-go@v5
-        with:
-          go-version: '>=1.21.0'
       - name: Build code
         shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh

.github/workflows/__upload-quality-sarif.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Upload-sarif: code quality endpoint'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-quality-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+    name: 'Upload-sarif: code quality endpoint'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+          quality-queries: code-quality
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
@@ -49,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__with-checkout-path.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
@@ -49,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - name: Delete original checkout
         shell: bash
         run: |

.github/workflows/__zstd-bundle-streaming.yml

@@ -1,110 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Zstandard bundle (streaming)
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  zstd-bundle-streaming:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-    name: Zstandard bundle (streaming)
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v4
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v7
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            if (!toolsUrl.endsWith('.tar.zst')) {
-              core.setFailed(
-                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_ZSTD_BUNDLE: true
-      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle.yml

@@ -1,113 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Zstandard bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  zstd-bundle:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Zstandard bundle
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v4
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v7
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
-
-            if (!toolsUrl.endsWith(expectedExtension)) {
-              core.setFailed(
-                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_ZSTD_BUNDLE: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/codeql.yml

@@ -75,7 +75,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2019,windows-2022,macos-13,macos-14]
+        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-13,macos-14,macos-15]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 

.github/workflows/codescanning-config-cli.yml

@@ -3,6 +3,9 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  # Diff informed queries add an additional query filter which is not yet
+  # taken into account by these tests.
+  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
 
 on:
   push:

.github/workflows/post-release-mergeback.yml

@@ -168,7 +168,7 @@ jobs:
             --draft
 
       - name: Generate token
-        uses: actions/create-github-app-token@v2.0.2
+        uses: actions/create-github-app-token@v2.0.6
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}

.github/workflows/pr-checks.yml

@@ -67,12 +67,6 @@ jobs:
         with:
           python-version: 3.11
 
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          # When updating this, update the autogenerated code header in `sync.py` too.
-          pip install ruamel.yaml==0.17.31
-
       # Ensure the generated PR check workflows are up to date.
       - name: Verify PR checks up to date
         run: .github/workflows/script/verify-pr-checks.sh

.github/workflows/rebuild.yml

@@ -9,7 +9,7 @@ jobs:
   rebuild:
     name: Rebuild Action
     runs-on: ubuntu-latest
-    if: github.event.label.name == 'Rebuild'
+    if: github.event.label.name == 'Rebuild' || github.event_name == 'workflow_dispatch'
 
     permissions:
       contents: write # needed to push rebuilt commit
@@ -18,9 +18,11 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
         with:
-          ref: ${{ github.event.pull_request.head.ref }}
+          fetch-depth: 0
+          ref: ${{ github.event.pull_request.head.ref || github.event.ref }}
 
       - name: Remove label
+        if: github.event_name == 'pull_request'
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
@@ -28,21 +30,35 @@ jobs:
           gh pr edit --repo github/codeql-action "$PR_NUMBER" \
             --remove-label "Rebuild"
 
+      - name: Configure git
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
       - name: Merge in changes from base branch
+        id: merge
         env:
-          BASE_BRANCH: ${{ github.event.pull_request.base.ref }}
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
         run: |
           git fetch origin "$BASE_BRANCH"
 
           # Allow merge conflicts in `lib`, since rebuilding should resolve them.
-          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected"
+          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected, continuing."
+          MERGE_RESULT=$?
 
-          # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
-          # since `node_modules/@types/semver/README.md` fails it.
-          if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
-            echo "Merge conflicts detected outside of lib/ directory. Please resolve them manually."
-            git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
-            exit 1
+          if [ "$MERGE_RESULT" -ne 0 ]; then
+            echo "merge-in-progress=true" >> $GITHUB_OUTPUT
+
+            # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
+            # since `node_modules/@types/semver/README.md` fails it.
+            if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
+              echo "Merge conflicts were detected outside of the lib directory. Please resolve them manually."
+              git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
+              exit 1
+            fi
+
+            echo "No merge conflicts found outside the lib directory. We should be able to resolve all of" \
+              "these by rebuilding the Action."
           fi
 
       - name: Compile TypeScript
@@ -63,20 +79,49 @@ jobs:
           pip install ruamel.yaml==0.17.31
           python3 sync.py
 
-      - name: Check for changes and push
+      - name: "Merge in progress: Finish merge and push"
+        if: steps.merge.outputs.merge-in-progress == 'true'
+        run: |
+          echo "Finishing merge and pushing changes."
+          git add --all
+          git commit --no-edit
+          git push
+
+      - name: "No merge in progress: Check for changes and push"
+        if: steps.merge.outputs.merge-in-progress != 'true'
+        id: push
+        run: |
+          if [ ! -z "$(git status --porcelain)" ]; then
+            echo "Changes detected, committing and pushing."
+            git add --all
+            # If the merge originally had conflicts, finish the merge.
+            # Otherwise, just commit the changes.
+            if git rev-parse --verify MERGE_HEAD >/dev/null 2>&1; then
+              echo "In progress merge detected, finishing it up."
+              git merge --continue
+            else
+              echo "No in-progress merge detected, committing changes."
+              git commit -m "Rebuild"
+            fi
+            echo "Pushing changes"
+            git push
+            echo "changes=true" >> $GITHUB_OUTPUT
+          else
+            echo "No changes detected, nothing to commit."
+          fi
+
+      - name: Notify about rebuild
+        if: >-
+          github.event_name == 'pull_request' &&
+            (
+              steps.merge.outputs.merge-in-progress == 'true' ||
+              steps.push.outputs.changes == 'true'
+            )
         env:
-          BRANCH: ${{ github.event.pull_request.head.ref }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
         run: |
-          if [ ! -z "$(git status --porcelain)" ]; then
-            git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
-            git config --global user.name "github-actions[bot]"
-            git add --all
-            git commit -m "Rebuild"
-            git push origin "HEAD:$BRANCH"
-            echo "Pushed a commit to rebuild the Action." \
-              "Please mark the PR as ready for review to trigger PR checks." |
-              gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
-            gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"
-          fi
+          echo "Pushed a commit to rebuild the Action." \
+            "Please mark the PR as ready for review to trigger PR checks." |
+            gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
+          gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"

.github/workflows/script/verify-pr-checks.sh

@@ -12,7 +12,7 @@ fi
 rm -rf .github/workflows/__*
 
 # Generate the PR checks
-cd pr-checks && python3 sync.py
+pr-checks/sync.sh
 
 # Check that repo is still clean
 if [ ! -z "$(git status --porcelain)" ]; then

.github/workflows/update-proxy-release.yml

@@ -0,0 +1,101 @@
+name: Update dependency proxy release assets
+on:
+  workflow_dispatch:
+    inputs:
+      tag:
+        description: "The tag of CodeQL Bundle release that contains the proxy binaries as release assets"
+        type: string
+        required: true
+
+jobs:
+  update:
+    name: Update code and create PR
+    timeout-minutes: 15
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write # needed to push the updated files
+      pull-requests: write # needed to create the PR
+    env:
+      RELEASE_TAG: ${{ inputs.tag }}
+    steps:
+      - name: Check release tag format
+        id: checks
+        shell: bash
+        run: |
+          if ! [[ $RELEASE_TAG =~ ^codeql-bundle-v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
+            echo "Invalid release tag: expected a CodeQL bundle tag in the 'codeql-bundle-vM.N.P' format."
+            exit 1
+          fi
+
+          echo "target_branch=dependency-proxy/$RELEASE_TAG" >> $GITHUB_OUTPUT
+
+      - name: Check that the release exists
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+        run: |
+          (gh release view --repo "$GITHUB_REPOSITORY" --json "assets" "$RELEASE_TAG" && echo "Release found.") || exit 1
+
+      - name: Install Node
+        uses: actions/setup-node@v4
+
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0  # ensure we have all tags and can push commits
+          ref: main
+
+      - name: Update git config
+        shell: bash
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Update release tag and version
+        shell: bash
+        run: |
+          NOW=$(date +"%Y%m%d%H%M%S") # only used to make sure we don't fetch stale binaries from the toolcache
+          sed -i "s|https://github.com/github/codeql-action/releases/download/codeql-bundle-v[0-9.]\+/|https://github.com/github/codeql-action/releases/download/$RELEASE_TAG/|g" ./src/start-proxy-action.ts
+          sed -i "s/\"v2.0.[0-9]\+\"/\"v2.0.$NOW\"/g" ./src/start-proxy-action.ts
+
+      - name: Compile TypeScript and commit changes
+        shell: bash
+        env:
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+        run: |
+          set -exu
+          git checkout -b "$TARGET_BRANCH"
+
+          npm run build
+          git add ./src/start-proxy-action.ts
+          git add ./lib
+          git commit -m "Update release used by \`start-proxy\` action"
+
+      - name: Push changes and open PR
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+          PR_FLAG: ${{ (github.event_name == 'workflow_dispatch' && '--draft') || '--dry-run' }}
+        run: |
+          set -exu
+          pr_title="Update release used by \`start-proxy\` to \`$RELEASE_TAG\`"
+          pr_body=$(cat << EOF
+            This PR updates the \`start-proxy\` action to use the private registry proxy binaries that
+            are attached as release assets to the \`$RELEASE_TAG\` release.
+
+
+            Please do the following before merging:
+
+            - [ ] Verify that the changes to the code are correct.
+            - [ ] Mark the PR as ready for review to trigger the CI.
+          EOF
+          )
+
+          git push origin "$TARGET_BRANCH"
+          gh pr create \
+            --head "$TARGET_BRANCH" \
+            --base "main" \
+            --title "${pr_title}" \
+            --body "${pr_body}" \
+            $PR_FLAG

.github/workflows/update-release-branch.yml

@@ -124,7 +124,7 @@ jobs:
       pull-requests: write # needed to create pull request
     steps:
     - name: Generate token
-      uses: actions/create-github-app-token@v2.0.2
+      uses: actions/create-github-app-token@v2.0.6
       id: app-token
       with:
         app-id: ${{ vars.AUTOMATION_APP_ID }}

CHANGELOG.md

@@ -2,10 +2,75 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
-## [UNRELEASED]
+## 3.29.9 - 12 Aug 2025
 
 No user facing changes.
 
+## 3.29.8 - 08 Aug 2025
+
+- Fix an issue where the Action would autodetect unsupported languages such as HTML. [#3015](https://github.com/github/codeql-action/pull/3015)
+
+## 3.29.7 - 07 Aug 2025
+
+This release rolls back 3.29.6 to address issues with language autodetection. It is identical to 3.29.5.
+
+## 3.29.6 - 07 Aug 2025
+
+- The `cleanup-level` input to the `analyze` Action is now deprecated. The CodeQL Action has written a limited amount of intermediate results to the database since version 2.2.5, and now automatically manages cleanup. [#2999](https://github.com/github/codeql-action/pull/2999)
+- Update default CodeQL bundle version to 2.22.3. [#3000](https://github.com/github/codeql-action/pull/3000)
+
+## 3.29.5 - 29 Jul 2025
+
+- Update default CodeQL bundle version to 2.22.2. [#2986](https://github.com/github/codeql-action/pull/2986)
+
+## 3.29.4 - 23 Jul 2025
+
+No user facing changes.
+
+## 3.29.3 - 21 Jul 2025
+
+No user facing changes.
+
+## 3.29.2 - 30 Jun 2025
+
+- Experimental: When the `quality-queries` input for the `init` action is provided with an argument, separate `.quality.sarif` files are produced and uploaded for each language with the results of the specified queries. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#2935](https://github.com/github/codeql-action/pull/2935)
+
+## 3.29.1 - 27 Jun 2025
+
+- Fix bug in PR analysis where user-provided `include` query filter fails to exclude non-included queries. [#2938](https://github.com/github/codeql-action/pull/2938)
+- Update default CodeQL bundle version to 2.22.1. [#2950](https://github.com/github/codeql-action/pull/2950)
+
+## 3.29.0 - 11 Jun 2025
+
+- Update default CodeQL bundle version to 2.22.0. [#2925](https://github.com/github/codeql-action/pull/2925)
+- Bump minimum CodeQL bundle version to 2.16.6. [#2912](https://github.com/github/codeql-action/pull/2912)
+
+## 3.28.21 - 28 July 2025
+
+No user facing changes.
+
+## 3.28.20 - 21 July 2025
+
+- Remove support for combining SARIF files from a single upload for GHES 3.18, see [the changelog post](https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload/). [#2959](https://github.com/github/codeql-action/pull/2959)
+
+## 3.28.19 - 03 Jun 2025
+
+- The CodeQL Action no longer includes its own copy of the extractor for the `actions` language, which is currently in public preview.
+  The `actions` extractor has been included in the CodeQL CLI since v2.20.6. If your workflow has enabled the `actions` language _and_ you have pinned
+  your `tools:` property to a specific version of the CodeQL CLI earlier than v2.20.6, you will need to update to at least CodeQL v2.20.6 or disable
+  `actions` analysis.
+- Update default CodeQL bundle version to 2.21.4. [#2910](https://github.com/github/codeql-action/pull/2910)
+
+## 3.28.18 - 16 May 2025
+
+- Update default CodeQL bundle version to 2.21.3. [#2893](https://github.com/github/codeql-action/pull/2893)
+- Skip validating SARIF produced by CodeQL for improved performance. [#2894](https://github.com/github/codeql-action/pull/2894)
+- The number of threads and amount of RAM used by CodeQL can now be set via the `CODEQL_THREADS` and `CODEQL_RAM` runner environment variables. If set, these environment variables override the `threads` and `ram` inputs respectively. [#2891](https://github.com/github/codeql-action/pull/2891)
+
+## 3.28.17 - 02 May 2025
+
+- Update default CodeQL bundle version to 2.21.2. [#2872](https://github.com/github/codeql-action/pull/2872)
+
 ## 3.28.16 - 23 Apr 2025
 
 - Update default CodeQL bundle version to 2.21.1. [#2863](https://github.com/github/codeql-action/pull/2863)

README.md

@@ -55,7 +55,7 @@ For compiled languages:
 
 - `manual` build mode will typically produce the most precise results, but it is more difficult to set up and will cause the analysis to take slightly more time to run.
 - `autobuild` build mode is simpler to set up, but will only work for projects with generic build steps that can be guessed by the heuristics of the autobuild scripts. If `autobuild` fails, then you must switch to `manual` or `none`. If `autobuild` succeeds, then the results and run time will be the same as `manual` mode.
-- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by C/C++, Swift, Go, or Kotlin.
+- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by Swift, Go, or Kotlin. It is in public preview for C/C++.
 
 
 ## Supported versions of the CodeQL Action
@@ -70,10 +70,11 @@ We typically release new minor versions of the CodeQL Action and Bundle when a n
 
 | Minimum CodeQL Action | Minimum CodeQL Bundle Version | GitHub Environment | Notes |
 |-----------------------|-------------------------------|--------------------|-------|
-| `v3.26.6`  | `2.18.4` | Enterprise Server 3.15 | |
-| `v3.25.11` | `2.17.6` | Enterprise Server 3.14 | |
-| `v3.24.11` | `2.16.6` | Enterprise Server 3.13 | |
-| `v3.22.12` | `2.15.5` | Enterprise Server 3.12 | |
+| `v3.28.21`  | `2.21.3` | Enterprise Server 3.18 | |
+| `v3.28.12`  | `2.20.7` | Enterprise Server 3.17 | |
+| `v3.28.6`  | `2.20.3` | Enterprise Server 3.16 | |
+| `v3.28.6`  | `2.20.3` | Enterprise Server 3.15 | |
+| `v3.28.6` | `2.20.3` | Enterprise Server 3.14 | |
 
 See the full list of GHES release and deprecation dates at [GitHub Enterprise Server releases](https://docs.github.com/en/enterprise-server/admin/all-releases#releases-of-github-enterprise-server).
 

actions-extractor/codeql-extractor.yml

@@ -1,44 +0,0 @@
-name: "actions"
-aliases: []
-display_name: "GitHub Actions"
-version: 0.0.1
-column_kind: "utf16"
-unicode_newlines: true
-build_modes:
-  - none
-file_coverage_languages: []
-github_api_languages: []
-scc_languages: []
-file_types:
-  - name: workflow
-    display_name: GitHub Actions workflow files
-    extensions:
-      - .yml
-      - .yaml
-forwarded_extractor_name: javascript
-options:
-  trap:
-    title: TRAP options
-    description: Options about how the extractor handles TRAP files
-    type: object
-    visibility: 3
-    properties:
-      cache:
-        title: TRAP cache options
-        description: Options about how the extractor handles its TRAP cache
-        type: object
-        properties:
-          dir:
-            title: TRAP cache directory
-            description: The directory of the TRAP cache to use
-            type: string
-          bound:
-            title: TRAP cache bound
-            description: A soft limit (in MB) on the size of the TRAP cache
-            type: string
-            pattern: "[0-9]+"
-          write:
-            title: TRAP cache writeable
-            description: Whether to write to the TRAP cache as well as reading it
-            type: string
-            pattern: "(true|TRUE|false|FALSE)"

actions-extractor/tools/autobuild-impl.ps1

@@ -1,40 +0,0 @@
-if (($null -ne $env:LGTM_INDEX_INCLUDE) -or ($null -ne $env:LGTM_INDEX_EXCLUDE) -or ($null -ne $env:LGTM_INDEX_FILTERS)) {
-    Write-Output 'Path filters set. Passing them through to the JavaScript extractor.' 
-} else {
-    Write-Output 'No path filters set. Using the default filters.'
-    $DefaultPathFilters = @(
-        'exclude:**/*',
-        'include:.github/workflows/**/*.yml',
-        'include:.github/workflows/**/*.yaml',
-        'include:**/action.yml',
-        'include:**/action.yaml'
-    )
-
-    $env:LGTM_INDEX_FILTERS = $DefaultPathFilters -join "`n"
-}
-
-# Find the JavaScript extractor directory via `codeql resolve extractor`.
-$CodeQL = Join-Path $env:CODEQL_DIST 'codeql.exe'
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT = &$CodeQL resolve extractor --language javascript
-if ($LASTEXITCODE -ne 0) {
-    throw 'Failed to resolve JavaScript extractor.'
-}
-
-Write-Output "Found JavaScript extractor at '${env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}'."
-
-# Run the JavaScript autobuilder.
-$JavaScriptAutoBuild = Join-Path $env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT 'tools\autobuild.cmd'
-Write-Output "Running JavaScript autobuilder at '${JavaScriptAutoBuild}'."
-
-# Copy the values of the Actions extractor environment variables to the JavaScript extractor environment variables.
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_DIAGNOSTIC_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_DIAGNOSTIC_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_LOG_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_LOG_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_SCRATCH_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SCRATCH_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_SOURCE_ARCHIVE_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SOURCE_ARCHIVE_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_TRAP_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_TRAP_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_WIP_DATABASE = $env:CODEQL_EXTRACTOR_ACTIONS_WIP_DATABASE
-
-&$JavaScriptAutoBuild
-if ($LASTEXITCODE -ne 0) {
-    throw "JavaScript autobuilder failed."
-}

actions-extractor/tools/autobuild.cmd

@@ -1,3 +0,0 @@
-@echo off
-rem All of the work is done in the PowerShell script
-powershell.exe %~dp0autobuild-impl.ps1

actions-extractor/tools/autobuild.sh

@@ -1,39 +0,0 @@
-#!/bin/sh
-
-set -eu
-
-DEFAULT_PATH_FILTERS=$(cat << END
-exclude:**/*
-include:.github/workflows/**/*.yml
-include:.github/workflows/**/*.yaml
-include:**/action.yml
-include:**/action.yaml
-END
-)
-
-if [ -n "${LGTM_INDEX_INCLUDE:-}" ] || [ -n "${LGTM_INDEX_EXCLUDE:-}" ] || [ -n "${LGTM_INDEX_FILTERS:-}" ] ; then
-    echo "Path filters set. Passing them through to the JavaScript extractor."
-else
-    echo "No path filters set. Using the default filters."
-    LGTM_INDEX_FILTERS="${DEFAULT_PATH_FILTERS}"
-    export LGTM_INDEX_FILTERS
-fi
-
-# Find the JavaScript extractor directory via `codeql resolve extractor`.
-CODEQL_EXTRACTOR_JAVASCRIPT_ROOT="$($CODEQL_DIST/codeql resolve extractor --language javascript)"
-export CODEQL_EXTRACTOR_JAVASCRIPT_ROOT
-
-echo "Found JavaScript extractor at '${CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}'."
-
-# Run the JavaScript autobuilder
-JAVASCRIPT_AUTO_BUILD="${CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}/tools/autobuild.sh"
-echo "Running JavaScript autobuilder at '${JAVASCRIPT_AUTO_BUILD}'."
-
-# Copy the values of the Actions extractor environment variables to the JavaScript extractor environment variables.
-env CODEQL_EXTRACTOR_JAVASCRIPT_DIAGNOSTIC_DIR="${CODEQL_EXTRACTOR_ACTIONS_DIAGNOSTIC_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_LOG_DIR="${CODEQL_EXTRACTOR_ACTIONS_LOG_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_SCRATCH_DIR="${CODEQL_EXTRACTOR_ACTIONS_SCRATCH_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_SOURCE_ARCHIVE_DIR="${CODEQL_EXTRACTOR_ACTIONS_SOURCE_ARCHIVE_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_TRAP_DIR="${CODEQL_EXTRACTOR_ACTIONS_TRAP_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_WIP_DATABASE="${CODEQL_EXTRACTOR_ACTIONS_WIP_DATABASE}" \
-    ${JAVASCRIPT_AUTO_BUILD}

analyze/action.yml

@@ -19,9 +19,10 @@ inputs:
     # If changing this, make sure to update workflow.ts accordingly.
     default: "always"
   cleanup-level:
-    description: "Level of cleanup to perform on CodeQL databases at the end of the analyze step. This should either be 'none' to skip cleanup, or be a valid argument for the --cache-cleanup flag of the CodeQL CLI command 'codeql database cleanup' as documented at https://codeql.github.com/docs/codeql-cli/manual/database-cleanup"
+    description: >-
+      DEPRECATED. This option is ignored since, for performance reasons, the CodeQL Action automatically
+      manages cleanup of intermediate results.
     required: false
-    default: "brutal"
   ram:
     description: >-
       The amount of memory in MB that can be used by CodeQL for database finalization and query execution.

eslint.config.mjs

@@ -138,6 +138,7 @@ export default [
     rules: {
       "@typescript-eslint/no-explicit-any": "off",
       "@typescript-eslint/no-unsafe-assignment": "off",
+      "@typescript-eslint/no-unsafe-enum-comparison": "off",
       "@typescript-eslint/no-unsafe-member-access": "off",
       "@typescript-eslint/no-var-requires": "off",
       "@typescript-eslint/prefer-regexp-exec": "off",

init/action.yml

@@ -83,6 +83,9 @@ inputs:
   queries:
     description: Comma-separated list of additional queries to run. By default, this overrides the same setting in a configuration file; prefix with "+" to use both sets of queries.
     required: false
+  quality-queries:
+    description: '[Internal] Comma-separated list of code quality queries to run.'
+    required: false
   packs:
     description: >-
       Comma-separated list of packs to run. Reference a pack in the format `scope/name[@version]`. If `version` is not

lib/actions-util.js

@@ -49,10 +49,14 @@ exports.isDefaultSetup = isDefaultSetup;
 exports.prettyPrintInvocation = prettyPrintInvocation;
 exports.ensureEndsInPeriod = ensureEndsInPeriod;
 exports.runTool = runTool;
+exports.getPullRequestBranches = getPullRequestBranches;
+exports.isAnalyzingPullRequest = isAnalyzingPullRequest;
+exports.fixCodeQualityCategory = fixCodeQualityCategory;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const core = __importStar(require("@actions/core"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const github = __importStar(require("@actions/github"));
 const io = __importStar(require("@actions/io"));
 const util_1 = require("./util");
 // eslint-disable-next-line import/no-commonjs, @typescript-eslint/no-require-imports
@@ -261,7 +265,7 @@ function prettyPrintInvocation(cmd, args) {
  * An error from a tool invocation, with associated exit code, stderr, etc.
  */
 class CommandInvocationError extends Error {
-    constructor(cmd, args, exitCode, stderr, stdout) {
+    constructor(cmd, args, exitCode, stderr, stdout = "") {
         const prettyCommand = prettyPrintInvocation(cmd, args);
         const lastLine = ensureEndsInPeriod(stderr.trim().split("\n").pop()?.trim() || "n/a");
         super(`Failed to run "${prettyCommand}". ` +
@@ -352,4 +356,75 @@ const restoreInputs = function () {
     }
 };
 exports.restoreInputs = restoreInputs;
+/**
+ * Returns the base and head branches of the pull request being analyzed.
+ *
+ * @returns the base and head branches of the pull request, or undefined if
+ * we are not analyzing a pull request.
+ */
+function getPullRequestBranches() {
+    const pullRequest = github.context.payload.pull_request;
+    if (pullRequest) {
+        return {
+            base: pullRequest.base.ref,
+            // We use the head label instead of the head ref here, because the head
+            // ref lacks owner information and by itself does not uniquely identify
+            // the head branch (which may be in a forked repository).
+            head: pullRequest.head.label,
+        };
+    }
+    // PR analysis under Default Setup does not have the pull_request context,
+    // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
+    const codeScanningRef = process.env.CODE_SCANNING_REF;
+    const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
+    if (codeScanningRef && codeScanningBaseBranch) {
+        return {
+            base: codeScanningBaseBranch,
+            // PR analysis under Default Setup analyzes the PR head commit instead of
+            // the merge commit, so we can use the provided ref directly.
+            head: codeScanningRef,
+        };
+    }
+    return undefined;
+}
+/**
+ * Returns whether we are analyzing a pull request.
+ */
+function isAnalyzingPullRequest() {
+    return getPullRequestBranches() !== undefined;
+}
+/**
+ * A workaround for code quality to map category names from old default setup workflows
+ * to ones that the code quality service expects.
+ */
+const qualityCategoryMapping = {
+    "c#": "csharp",
+    cpp: "c-cpp",
+    c: "c-cpp",
+    "c++": "c-cpp",
+    java: "java-kotlin",
+    javascript: "javascript-typescript",
+    typescript: "javascript-typescript",
+    kotlin: "java-kotlin",
+};
+/** Adjusts the category string for a Code Quality SARIF file if an "old"
+ * category identifier is used by Default Setup.
+ */
+function fixCodeQualityCategory(logger, category) {
+    // The `category` should always be set by Default Setup. We perform this check
+    // to avoid potential issues if Code Quality supports Advanced Setup in the future
+    // and before this workaround is removed.
+    if (category !== undefined &&
+        isDefaultSetup() &&
+        category.startsWith("/language:")) {
+        const language = category.substring("/language:".length);
+        const mappedLanguage = qualityCategoryMapping[language];
+        if (mappedLanguage) {
+            const newCategory = `/language:${mappedLanguage}`;
+            logger.info(`Adjusted category for Code Quality from '${category}' to '${newCategory}'.`);
+            return newCategory;
+        }
+    }
+    return category;
+}
 //# sourceMappingURL=actions-util.js.map

lib/actions-util.test.js

@@ -1,14 +1,79 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const github = __importStar(require("@actions/github"));
 const ava_1 = __importDefault(require("ava"));
+const actions_util_1 = require("./actions-util");
 const api_client_1 = require("./api-client");
 const environment_1 = require("./environment");
+const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const util_1 = require("./util");
 (0, testing_utils_1.setupTests)(ava_1.default);
+function withMockedContext(mockPayload, testFn) {
+    const originalPayload = github.context.payload;
+    github.context.payload = mockPayload;
+    try {
+        return testFn();
+    }
+    finally {
+        github.context.payload = originalPayload;
+    }
+}
+function withMockedEnv(envVars, testFn) {
+    const originalEnv = { ...process.env };
+    // Apply environment changes
+    for (const [key, value] of Object.entries(envVars)) {
+        if (value === undefined) {
+            delete process.env[key];
+        }
+        else {
+            process.env[key] = value;
+        }
+    }
+    try {
+        return testFn();
+    }
+    finally {
+        // Restore original environment
+        process.env = originalEnv;
+    }
+}
 (0, ava_1.default)("computeAutomationID()", async (t) => {
     let actualAutomationID = (0, api_client_1.computeAutomationID)(".github/workflows/codeql-analysis.yml:analyze", '{"language": "javascript", "os": "linux"}');
     t.deepEqual(actualAutomationID, ".github/workflows/codeql-analysis.yml:analyze/language:javascript/os:linux/");
@@ -25,8 +90,103 @@ const util_1 = require("./util");
     actualAutomationID = (0, api_client_1.computeAutomationID)(".github/workflows/codeql-analysis.yml:analyze", undefined);
     t.deepEqual(actualAutomationID, ".github/workflows/codeql-analysis.yml:analyze/");
 });
+(0, ava_1.default)("getPullRequestBranches() with pull request context", (t) => {
+    withMockedContext({
+        pull_request: {
+            number: 123,
+            base: { ref: "main" },
+            head: { label: "user:feature-branch" },
+        },
+    }, () => {
+        t.deepEqual((0, actions_util_1.getPullRequestBranches)(), {
+            base: "main",
+            head: "user:feature-branch",
+        });
+        t.is((0, actions_util_1.isAnalyzingPullRequest)(), true);
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined with push context", (t) => {
+    withMockedContext({
+        push: {
+            ref: "refs/heads/main",
+        },
+    }, () => {
+        t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+        t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() with Default Setup environment variables", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: "refs/heads/feature-branch",
+            CODE_SCANNING_BASE_BRANCH: "main",
+        }, () => {
+            t.deepEqual((0, actions_util_1.getPullRequestBranches)(), {
+                base: "main",
+                head: "refs/heads/feature-branch",
+            });
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), true);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when only CODE_SCANNING_REF is set", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: "refs/heads/feature-branch",
+            CODE_SCANNING_BASE_BRANCH: undefined,
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when only CODE_SCANNING_BASE_BRANCH is set", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: undefined,
+            CODE_SCANNING_BASE_BRANCH: "main",
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
+(0, ava_1.default)("getPullRequestBranches() returns undefined when no PR context", (t) => {
+    withMockedContext({}, () => {
+        withMockedEnv({
+            CODE_SCANNING_REF: undefined,
+            CODE_SCANNING_BASE_BRANCH: undefined,
+        }, () => {
+            t.is((0, actions_util_1.getPullRequestBranches)(), undefined);
+            t.is((0, actions_util_1.isAnalyzingPullRequest)(), false);
+        });
+    });
+});
 (0, ava_1.default)("initializeEnvironment", (t) => {
     (0, util_1.initializeEnvironment)("1.2.3");
     t.deepEqual(process.env[environment_1.EnvVar.VERSION], "1.2.3");
 });
+(0, ava_1.default)("fixCodeQualityCategory", (t) => {
+    withMockedEnv({
+        GITHUB_EVENT_NAME: "dynamic",
+    }, () => {
+        const logger = (0, logging_1.getRunnerLogger)(true);
+        // Categories that should get adjusted.
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:c#"), "/language:csharp");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:cpp"), "/language:c-cpp");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:c"), "/language:c-cpp");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:java"), "/language:java-kotlin");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:javascript"), "/language:javascript-typescript");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:typescript"), "/language:javascript-typescript");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:kotlin"), "/language:java-kotlin");
+        // Categories that should not get adjusted.
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:csharp"), "/language:csharp");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:go"), "/language:go");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "/language:actions"), "/language:actions");
+        // Other cases.
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, undefined), undefined);
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "random string"), "random string");
+        t.is((0, actions_util_1.fixCodeQualityCategory)(logger, "kotlin"), "kotlin");
+    });
+});
 //# sourceMappingURL=actions-util.test.js.map

lib/analyze-action-env.test.js

@@ -68,6 +68,7 @@ const util = __importStar(require("./util"));
         };
         sinon.stub(configUtils, "getConfig").resolves({
             gitHubVersion,
+            augmentationProperties: {},
             languages: [],
             packs: [],
             trapCaches: {},
@@ -75,8 +76,8 @@ const util = __importStar(require("./util"));
         const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
         requiredInputStub.withArgs("token").returns("fake-token");
         requiredInputStub.withArgs("upload-database").returns("false");
+        requiredInputStub.withArgs("output").returns("out");
         const optionalInputStub = sinon.stub(actionsUtil, "getOptionalInput");
-        optionalInputStub.withArgs("cleanup-level").returns("none");
         optionalInputStub.withArgs("expect-error").returns("false");
         sinon.stub(api, "getGitHubVersion").resolves(gitHubVersion);
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
@@ -95,8 +96,10 @@ const util = __importStar(require("./util"));
         // runFinalize and runQueries are correctly captured by spies, we explicitly
         // wait for the action promise to complete before starting verification.
         await analyzeAction.runPromise;
+        t.assert(runFinalizeStub.calledOnce);
         t.deepEqual(runFinalizeStub.firstCall.args[1], "--threads=-1");
         t.deepEqual(runFinalizeStub.firstCall.args[2], "--ram=4992");
+        t.assert(runQueriesStub.calledOnce);
         t.deepEqual(runQueriesStub.firstCall.args[3], "--threads=-1");
         t.deepEqual(runQueriesStub.firstCall.args[1], "--ram=4992");
     });

lib/analyze-action-env.test.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyze-action-env.test.js","sourceRoot":"","sources":["../src/analyze-action-env.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,kDAAoC;AACpC,4DAA8C;AAC9C,sDAAwC;AACxC,8DAAgD;AAChD,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,8DAA8D,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC/E,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,YAAY,EAAE,wBAAwB,CAAC;aAC5C,QAAQ,CAAC,EAAmC,CAAC,CAAC;QACjD,KAAK,CAAC,IAAI,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC,QAAQ,EAAE,CAAC;QACxD,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,0BAA0B,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAEhE,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,sBAAsB,EAAE,EAAE;YAC1B,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,iBAAiB,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;QACpD,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC5D,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,uEAAuE;QACvE,0EAA0E;QAC1E,iBAAiB;QACjB,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,IAAI,CAAC;QACrC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,iEAAiE;QACjE,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,MAAM,CAAC,eAAe,CAAC,UAAU,CAAC,CAAC;QACrC,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,UAAU,CAAC,CAAC;QACpC,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/analyze-action-input.test.js

@@ -67,6 +67,7 @@ const util = __importStar(require("./util"));
         };
         sinon.stub(configUtils, "getConfig").resolves({
             gitHubVersion,
+            augmentationProperties: {},
             languages: [],
             packs: [],
             trapCaches: {},
@@ -74,8 +75,8 @@ const util = __importStar(require("./util"));
         const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
         requiredInputStub.withArgs("token").returns("fake-token");
         requiredInputStub.withArgs("upload-database").returns("false");
+        requiredInputStub.withArgs("output").returns("out");
         const optionalInputStub = sinon.stub(actionsUtil, "getOptionalInput");
-        optionalInputStub.withArgs("cleanup-level").returns("none");
         optionalInputStub.withArgs("expect-error").returns("false");
         sinon.stub(api, "getGitHubVersion").resolves(gitHubVersion);
         sinon.stub(gitUtils, "isAnalyzingDefaultBranch").resolves(true);
@@ -95,8 +96,10 @@ const util = __importStar(require("./util"));
         // runFinalize and runQueries are correctly captured by spies, we explicitly
         // wait for the action promise to complete before starting verification.
         await analyzeAction.runPromise;
+        t.assert(runFinalizeStub.calledOnce);
         t.deepEqual(runFinalizeStub.firstCall.args[1], "--threads=-1");
         t.deepEqual(runFinalizeStub.firstCall.args[2], "--ram=3012");
+        t.assert(runQueriesStub.calledOnce);
         t.deepEqual(runQueriesStub.firstCall.args[3], "--threads=-1");
         t.deepEqual(runQueriesStub.firstCall.args[1], "--ram=3012");
     });

lib/analyze-action-input.test.js.map

@@ -1 +1 @@
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lib/analyze-action.js

@@ -55,6 +55,7 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
 const statusReport = __importStar(require("./status-report"));
 const status_report_1 = require("./status-report");
@@ -94,8 +95,8 @@ function hasBadExpectErrorInput() {
  * indicating whether Go extraction has extracted at least one file.
  */
 function doesGoExtractionOutputExist(config) {
-    const golangDbDirectory = util.getCodeQLDatabasePath(config, languages_1.Language.go);
-    const trapDirectory = path_1.default.join(golangDbDirectory, "trap", languages_1.Language.go);
+    const golangDbDirectory = util.getCodeQLDatabasePath(config, languages_1.KnownLanguage.go);
+    const trapDirectory = path_1.default.join(golangDbDirectory, "trap", languages_1.KnownLanguage.go);
     return (fs.existsSync(trapDirectory) &&
         fs
             .readdirSync(trapDirectory)
@@ -122,7 +123,7 @@ function doesGoExtractionOutputExist(config) {
  * whether any extraction output already exists for Go.
  */
 async function runAutobuildIfLegacyGoWorkflow(config, logger) {
-    if (!config.languages.includes(languages_1.Language.go)) {
+    if (!config.languages.includes(languages_1.KnownLanguage.go)) {
         return;
     }
     if (config.buildMode) {
@@ -133,7 +134,7 @@ async function runAutobuildIfLegacyGoWorkflow(config, logger) {
         logger.debug("Won't run Go autobuild since it has already been run.");
         return;
     }
-    if ((0, analyze_1.dbIsFinalized)(config, languages_1.Language.go, logger)) {
+    if ((0, analyze_1.dbIsFinalized)(config, languages_1.KnownLanguage.go, logger)) {
         logger.debug("Won't run Go autobuild since there is already a finalized database for Go.");
         return;
     }
@@ -148,7 +149,7 @@ async function runAutobuildIfLegacyGoWorkflow(config, logger) {
         return;
     }
     logger.debug("Running Go autobuild because extraction output (TRAP files) for Go code has not been found.");
-    await (0, autobuild_1.runAutobuild)(config, languages_1.Language.go, logger);
+    await (0, autobuild_1.runAutobuild)(config, languages_1.KnownLanguage.go, logger);
 }
 async function run() {
     const startedAt = new Date();
@@ -160,14 +161,6 @@ async function run() {
     let dbCreationTimings = undefined;
     let didUploadTrapCaches = false;
     util.initializeEnvironment(actionsUtil.getActionVersion());
-    // Unset the CODEQL_PROXY_* environment variables, as they are not needed
-    // and can cause issues with the CodeQL CLI
-    // Check for CODEQL_PROXY_HOST: and if it is empty but set, unset it
-    if (process.env.CODEQL_PROXY_HOST === "") {
-        delete process.env.CODEQL_PROXY_HOST;
-        delete process.env.CODEQL_PROXY_PORT;
-        delete process.env.CODEQL_PROXY_CA_CERTIFICATE;
-    }
     // Make inputs accessible in the `post` step, details at
     // https://github.com/github/codeql-action/issues/2553
     actionsUtil.persistInputs();
@@ -185,6 +178,18 @@ async function run() {
         if (hasBadExpectErrorInput()) {
             throw new util.ConfigurationError("`expect-error` input parameter is for internal use only. It should only be set by codeql-action or a fork.");
         }
+        // Unset the CODEQL_PROXY_* environment variables when using older CodeQL
+        // CLIs, as they are not needed and can cause issues.
+        if (process.env.CODEQL_PROXY_HOST === "" &&
+            !(await util.codeQlVersionAtLeast(codeql, "2.20.7"))) {
+            delete process.env.CODEQL_PROXY_HOST;
+            delete process.env.CODEQL_PROXY_PORT;
+            delete process.env.CODEQL_PROXY_CA_CERTIFICATE;
+        }
+        if (actionsUtil.getOptionalInput("cleanup-level") !== "") {
+            logger.info("The 'cleanup-level' input is ignored since the CodeQL Action now automatically " +
+                "manages database cleanup. This input can safely be removed from your workflow.");
+        }
         const apiDetails = (0, api_client_1.getApiDetails)();
         const outputDir = actionsUtil.getRequiredInput("output");
         core.exportVariable(environment_1.EnvVar.SARIF_RESULTS_OUTPUT_DIR, outputDir);
@@ -201,12 +206,8 @@ async function run() {
         await (0, analyze_1.warnIfGoInstalledAfterInit)(config, logger);
         await runAutobuildIfLegacyGoWorkflow(config, logger);
         dbCreationTimings = await (0, analyze_1.runFinalize)(outputDir, threads, memory, codeql, config, logger);
-        const cleanupLevel = actionsUtil.getOptionalInput("cleanup-level") || "brutal";
         if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
-            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, cleanupLevel, diffRangePackDir, actionsUtil.getOptionalInput("category"), config, logger, features);
-        }
-        if (cleanupLevel !== "none") {
-            await (0, analyze_1.runCleanup)(config, cleanupLevel, logger);
+            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, diffRangePackDir, actionsUtil.getOptionalInput("category"), codeql, config, logger, features);
         }
         const dbLocations = {};
         for (const language of config.languages) {
@@ -216,14 +217,22 @@ async function run() {
         core.setOutput("sarif-output", path_1.default.resolve(outputDir));
         const uploadInput = actionsUtil.getOptionalInput("upload");
         if (runStats && actionsUtil.getUploadValue(uploadInput) === "always") {
-            uploadResult = await uploadLib.uploadFiles(outputDir, actionsUtil.getRequiredInput("checkout_path"), actionsUtil.getOptionalInput("category"), features, logger);
+            uploadResult = await uploadLib.uploadFiles(outputDir, actionsUtil.getRequiredInput("checkout_path"), actionsUtil.getOptionalInput("category"), features, logger, uploadLib.CodeScanningTarget);
             core.setOutput("sarif-id", uploadResult.sarifID);
+            if (config.augmentationProperties.qualityQueriesInput !== undefined) {
+                const qualityUploadResult = await uploadLib.uploadFiles(outputDir, actionsUtil.getRequiredInput("checkout_path"), actionsUtil.fixCodeQualityCategory(logger, actionsUtil.getOptionalInput("category")), features, logger, uploadLib.CodeQualityTarget);
+                core.setOutput("quality-sarif-id", qualityUploadResult.sarifID);
+            }
         }
         else {
             logger.info("Not uploading results");
         }
-        // Possibly upload the database bundles for remote queries
-        await (0, database_upload_1.uploadDatabases)(repositoryNwo, config, apiDetails, logger);
+        // Possibly upload the overlay-base database to actions cache.
+        // If databases are to be uploaded, they will first be cleaned up at the overlay level.
+        await (0, overlay_database_utils_1.uploadOverlayBaseDatabaseToCache)(codeql, config, logger);
+        // Possibly upload the database bundles for remote queries.
+        // If databases are to be uploaded, they will first be cleaned up at the clear level.
+        await (0, database_upload_1.uploadDatabases)(repositoryNwo, codeql, config, apiDetails, logger);
         // Possibly upload the TRAP caches for later re-use
         const trapCacheUploadStartTime = perf_hooks_1.performance.now();
         didUploadTrapCaches = await (0, trap_caching_1.uploadTrapCaches)(codeql, config, logger);

lib/analyze.js

@@ -36,24 +36,23 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.exportedForTesting = exports.CodeQLAnalysisError = void 0;
+exports.exportedForTesting = exports.defaultSuites = exports.CodeQLAnalysisError = void 0;
 exports.runExtraction = runExtraction;
 exports.dbIsFinalized = dbIsFinalized;
 exports.setupDiffInformedQueryRun = setupDiffInformedQueryRun;
+exports.resolveQuerySuiteAlias = resolveQuerySuiteAlias;
 exports.runQueries = runQueries;
 exports.runFinalize = runFinalize;
 exports.warnIfGoInstalledAfterInit = warnIfGoInstalledAfterInit;
-exports.runCleanup = runCleanup;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const perf_hooks_1 = require("perf_hooks");
 const io = __importStar(require("@actions/io"));
 const del_1 = __importDefault(require("del"));
 const yaml = __importStar(require("js-yaml"));
-const actionsUtil = __importStar(require("./actions-util"));
+const actions_util_1 = require("./actions-util");
 const api_client_1 = require("./api-client");
 const autobuild_1 = require("./autobuild");
-const codeql_1 = require("./codeql");
 const dependency_caching_1 = require("./dependency-caching");
 const diagnostics_1 = require("./diagnostics");
 const diff_informed_analysis_utils_1 = require("./diff-informed-analysis-utils");
@@ -61,10 +60,9 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const overlay_database_utils_1 = require("./overlay-database-utils");
 const repository_1 = require("./repository");
-const tools_features_1 = require("./tools-features");
 const tracer_config_1 = require("./tracer-config");
-const upload_lib_1 = require("./upload-lib");
 const util = __importStar(require("./util"));
 const util_1 = require("./util");
 class CodeQLAnalysisError extends Error {
@@ -93,14 +91,13 @@ async function runExtraction(codeql, config, logger) {
             logger.debug(`Database for ${language} has already been finalized, skipping extraction.`);
             continue;
         }
-        if (shouldExtractLanguage(config, language)) {
+        if (await shouldExtractLanguage(codeql, config, language)) {
             logger.startGroup(`Extracting ${language}`);
-            if (language === languages_1.Language.python) {
+            if (language === languages_1.KnownLanguage.python) {
                 await setupPythonExtractor(logger);
             }
-            if (config.buildMode &&
-                (await codeql.supportsFeature(tools_features_1.ToolsFeature.TraceCommandUseBuildMode))) {
-                if (language === languages_1.Language.cpp &&
+            if (config.buildMode) {
+                if (language === languages_1.KnownLanguage.cpp &&
                     config.buildMode === util_1.BuildMode.Autobuild) {
                     await (0, autobuild_1.setupCppAutobuild)(codeql, logger);
                 }
@@ -108,7 +105,8 @@ async function runExtraction(codeql, config, logger) {
                 // database scratch directory by default. For dependency caching purposes, we want
                 // a stable path that caches can be restored into and that we can cache at the
                 // end of the workflow (i.e. that does not get removed when the scratch directory is).
-                if (language === languages_1.Language.java && config.buildMode === util_1.BuildMode.None) {
+                if (language === languages_1.KnownLanguage.java &&
+                    config.buildMode === util_1.BuildMode.None) {
                     process.env["CODEQL_EXTRACTOR_JAVA_OPTION_BUILDLESS_DEPENDENCY_DIR"] =
                         (0, dependency_caching_1.getJavaTempDependencyDir)();
                 }
@@ -121,11 +119,11 @@ async function runExtraction(codeql, config, logger) {
         }
     }
 }
-function shouldExtractLanguage(config, language) {
+async function shouldExtractLanguage(codeql, config, language) {
     return (config.buildMode === util_1.BuildMode.None ||
         (config.buildMode === util_1.BuildMode.Autobuild &&
             process.env[environment_1.EnvVar.AUTOBUILD_DID_COMPLETE_SUCCESSFULLY] !== "true") ||
-        (!config.buildMode && (0, languages_1.isScannedLanguage)(language)));
+        (!config.buildMode && (await codeql.isScannedLanguage(language))));
 }
 function dbIsFinalized(config, language, logger) {
     const dbPath = util.getCodeQLDatabasePath(config, language);
@@ -248,7 +246,7 @@ function getDiffRanges(fileDiff, logger) {
     // uses forward slashes as the path separator, so on Windows we need to
     // replace any backslashes with forward slashes.
     const filename = path
-        .join(actionsUtil.getRequiredInput("checkout_path"), fileDiff.filename)
+        .join((0, actions_util_1.getRequiredInput)("checkout_path"), fileDiff.filename)
         .replaceAll(path.sep, "/");
     if (fileDiff.patch === undefined) {
         if (fileDiff.changes === 0) {
@@ -342,8 +340,13 @@ function writeDiffRangeDataExtensionPack(logger, ranges) {
         // range to a non-empty list that cannot match any alert location.
         ranges = [{ path: "", startLine: 0, endLine: 0 }];
     }
-    const diffRangeDir = path.join(actionsUtil.getTemporaryDirectory(), "pr-diff-range");
-    fs.mkdirSync(diffRangeDir);
+    const diffRangeDir = path.join((0, actions_util_1.getTemporaryDirectory)(), "pr-diff-range");
+    // We expect the Actions temporary directory to already exist, so are mainly
+    // using `recursive: true` to avoid errors if the directory already exists,
+    // for example if the analyze Action is run multiple times in the same job.
+    // This is not really something that is supported, but we make use of it in
+    // tests.
+    fs.mkdirSync(diffRangeDir, { recursive: true });
     fs.writeFileSync(path.join(diffRangeDir, "qlpack.yml"), `
 name: codeql-action/pr-diff-range
 version: 0.0.0
@@ -383,25 +386,68 @@ extensions:
     (0, diff_informed_analysis_utils_1.writeDiffRangesJsonFile)(logger, ranges);
     return diffRangeDir;
 }
+// A set of default query suite names that are understood by the CLI.
+exports.defaultSuites = new Set([
+    "security-experimental",
+    "security-extended",
+    "security-and-quality",
+    "code-quality",
+    "code-scanning",
+]);
+/**
+ * If `maybeSuite` is the name of a default query suite, it is resolved into the corresponding
+ * query suite name for the given `language`. Otherwise, `maybeSuite` is returned as is.
+ *
+ * @param language The language for which to resolve the default query suite name.
+ * @param maybeSuite The string that potentially contains the name of a default query suite.
+ * @returns Returns the resolved query suite name, or the unmodified input.
+ */
+function resolveQuerySuiteAlias(language, maybeSuite) {
+    if (exports.defaultSuites.has(maybeSuite)) {
+        return `${language}-${maybeSuite}.qls`;
+    }
+    return maybeSuite;
+}
 // Runs queries and creates sarif files in the given folder
-async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, cleanupLevel, diffRangePackDir, automationDetailsId, config, logger, features) {
+async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, diffRangePackDir, automationDetailsId, codeql, config, logger, features) {
     const statusReport = {};
     const queryFlags = [memoryFlag, threadsFlag];
-    if (cleanupLevel !== "overlay") {
+    const incrementalMode = [];
+    // Preserve cached intermediate results for overlay-base databases.
+    if (config.augmentationProperties.overlayDatabaseMode !==
+        overlay_database_utils_1.OverlayDatabaseMode.OverlayBase) {
         queryFlags.push("--expect-discarded-cache");
     }
     statusReport.analysis_is_diff_informed = diffRangePackDir !== undefined;
     if (diffRangePackDir) {
         queryFlags.push(`--additional-packs=${diffRangePackDir}`);
         queryFlags.push("--extension-packs=codeql-action/pr-diff-range");
+        incrementalMode.push("diff-informed");
     }
-    const sarifRunPropertyFlag = diffRangePackDir
-        ? "--sarif-run-property=incrementalMode=diff-informed"
+    statusReport.analysis_is_overlay =
+        config.augmentationProperties.overlayDatabaseMode ===
+            overlay_database_utils_1.OverlayDatabaseMode.Overlay;
+    statusReport.analysis_builds_overlay_base_database =
+        config.augmentationProperties.overlayDatabaseMode ===
+            overlay_database_utils_1.OverlayDatabaseMode.OverlayBase;
+    if (config.augmentationProperties.overlayDatabaseMode ===
+        overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
+        incrementalMode.push("overlay");
+    }
+    const sarifRunPropertyFlag = incrementalMode.length > 0
+        ? `--sarif-run-property=incrementalMode=${incrementalMode.join(",")}`
         : undefined;
-    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
     for (const language of config.languages) {
         try {
             const sarifFile = path.join(sarifFolder, `${language}.sarif`);
+            const queries = [];
+            if (config.augmentationProperties.qualityQueriesInput !== undefined) {
+                queries.push(util.getGeneratedSuitePath(config, language));
+                for (const qualityQuery of config.augmentationProperties
+                    .qualityQueriesInput) {
+                    queries.push(resolveQuerySuiteAlias(language, qualityQuery.uses));
+                }
+            }
             // The work needed to generate the query suites
             // is done in the CLI. We just need to make a single
             // call to run all the queries for each language and
@@ -409,7 +455,7 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
             logger.startGroup(`Running queries for ${language}`);
             const startTimeRunQueries = new Date().getTime();
             const databasePath = util.getCodeQLDatabasePath(config, language);
-            await codeql.databaseRunQueries(databasePath, queryFlags);
+            await codeql.databaseRunQueries(databasePath, queryFlags, queries);
             logger.debug(`Finished running queries for ${language}.`);
             // TODO should not be using `builtin` here. We should be using `all` instead.
             // The status report does not support `all` yet.
@@ -417,14 +463,24 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
                 new Date().getTime() - startTimeRunQueries;
             logger.startGroup(`Interpreting results for ${language}`);
             const startTimeInterpretResults = new Date();
-            const analysisSummary = await runInterpretResults(language, undefined, sarifFile, config.debugMode);
+            const analysisSummary = await runInterpretResults(language, undefined, sarifFile, config.debugMode, automationDetailsId);
+            let qualityAnalysisSummary;
+            if (config.augmentationProperties.qualityQueriesInput !== undefined) {
+                logger.info(`Interpreting quality results for ${language}`);
+                const qualityCategory = (0, actions_util_1.fixCodeQualityCategory)(logger, automationDetailsId);
+                const qualitySarifFile = path.join(sarifFolder, `${language}.quality.sarif`);
+                qualityAnalysisSummary = await runInterpretResults(language, config.augmentationProperties.qualityQueriesInput.map((i) => resolveQuerySuiteAlias(language, i.uses)), qualitySarifFile, config.debugMode, qualityCategory);
+            }
             const endTimeInterpretResults = new Date();
             statusReport[`interpret_results_${language}_duration_ms`] =
                 endTimeInterpretResults.getTime() - startTimeInterpretResults.getTime();
             logger.endGroup();
             logger.info(analysisSummary);
+            if (qualityAnalysisSummary) {
+                logger.info(qualityAnalysisSummary);
+            }
             if (await features.getValue(feature_flags_1.Feature.QaTelemetryEnabled)) {
-                const perQueryAlertCounts = getPerQueryAlertCounts(sarifFile, logger);
+                const perQueryAlertCounts = getPerQueryAlertCounts(sarifFile);
                 const perQueryAlertCountEventReport = {
                     event: "codeql database interpret-results",
                     started_at: startTimeInterpretResults.toISOString(),
@@ -447,13 +503,12 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
         }
     }
     return statusReport;
-    async function runInterpretResults(language, queries, sarifFile, enableDebugLogging) {
+    async function runInterpretResults(language, queries, sarifFile, enableDebugLogging, category) {
         const databasePath = util.getCodeQLDatabasePath(config, language);
-        return await codeql.databaseInterpretResults(databasePath, queries, sarifFile, addSnippetsFlag, threadsFlag, enableDebugLogging ? "-vv" : "-v", sarifRunPropertyFlag, automationDetailsId, config, features);
+        return await codeql.databaseInterpretResults(databasePath, queries, sarifFile, addSnippetsFlag, threadsFlag, enableDebugLogging ? "-vv" : "-v", sarifRunPropertyFlag, category, config, features);
     }
     /** Get an object with all queries and their counts parsed from a SARIF file path. */
-    function getPerQueryAlertCounts(sarifPath, log) {
-        (0, upload_lib_1.validateSarifFileSchema)(sarifPath, log);
+    function getPerQueryAlertCounts(sarifPath) {
         const sarifObject = JSON.parse(fs.readFileSync(sarifPath, "utf8"));
         // We do not need to compute fingerprints because we are not sending data based off of locations.
         // Generate the query: alert count object
@@ -502,7 +557,7 @@ async function warnIfGoInstalledAfterInit(config, logger) {
         const goBinaryPath = await io.which("go", true);
         if (goInitPath !== goBinaryPath) {
             logger.warning(`Expected \`which go\` to return ${goInitPath}, but got ${goBinaryPath}: please ensure that the correct version of Go is installed before the \`codeql-action/init\` Action is used.`);
-            (0, diagnostics_1.addDiagnostic)(config, languages_1.Language.go, (0, diagnostics_1.makeDiagnostic)("go/workflow/go-installed-after-codeql-init", "Go was installed after the `codeql-action/init` Action was run", {
+            (0, diagnostics_1.addDiagnostic)(config, languages_1.KnownLanguage.go, (0, diagnostics_1.makeDiagnostic)("go/workflow/go-installed-after-codeql-init", "Go was installed after the `codeql-action/init` Action was run", {
                 markdownMessage: "To avoid interfering with the CodeQL analysis, perform all installation steps before calling the `github/codeql-action/init` Action.",
                 visibility: {
                     statusPage: true,
@@ -514,15 +569,6 @@ async function warnIfGoInstalledAfterInit(config, logger) {
         }
     }
 }
-async function runCleanup(config, cleanupLevel, logger) {
-    logger.startGroup("Cleaning up databases");
-    for (const language of config.languages) {
-        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-        const databasePath = util.getCodeQLDatabasePath(config, language);
-        await codeql.databaseCleanup(databasePath, cleanupLevel);
-    }
-    logger.endGroup();
-}
 exports.exportedForTesting = {
     getDiffRanges,
 };

lib/analyze.test.js

@@ -63,10 +63,9 @@ const util = __importStar(require("./util"));
         const addSnippetsFlag = "";
         const threadsFlag = "";
         sinon.stub(uploadLib, "validateSarifFileSchema");
-        for (const language of Object.values(languages_1.Language)) {
-            (0, codeql_1.setCodeQL)({
+        for (const language of Object.values(languages_1.KnownLanguage)) {
+            const codeql = (0, codeql_1.createStubCodeQL)({
                 databaseRunQueries: async () => { },
-                packDownload: async () => ({ packs: [] }),
                 databaseInterpretResults: async (_db, _queriesRun, sarifFile) => {
                     fs.writeFileSync(sarifFile, JSON.stringify({
                         runs: [
@@ -114,9 +113,11 @@ const util = __importStar(require("./util"));
             fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
                 recursive: true,
             });
-            const statusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, "brutal", undefined, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
+            const statusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, undefined, codeql, config, (0, logging_1.getRunnerLogger)(true), (0, testing_utils_1.createFeatures)([feature_flags_1.Feature.QaTelemetryEnabled]));
             t.deepEqual(Object.keys(statusReport).sort(), [
+                "analysis_builds_overlay_base_database",
                 "analysis_is_diff_informed",
+                "analysis_is_overlay",
                 `analyze_builtin_queries_${language}_duration_ms`,
                 "event_reports",
                 `interpret_results_${language}_duration_ms`,
@@ -313,4 +314,17 @@ function runGetDiffRanges(changes, patch) {
     const diffRanges = runGetDiffRanges(2, ["@@ 30 +50,2 @@", "+1", "+2"]);
     t.deepEqual(diffRanges, undefined);
 });
+(0, ava_1.default)("resolveQuerySuiteAlias", (t) => {
+    // default query suite names should resolve to something language-specific ending in `.qls`.
+    for (const suite of analyze_1.defaultSuites) {
+        const resolved = (0, analyze_1.resolveQuerySuiteAlias)(languages_1.KnownLanguage.go, suite);
+        t.assert(resolved.endsWith(".qls"), "Resolved default suite doesn't end in .qls");
+        t.assert(resolved.indexOf(languages_1.KnownLanguage.go) >= 0, "Resolved default suite doesn't contain language name");
+    }
+    // other inputs should be returned unchanged
+    const names = ["foo", "bar", "codeql/go-queries@1.0"];
+    for (const name of names) {
+        t.deepEqual((0, analyze_1.resolveQuerySuiteAlias)(languages_1.KnownLanguage.go, name), name);
+    }
+});
 //# sourceMappingURL=analyze.test.js.map

lib/api-compatibility.json

@@ -1 +1 @@
-{ "maximumVersion": "3.17", "minimumVersion": "3.12" }
+{ "maximumVersion": "3.18", "minimumVersion": "3.14" }

lib/autobuild.js

@@ -45,11 +45,9 @@ const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const repository_1 = require("./repository");
-const tools_features_1 = require("./tools-features");
 const util_1 = require("./util");
 async function determineAutobuildLanguages(codeql, config, logger) {
-    if ((config.buildMode === util_1.BuildMode.None &&
-        (await codeql.supportsFeature(tools_features_1.ToolsFeature.TraceCommandUseBuildMode))) ||
+    if (config.buildMode === util_1.BuildMode.None ||
         config.buildMode === util_1.BuildMode.Manual) {
         logger.info(`Using build mode "${config.buildMode}", nothing to autobuild. ` +
             `See ${doc_url_1.DocUrl.CODEQL_BUILD_MODES} for more information.`);
@@ -59,8 +57,8 @@ async function determineAutobuildLanguages(codeql, config, logger) {
     // We want pick the dominant language in the repo from the ones we're able to build
     // The languages are sorted in order specified by user or by lines of code if we got
     // them from the GitHub API, so try to build the first language on the list.
-    const autobuildLanguages = config.languages.filter((l) => (0, languages_1.isTracedLanguage)(l));
-    if (!autobuildLanguages) {
+    const autobuildLanguages = await (0, util_1.asyncFilter)(config.languages, async (language) => await codeql.isTracedLanguage(language));
+    if (autobuildLanguages.length === 0) {
         logger.info("None of the languages in this project require extra build steps");
         return undefined;
     }
@@ -91,7 +89,7 @@ async function determineAutobuildLanguages(codeql, config, logger) {
      * This special case behavior should be removed as part of the next major
      * version of the CodeQL Action.
      */
-    const autobuildLanguagesWithoutGo = autobuildLanguages.filter((l) => l !== languages_1.Language.go);
+    const autobuildLanguagesWithoutGo = autobuildLanguages.filter((l) => l !== languages_1.KnownLanguage.go);
     const languages = [];
     // First run the autobuilder for the first non-Go traced language, if one
     // exists.
@@ -101,7 +99,7 @@ async function determineAutobuildLanguages(codeql, config, logger) {
     // If Go is requested, run the Go autobuilder last to ensure it doesn't
     // interfere with the other autobuilder.
     if (autobuildLanguages.length !== autobuildLanguagesWithoutGo.length) {
-        languages.push(languages_1.Language.go);
+        languages.push(languages_1.KnownLanguage.go);
     }
     logger.debug(`Will autobuild ${languages.join(" and ")}.`);
     // In general the autobuilders for other traced languages may conflict with
@@ -147,17 +145,16 @@ async function setupCppAutobuild(codeql, logger) {
 async function runAutobuild(config, language, logger) {
     logger.startGroup(`Attempting to automatically build ${language} code`);
     const codeQL = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-    if (language === languages_1.Language.cpp) {
+    if (language === languages_1.KnownLanguage.cpp) {
         await setupCppAutobuild(codeQL, logger);
     }
-    if (config.buildMode &&
-        (await codeQL.supportsFeature(tools_features_1.ToolsFeature.TraceCommandUseBuildMode))) {
+    if (config.buildMode) {
         await codeQL.extractUsingBuildMode(config, language);
     }
     else {
         await codeQL.runAutobuild(config, language);
     }
-    if (language === languages_1.Language.go) {
+    if (language === languages_1.KnownLanguage.go) {
         core.exportVariable(environment_1.EnvVar.DID_AUTOBUILD_GOLANG, "true");
     }
     logger.endGroup();

lib/autobuild.js.map

@@ -1 +1 @@
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+{"version":3,"file":"autobuild.js","sourceRoot":"","sources":["../src/autobuild.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAcA,kEAkGC;AAED,8CAmCC;AAED,oCAmBC;AA1KD,oDAAsC;AAEtC,iDAA6E;AAC7E,6CAAgD;AAChD,qCAA6C;AAE7C,uCAAmC;AACnC,+CAAuC;AACvC,mDAAmE;AACnE,2CAAsD;AAEtD,6CAAgD;AAChD,iCAAgD;AAEzC,KAAK,UAAU,2BAA2B,CAC/C,MAAc,EACd,MAA0B,EAC1B,MAAc;IAEd,IACE,MAAM,CAAC,SAAS,KAAK,gBAAS,CAAC,IAAI;QACnC,MAAM,CAAC,SAAS,KAAK,gBAAS,CAAC,MAAM,EACrC,CAAC;QACD,MAAM,CAAC,IAAI,CACT,qBAAqB,MAAM,CAAC,SAAS,2BAA2B;YAC9D,OAAO,gBAAM,CAAC,kBAAkB,wBAAwB,CAC3D,CAAC;QACF,OAAO,SAAS,CAAC;IACnB,CAAC;IAED,0CAA0C;IAC1C,mFAAmF;IACnF,oFAAoF;IACpF,4EAA4E;IAC5E,MAAM,kBAAkB,GAAG,MAAM,IAAA,kBAAW,EAC1C,MAAM,CAAC,SAAS,EAChB,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,MAAM,MAAM,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAC5D,CAAC;IAEF,IAAI,kBAAkB,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACpC,MAAM,CAAC,IAAI,CACT,iEAAiE,CAClE,CAAC;QACF,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;;;;;;;;;;;;;;;;;;;;;;OA0BG;IACH,MAAM,2BAA2B,GAAG,kBAAkB,CAAC,MAAM,CAC3D,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,yBAAa,CAAC,EAAE,CAC9B,CAAC;IAEF,MAAM,SAAS,GAAe,EAAE,CAAC;IACjC,yEAAyE;IACzE,UAAU;IACV,IAAI,2BAA2B,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;QACjD,SAAS,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC,CAAC,CAAC,CAAC;IACjD,CAAC;IACD,uEAAuE;IACvE,wCAAwC;IACxC,IAAI,kBAAkB,CAAC,MAAM,KAAK,2BAA2B,CAAC,MAAM,EAAE,CAAC;QACrE,SAAS,CAAC,IAAI,CAAC,yBAAa,CAAC,EAAE,CAAC,CAAC;IACnC,CAAC;IAED,MAAM,CAAC,KAAK,CAAC,kBAAkB,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAE3D,2EAA2E;IAC3E,4EAA4E;IAC5E,2CAA2C;IAC3C,uEAAuE;IACvE,2EAA2E;IAC3E,uEAAuE;IACvE,yCAAyC;IACzC,IAAI,2BAA2B,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3C,MAAM,CAAC,OAAO,CACZ,oCAAoC,SAAS,CAAC,IAAI,CAChD,OAAO,CACR,8BAA8B,2BAA2B;aACvD,KAAK,CAAC,CAAC,CAAC;aACR,IAAI,CACH,OAAO,CACR,kFAAkF;YACnF,OAAO,gBAAM,CAAC,4BAA4B,wBAAwB,CACrE,CAAC;IACJ,CAAC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAEM,KAAK,UAAU,iBAAiB,CAAC,MAAc,EAAE,MAAc;IACpE,MAAM,MAAM,GAAG,6BAAa,CAAC,uBAAO,CAAC,yBAAyB,CAAC,CAAC,MAAM,CAAC;IACvE,MAAM,WAAW,GAAG,4CAA4C,CAAC;IACjE,MAAM,aAAa,GAAG,MAAM,IAAA,6BAAgB,GAAE,CAAC;IAC/C,MAAM,aAAa,GAAG,IAAA,6BAAgB,GAAE,CAAC;IACzC,MAAM,QAAQ,GAAG,IAAI,wBAAQ,CAC3B,aAAa,EACb,aAAa,EACb,IAAA,oCAAqB,GAAE,EACvB,MAAM,CACP,CAAC;IACF,IAAI,MAAM,QAAQ,CAAC,QAAQ,CAAC,uBAAO,CAAC,yBAAyB,EAAE,MAAM,CAAC,EAAE,CAAC;QACvE,yEAAyE;QACzE,IACE,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,KAAK,aAAa;YACnD,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,MAAM,EAC9B,CAAC;YACD,MAAM,CAAC,IAAI,CACT,aAAa,WAAW,sCACtB,IAAA,mCAAoB,GAAE,KAAK,SAAS;gBAClC,CAAC,CAAC,8BAA8B,MAAM,yDAAyD,gBAAM,CAAC,oBAAoB,wBAAwB;gBAClJ,CAAC,CAAC,EACN,EAAE,CACH,CAAC;YACF,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;QACvC,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,IAAI,CACT,YAAY,WAAW,yCAAyC,MAAM,yCAAyC,gBAAM,CAAC,oBAAoB,wBAAwB,CACnK,CAAC;YACF,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACtC,CAAC;IACH,CAAC;SAAM,CAAC;QACN,MAAM,CAAC,IAAI,CAAC,aAAa,WAAW,GAAG,CAAC,CAAC;QACzC,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACvC,CAAC;AACH,CAAC;AAEM,KAAK,UAAU,YAAY,CAChC,MAA0B,EAC1B,QAAkB,EAClB,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,qCAAqC,QAAQ,OAAO,CAAC,CAAC;IACxE,MAAM,MAAM,GAAG,MAAM,IAAA,kBAAS,EAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IACjD,IAAI,QAAQ,KAAK,yBAAa,CAAC,GAAG,EAAE,CAAC;QACnC,MAAM,iBAAiB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC1C,CAAC;IACD,IAAI,MAAM,CAAC,SAAS,EAAE,CAAC;QACrB,MAAM,MAAM,CAAC,qBAAqB,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;IACvD,CAAC;SAAM,CAAC;QACN,MAAM,MAAM,CAAC,YAAY,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;IAC9C,CAAC;IACD,IAAI,QAAQ,KAAK,yBAAa,CAAC,EAAE,EAAE,CAAC;QAClC,IAAI,CAAC,cAAc,CAAC,oBAAM,CAAC,oBAAoB,EAAE,MAAM,CAAC,CAAC;IAC3D,CAAC;IACD,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC"}

lib/cli-errors.js

@@ -1,11 +1,16 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.cliErrorsConfig = exports.CliConfigErrorCategory = exports.CliError = void 0;
-exports.getCliConfigCategoryIfExists = getCliConfigCategoryIfExists;
 exports.wrapCliConfigurationError = wrapCliConfigurationError;
 const actions_util_1 = require("./actions-util");
 const doc_url_1 = require("./doc-url");
 const util_1 = require("./util");
+const SUPPORTED_PLATFORMS = [
+    ["linux", "x64"],
+    ["win32", "x64"],
+    ["darwin", "x64"],
+    ["darwin", "arm64"],
+];
 /**
  * An error from a CodeQL CLI invocation, with associated exit code, stderr, etc.
  */
@@ -124,6 +129,7 @@ var CliConfigErrorCategory;
     CliConfigErrorCategory["NoSourceCodeSeen"] = "NoSourceCodeSeen";
     CliConfigErrorCategory["NoSupportedBuildCommandSucceeded"] = "NoSupportedBuildCommandSucceeded";
     CliConfigErrorCategory["NoSupportedBuildSystemDetected"] = "NoSupportedBuildSystemDetected";
+    CliConfigErrorCategory["NotFoundInRegistry"] = "NotFoundInRegistry";
     CliConfigErrorCategory["OutOfMemoryOrDisk"] = "OutOfMemoryOrDisk";
     CliConfigErrorCategory["PackCannotBeFound"] = "PackCannotBeFound";
     CliConfigErrorCategory["PackMissingAuth"] = "PackMissingAuth";
@@ -150,7 +156,7 @@ exports.cliErrorsConfig = {
     },
     [CliConfigErrorCategory.GradleBuildFailed]: {
         cliErrorMessageCandidates: [
-            new RegExp("[autobuild] FAILURE: Build failed with an exception."),
+            new RegExp("\\[autobuild\\] FAILURE: Build failed with an exception."),
         ],
     },
     // Version of CodeQL CLI is incompatible with this version of the CodeQL Action
@@ -243,6 +249,11 @@ exports.cliErrorsConfig = {
             new RegExp("does not support the .* build mode. Please try using one of the following build modes instead"),
         ],
     },
+    [CliConfigErrorCategory.NotFoundInRegistry]: {
+        cliErrorMessageCandidates: [
+            new RegExp("'.*' not found in the registry '.*'"),
+        ],
+    },
 };
 /**
  * Check if the given CLI error or exit code, if applicable, apply to any known
@@ -266,11 +277,29 @@ function getCliConfigCategoryIfExists(cliError) {
     return undefined;
 }
 /**
- * Changes an error received from the CLI to a ConfigurationError with optionally an extra
- * error message appended, if it exists in a known set of configuration errors. Otherwise,
+ * Check if we are running on an unsupported platform/architecture combination.
+ */
+function isUnsupportedPlatform() {
+    return !SUPPORTED_PLATFORMS.some(([platform, arch]) => platform === process.platform && arch === process.arch);
+}
+/**
+ * Transform a CLI error into a ConfigurationError for an unsupported platform.
+ */
+function getUnsupportedPlatformError(cliError) {
+    return new util_1.ConfigurationError("The CodeQL CLI does not support the platform/architecture combination of " +
+        `${process.platform}/${process.arch} ` +
+        `(see ${doc_url_1.DocUrl.SYSTEM_REQUIREMENTS}). ` +
+        `The underlying error was: ${cliError.message}`);
+}
+/**
+ * Changes an error received from the CLI to a ConfigurationError with the message
+ * optionally being transformed, if it is a known configuration error. Otherwise,
  * simply returns the original error.
  */
 function wrapCliConfigurationError(cliError) {
+    if (isUnsupportedPlatform()) {
+        return getUnsupportedPlatformError(cliError);
+    }
     const cliConfigErrorCategory = getCliConfigCategoryIfExists(cliError);
     if (cliConfigErrorCategory === undefined) {
         return cliError;

lib/cli-errors.test.js

@@ -0,0 +1,220 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const sinon = __importStar(require("sinon"));
+const actions_util_1 = require("./actions-util");
+const cli_errors_1 = require("./cli-errors");
+const testing_utils_1 = require("./testing-utils");
+const util_1 = require("./util");
+(0, testing_utils_1.setupTests)(ava_1.default);
+(0, ava_1.default)("CliError constructor with fatal errors", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "finalize"], 32, "Running TRAP import for CodeQL database...\nA fatal error occurred: Evaluator heap must be at least 384.00 MiB\nA fatal error occurred: Dataset import failed with code 2");
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.is(cliError.exitCode, 32);
+    t.is(cliError.stderr, "Running TRAP import for CodeQL database...\nA fatal error occurred: Evaluator heap must be at least 384.00 MiB\nA fatal error occurred: Dataset import failed with code 2");
+    t.true(cliError.message.includes("A fatal error occurred: Dataset import failed with code 2."));
+    t.true(cliError.message.includes("Context: A fatal error occurred: Evaluator heap must be at least 384.00 MiB."));
+});
+(0, ava_1.default)("CliError constructor with single fatal error", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "A fatal error occurred: Out of memory");
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.is(cliError.exitCode, 1);
+    t.true(cliError.message.includes("A fatal error occurred: Out of memory"));
+    t.false(cliError.message.includes("Context:"));
+});
+(0, ava_1.default)("CliError constructor with autobuild errors", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "[autobuild] [ERROR] Build failed\n[autobuild] [ERROR] Compilation error");
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.is(cliError.exitCode, 1);
+    t.true(cliError.message.includes("We were unable to automatically build your code"));
+    t.true(cliError.message.includes("Build failed\nCompilation error"));
+});
+(0, ava_1.default)("CliError constructor with truncated autobuild errors", (t) => {
+    const stderr = Array.from({ length: 12 }, (_, i) => `[autobuild] [ERROR] Error ${i + 1}`).join("\n");
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, stderr);
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.true(cliError.message.includes("(truncated)"));
+    // Should only include first 10 errors plus truncation message
+    const errorLines = cliError.message
+        .split("Encountered the following error: ")[1]
+        .split("\n");
+    t.is(errorLines.length, 11); // 10 errors + "(truncated)"
+});
+(0, ava_1.default)("CliError constructor with generic error", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "Some generic error message\nLast line of error");
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.is(cliError.exitCode, 1);
+    t.true(cliError.message.includes('Encountered a fatal error while running "codeql version"'));
+    t.true(cliError.message.includes("Exit code was 1 and last log line was: Last line of error."));
+});
+(0, ava_1.default)("CliError constructor with empty stderr", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "");
+    const cliError = new cli_errors_1.CliError(commandError);
+    t.true(cliError.message.includes("last log line was: n/a"));
+});
+for (const [platform, arch] of [
+    ["weird_plat", "x64"],
+    ["linux", "arm64"],
+    ["win32", "arm64"],
+]) {
+    (0, ava_1.default)(`wrapCliConfigurationError - ${platform}/${arch} unsupported`, (t) => {
+        sinon.stub(process, "platform").value(platform);
+        sinon.stub(process, "arch").value(arch);
+        const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "Some error");
+        const cliError = new cli_errors_1.CliError(commandError);
+        const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+        t.true(wrappedError instanceof util_1.ConfigurationError);
+        t.true(wrappedError.message.includes("CodeQL CLI does not support the platform/architecture combination"));
+        t.true(wrappedError.message.includes(`${platform}/${arch}`));
+    });
+}
+(0, ava_1.default)("wrapCliConfigurationError - supported platform", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "Some error");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    // Should return the original error since platform is supported
+    t.is(wrappedError, cliError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - autobuild error", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "We were unable to automatically build your code");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+    t.true(wrappedError.message.includes("We were unable to automatically build your code"));
+});
+(0, ava_1.default)("wrapCliConfigurationError - init called twice", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "Refusing to create databases /some/path but could not process any of it");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+    t.true(wrappedError.message.includes('Is the "init" action called twice in the same job?'));
+});
+(0, ava_1.default)("wrapCliConfigurationError - no source code seen by exit code", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "finalize"], 32, "Some other error message");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - no source code seen by message", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "finalize"], 1, "CodeQL detected code written in JavaScript but could not process any of it");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - out of memory error with additional message", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "analyze"], 1, "CodeQL is out of memory.");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+    t.true(wrappedError.message.includes("For more information, see https://gh.io/troubleshooting-code-scanning/out-of-disk-or-memory"));
+});
+(0, ava_1.default)("wrapCliConfigurationError - gradle build failed", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "[autobuild] FAILURE: Build failed with an exception.");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - maven build failed", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "[autobuild] [ERROR] Failed to execute goal");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - swift build failed", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "[autobuilder/build] [build-command-failed] `autobuild` failed to run the build command");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - pack cannot be found", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["pack", "install"], 1, "Query pack my-pack cannot be found. Check the spelling of the pack.");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - pack missing auth", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["pack", "download"], 1, "GitHub Container registry returned 403 Forbidden");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - invalid config file", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["database", "create"], 1, "Config file .codeql/config.yml is not valid");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - incompatible CLI version", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "is not compatible with this CodeQL CLI");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    t.true(wrappedError instanceof util_1.ConfigurationError);
+});
+(0, ava_1.default)("wrapCliConfigurationError - unknown error remains unchanged", (t) => {
+    const commandError = new actions_util_1.CommandInvocationError("codeql", ["version"], 1, "Some unknown error that doesn't match any patterns");
+    const cliError = new cli_errors_1.CliError(commandError);
+    const wrappedError = (0, cli_errors_1.wrapCliConfigurationError)(cliError);
+    // Should return the original CliError since it doesn't match any known patterns
+    t.is(wrappedError, cliError);
+    t.true(wrappedError instanceof cli_errors_1.CliError);
+    t.false(wrappedError instanceof util_1.ConfigurationError);
+});
+// Test all error categories to ensure they're properly configured
+(0, ava_1.default)("all CLI config error categories have valid configurations", (t) => {
+    const allCategories = Object.values(cli_errors_1.CliConfigErrorCategory);
+    for (const category of allCategories) {
+        // Each category should be a string
+        t.is(typeof category, "string");
+        // Create a test error that matches this category
+        let testError;
+        switch (category) {
+            case cli_errors_1.CliConfigErrorCategory.NoSourceCodeSeen:
+                // This category matches by exit code
+                testError = new cli_errors_1.CliError(new actions_util_1.CommandInvocationError("codeql", [], 32, "some error"));
+                break;
+            default:
+                // For other categories, we'll test with a generic message that should not match
+                testError = new cli_errors_1.CliError(new actions_util_1.CommandInvocationError("codeql", [], 1, "generic error"));
+                break;
+        }
+        // The test should not throw an error when processing
+        t.notThrows(() => (0, cli_errors_1.wrapCliConfigurationError)(testError));
+    }
+});
+//# sourceMappingURL=cli-errors.test.js.map

lib/codeql.js

@@ -36,7 +36,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.setupCodeQL = setupCodeQL;
 exports.getCodeQL = getCodeQL;
 exports.setCodeQL = setCodeQL;
-exports.getCachedCodeQL = getCachedCodeQL;
+exports.createStubCodeQL = createStubCodeQL;
 exports.getCodeQLForTesting = getCodeQLForTesting;
 exports.getCodeQLForCmd = getCodeQLForCmd;
 exports.getExtraOptions = getExtraOptions;
@@ -50,11 +50,11 @@ const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const yaml = __importStar(require("js-yaml"));
 const actions_util_1 = require("./actions-util");
 const cli_errors_1 = require("./cli-errors");
+const config_utils_1 = require("./config-utils");
 const doc_url_1 = require("./doc-url");
 const environment_1 = require("./environment");
 const feature_flags_1 = require("./feature-flags");
 const git_utils_1 = require("./git-utils");
-const languages_1 = require("./languages");
 const overlay_database_utils_1 = require("./overlay-database-utils");
 const setupCodeql = __importStar(require("./setup-codeql"));
 const tools_features_1 = require("./tools-features");
@@ -63,7 +63,6 @@ const util = __importStar(require("./util"));
 const util_1 = require("./util");
 /**
  * Stores the CodeQL object, and is populated by `setupCodeQL` or `getCodeQL`.
- * Can be overridden in tests using `setCodeQL`.
  */
 let cachedCodeQL = undefined;
 /**
@@ -74,19 +73,19 @@ let cachedCodeQL = undefined;
  * The version flags below can be used to conditionally enable certain features
  * on versions newer than this.
  */
-const CODEQL_MINIMUM_VERSION = "2.15.5";
+const CODEQL_MINIMUM_VERSION = "2.16.6";
 /**
  * This version will shortly become the oldest version of CodeQL that the Action will run with.
  */
-const CODEQL_NEXT_MINIMUM_VERSION = "2.15.5";
+const CODEQL_NEXT_MINIMUM_VERSION = "2.17.6";
 /**
  * This is the version of GHES that was most recently deprecated.
  */
-const GHES_VERSION_MOST_RECENTLY_DEPRECATED = "3.11";
+const GHES_VERSION_MOST_RECENTLY_DEPRECATED = "3.13";
 /**
  * This is the deprecation date for the version of GHES that was most recently deprecated.
  */
-const GHES_MOST_RECENT_DEPRECATION_DATE = "2024-12-19";
+const GHES_MOST_RECENT_DEPRECATION_DATE = "2025-06-19";
 /** The CLI verbosity level to use for extraction in debug mode. */
 const EXTRACTION_DEBUG_MODE_VERBOSITY = "progress++";
 /*
@@ -113,9 +112,9 @@ const CODEQL_VERSION_CACHE_CLEANUP = "2.17.1";
  *        version requirement. Must be set to true outside tests.
  * @returns a { CodeQL, toolsVersion } object.
  */
-async function setupCodeQL(toolsInput, apiDetails, tempDir, variant, defaultCliVersion, logger, features, checkVersion) {
+async function setupCodeQL(toolsInput, apiDetails, tempDir, variant, defaultCliVersion, logger, checkVersion) {
     try {
-        const { codeqlFolder, toolsDownloadStatusReport, toolsSource, toolsVersion, zstdAvailability, } = await setupCodeql.setupCodeQLBundle(toolsInput, apiDetails, tempDir, variant, features, defaultCliVersion, logger);
+        const { codeqlFolder, toolsDownloadStatusReport, toolsSource, toolsVersion, zstdAvailability, } = await setupCodeql.setupCodeQLBundle(toolsInput, apiDetails, tempDir, variant, defaultCliVersion, logger);
         logger.debug(`Bundle download status report: ${JSON.stringify(toolsDownloadStatusReport)}`);
         let codeqlCmd = path.join(codeqlFolder, "codeql", "codeql");
         if (process.platform === "win32") {
@@ -150,6 +149,16 @@ async function getCodeQL(cmd) {
     }
     return cachedCodeQL;
 }
+/**
+ * Overrides the CodeQL object. Only for use in tests that cannot override
+ * CodeQL via dependency injection.
+ *
+ * Accepts a partial object. Any undefined methods will be implemented
+ * to immediately throw an exception indicating which method is missing.
+ */
+function setCodeQL(codeql) {
+    cachedCodeQL = createStubCodeQL(codeql);
+}
 function resolveFunction(partialCodeql, methodName, defaultImplementation) {
     if (typeof partialCodeql[methodName] !== "function") {
         if (defaultImplementation !== undefined) {
@@ -163,13 +172,13 @@ function resolveFunction(partialCodeql, methodName, defaultImplementation) {
     return partialCodeql[methodName];
 }
 /**
- * Set the functionality for CodeQL methods. Only for use in tests.
+ * Creates a stub CodeQL object. Only for use in tests.
  *
- * Accepts a partial object and any undefined methods will be implemented
+ * Accepts a partial object. Any undefined methods will be implemented
  * to immediately throw an exception indicating which method is missing.
  */
-function setCodeQL(partialCodeql) {
-    cachedCodeQL = {
+function createStubCodeQL(partialCodeql) {
+    return {
         getPath: resolveFunction(partialCodeql, "getPath", () => "/tmp/dummy-path"),
         getVersion: resolveFunction(partialCodeql, "getVersion", async () => ({
             version: "1.0.0",
@@ -177,6 +186,8 @@ function setCodeQL(partialCodeql) {
         printVersion: resolveFunction(partialCodeql, "printVersion"),
         supportsFeature: resolveFunction(partialCodeql, "supportsFeature", async (feature) => !!partialCodeql.getVersion &&
             (0, tools_features_1.isSupportedToolsFeature)(await partialCodeql.getVersion(), feature)),
+        isTracedLanguage: resolveFunction(partialCodeql, "isTracedLanguage"),
+        isScannedLanguage: resolveFunction(partialCodeql, "isScannedLanguage"),
         databaseInitCluster: resolveFunction(partialCodeql, "databaseInitCluster"),
         runAutobuild: resolveFunction(partialCodeql, "runAutobuild"),
         extractScannedLanguage: resolveFunction(partialCodeql, "extractScannedLanguage"),
@@ -184,10 +195,8 @@ function setCodeQL(partialCodeql) {
         finalizeDatabase: resolveFunction(partialCodeql, "finalizeDatabase"),
         resolveLanguages: resolveFunction(partialCodeql, "resolveLanguages"),
         betterResolveLanguages: resolveFunction(partialCodeql, "betterResolveLanguages", async () => ({ aliases: {}, extractors: {} })),
-        resolveQueries: resolveFunction(partialCodeql, "resolveQueries"),
         resolveBuildEnvironment: resolveFunction(partialCodeql, "resolveBuildEnvironment"),
-        packDownload: resolveFunction(partialCodeql, "packDownload"),
-        databaseCleanup: resolveFunction(partialCodeql, "databaseCleanup"),
+        databaseCleanupCluster: resolveFunction(partialCodeql, "databaseCleanupCluster"),
         databaseBundle: resolveFunction(partialCodeql, "databaseBundle"),
         databaseRunQueries: resolveFunction(partialCodeql, "databaseRunQueries"),
         databaseInterpretResults: resolveFunction(partialCodeql, "databaseInterpretResults"),
@@ -195,22 +204,9 @@ function setCodeQL(partialCodeql) {
         databaseExportDiagnostics: resolveFunction(partialCodeql, "databaseExportDiagnostics"),
         diagnosticsExport: resolveFunction(partialCodeql, "diagnosticsExport"),
         resolveExtractor: resolveFunction(partialCodeql, "resolveExtractor"),
+        resolveQueriesStartingPacks: resolveFunction(partialCodeql, "resolveQueriesStartingPacks"),
         mergeResults: resolveFunction(partialCodeql, "mergeResults"),
     };
-    return cachedCodeQL;
-}
-/**
- * Get the cached CodeQL object. Should only be used from tests.
- *
- * TODO: Work out a good way for tests to get this from the test context
- * instead of having to have this method.
- */
-function getCachedCodeQL() {
-    if (cachedCodeQL === undefined) {
-        // Should never happen as setCodeQL is called by testing-utils.setupTests
-        throw new Error("cachedCodeQL undefined");
-    }
-    return cachedCodeQL;
 }
 /**
  * Get a real, newly created CodeQL instance for testing. The instance refers to
@@ -255,34 +251,28 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         async supportsFeature(feature) {
             return (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), feature);
         },
-        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, overlayDatabaseMode, logger) {
+        async isTracedLanguage(language) {
+            const extractorPath = await this.resolveExtractor(language);
+            const tracingConfigPath = path.join(extractorPath, "tools", "tracing-config.lua");
+            return fs.existsSync(tracingConfigPath);
+        },
+        async isScannedLanguage(language) {
+            return !(await this.isTracedLanguage(language));
+        },
+        async databaseInitCluster(config, sourceRoot, processName, qlconfigFile, logger) {
             const extraArgs = config.languages.map((language) => `--language=${language}`);
             if (await (0, tracer_config_1.shouldEnableIndirectTracing)(codeql, config)) {
                 extraArgs.push("--begin-tracing");
                 extraArgs.push(...(await getTrapCachingExtractorConfigArgs(config)));
                 extraArgs.push(`--trace-process-name=${processName}`);
             }
-            if (config.languages.indexOf(languages_1.Language.actions) >= 0) {
-                // We originally added an embedded version of the Actions extractor to the CodeQL Action
-                // itself in order to deploy the extractor between CodeQL releases. When we did add the
-                // extractor to the CLI, though, its autobuild script was missing the execute bit.
-                // 2.20.6 is the first CLI release with the fully-functional extractor in the CLI. For older
-                // versions, we'll keep using the embedded extractor. We can remove the embedded extractor
-                // once 2.20.6 is deployed in the runner images.
-                if (!(await util.codeQlVersionAtLeast(codeql, "2.20.6"))) {
-                    extraArgs.push("--search-path");
-                    const extractorPath = path.resolve(__dirname, "../actions-extractor");
-                    extraArgs.push(extractorPath);
-                }
-            }
-            const codeScanningConfigFile = await generateCodeScanningConfig(config, logger);
+            const codeScanningConfigFile = await writeCodeScanningConfigFile(config, logger);
             const externalRepositoryToken = (0, actions_util_1.getOptionalInput)("external-repository-token");
             extraArgs.push(`--codescanning-config=${codeScanningConfigFile}`);
             if (externalRepositoryToken) {
                 extraArgs.push("--external-repository-token-stdin");
             }
-            if (config.buildMode !== undefined &&
-                (await this.supportsFeature(tools_features_1.ToolsFeature.BuildModeOption))) {
+            if (config.buildMode !== undefined) {
                 extraArgs.push(`--build-mode=${config.buildMode}`);
             }
             if (qlconfigFile !== undefined) {
@@ -291,6 +281,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             const overwriteFlag = (0, tools_features_1.isSupportedToolsFeature)(await this.getVersion(), tools_features_1.ToolsFeature.ForceOverwrite)
                 ? "--force-overwrite"
                 : "--overwrite";
+            const overlayDatabaseMode = config.augmentationProperties.overlayDatabaseMode;
             if (overlayDatabaseMode === overlay_database_utils_1.OverlayDatabaseMode.Overlay) {
                 const overlayChangesFile = await (0, overlay_database_utils_1.writeOverlayChangesFile)(config, sourceRoot, logger);
                 extraArgs.push(`--overlay-changes=${overlayChangesFile}`);
@@ -427,25 +418,6 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 throw new Error(`Unexpected output from codeql resolve languages with --format=betterjson: ${e}`);
             }
         },
-        async resolveQueries(queries, extraSearchPath) {
-            const codeqlArgs = [
-                "resolve",
-                "queries",
-                ...queries,
-                "--format=bylanguage",
-                ...getExtraOptionsFromEnv(["resolve", "queries"]),
-            ];
-            if (extraSearchPath !== undefined) {
-                codeqlArgs.push("--additional-packs", extraSearchPath);
-            }
-            const output = await runCli(cmd, codeqlArgs);
-            try {
-                return JSON.parse(output);
-            }
-            catch (e) {
-                throw new Error(`Unexpected output from codeql resolve queries: ${e}`);
-            }
-        },
         async resolveBuildEnvironment(workingDir, language) {
             const codeqlArgs = [
                 "resolve",
@@ -465,7 +437,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 throw new Error(`Unexpected output from codeql resolve build-environment: ${e} in\n${output}`);
             }
         },
-        async databaseRunQueries(databasePath, flags) {
+        async databaseRunQueries(databasePath, flags, queries = []) {
             const codeqlArgs = [
                 "database",
                 "run-queries",
@@ -474,6 +446,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 "--intra-layer-parallelism",
                 "--min-disk-free=1024", // Try to leave at least 1GB free
                 "-v",
+                ...queries,
                 ...getExtraOptionsFromEnv(["database", "run-queries"], {
                     ignoringOptions: ["--expect-discarded-cache"],
                 }),
@@ -534,62 +507,21 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             ];
             return await runCli(cmd, codeqlArgs);
         },
-        /**
-         * Download specified packs into the package cache. If the specified
-         * package and version already exists (e.g., from a previous analysis run),
-         * then it is not downloaded again (unless the extra option `--force` is
-         * specified).
-         *
-         * If no version is specified, then the latest version is
-         * downloaded. The check to determine what the latest version is is done
-         * each time this package is requested.
-         *
-         * Optionally, a `qlconfigFile` is included. If used, then this file
-         * is used to determine which registry each pack is downloaded from.
-         */
-        async packDownload(packs, qlconfigFile) {
-            const qlconfigArg = qlconfigFile
-                ? [`--qlconfig-file=${qlconfigFile}`]
-                : [];
-            const codeqlArgs = [
-                "pack",
-                "download",
-                ...qlconfigArg,
-                "--format=json",
-                "--resolve-query-specs",
-                ...getExtraOptionsFromEnv(["pack", "download"]),
-                ...packs,
-            ];
-            const output = await runCli(cmd, codeqlArgs);
-            try {
-                const parsedOutput = JSON.parse(output);
-                if (Array.isArray(parsedOutput.packs) &&
-                    // TODO PackDownloadOutput will not include the version if it is not specified
-                    // in the input. The version is always the latest version available.
-                    // It should be added to the output, but this requires a CLI change
-                    parsedOutput.packs.every((p) => p.name /* && p.version */)) {
-                    return parsedOutput;
-                }
-                else {
-                    throw new Error("Unexpected output from pack download");
-                }
-            }
-            catch (e) {
-                throw new Error(`Attempted to download specified packs but got an error:\n${output}\n${e}`);
-            }
-        },
-        async databaseCleanup(databasePath, cleanupLevel) {
+        async databaseCleanupCluster(config, cleanupLevel) {
             const cacheCleanupFlag = (await util.codeQlVersionAtLeast(this, CODEQL_VERSION_CACHE_CLEANUP))
                 ? "--cache-cleanup"
                 : "--mode";
-            const codeqlArgs = [
-                "database",
-                "cleanup",
-                databasePath,
-                `${cacheCleanupFlag}=${cleanupLevel}`,
-                ...getExtraOptionsFromEnv(["database", "cleanup"]),
-            ];
-            await runCli(cmd, codeqlArgs);
+            for (const language of config.languages) {
+                const databasePath = util.getCodeQLDatabasePath(config, language);
+                const codeqlArgs = [
+                    "database",
+                    "cleanup",
+                    databasePath,
+                    `${cacheCleanupFlag}=${cleanupLevel}`,
+                    ...getExtraOptionsFromEnv(["database", "cleanup"]),
+                ];
+                await runCli(cmd, codeqlArgs);
+            }
         },
         async databaseBundle(databasePath, outputFilePath, databaseName) {
             const args = [
@@ -657,6 +589,22 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             }).exec();
             return JSON.parse(extractorPath);
         },
+        async resolveQueriesStartingPacks(queries) {
+            const codeqlArgs = [
+                "resolve",
+                "queries",
+                "--format=startingpacks",
+                ...getExtraOptionsFromEnv(["resolve", "queries"]),
+                ...queries,
+            ];
+            const output = await runCli(cmd, codeqlArgs, { noStreamStdout: true });
+            try {
+                return JSON.parse(output);
+            }
+            catch (e) {
+                throw new Error(`Unexpected output from codeql resolve queries --format=startingpacks: ${e}`);
+            }
+        },
         async mergeResults(sarifFiles, outputFile, { mergeRunsFromEqualCategory = false, }) {
             const args = [
                 "github",
@@ -769,53 +717,9 @@ async function runCli(cmd, args = [], opts = {}) {
  * @param config The configuration to use.
  * @returns the path to the generated user configuration file.
  */
-async function generateCodeScanningConfig(config, logger) {
+async function writeCodeScanningConfigFile(config, logger) {
     const codeScanningConfigFile = getGeneratedCodeScanningConfigPath(config);
-    // make a copy so we can modify it
-    const augmentedConfig = (0, util_1.cloneObject)(config.originalUserInput);
-    // Inject the queries from the input
-    if (config.augmentationProperties.queriesInput) {
-        if (config.augmentationProperties.queriesInputCombines) {
-            augmentedConfig.queries = (augmentedConfig.queries || []).concat(config.augmentationProperties.queriesInput);
-        }
-        else {
-            augmentedConfig.queries = config.augmentationProperties.queriesInput;
-        }
-    }
-    if (augmentedConfig.queries?.length === 0) {
-        delete augmentedConfig.queries;
-    }
-    // Inject the packs from the input
-    if (config.augmentationProperties.packsInput) {
-        if (config.augmentationProperties.packsInputCombines) {
-            // At this point, we already know that this is a single-language analysis
-            if (Array.isArray(augmentedConfig.packs)) {
-                augmentedConfig.packs = (augmentedConfig.packs || []).concat(config.augmentationProperties.packsInput);
-            }
-            else if (!augmentedConfig.packs) {
-                augmentedConfig.packs = config.augmentationProperties.packsInput;
-            }
-            else {
-                // At this point, we know there is only one language.
-                // If there were more than one language, an error would already have been thrown.
-                const language = Object.keys(augmentedConfig.packs)[0];
-                augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(config.augmentationProperties.packsInput);
-            }
-        }
-        else {
-            augmentedConfig.packs = config.augmentationProperties.packsInput;
-        }
-    }
-    if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
-        delete augmentedConfig.packs;
-    }
-    augmentedConfig["query-filters"] = [
-        ...(config.augmentationProperties.defaultQueryFilters || []),
-        ...(augmentedConfig["query-filters"] || []),
-    ];
-    if (augmentedConfig["query-filters"]?.length === 0) {
-        delete augmentedConfig["query-filters"];
-    }
+    const augmentedConfig = (0, config_utils_1.generateCodeScanningConfig)(config.originalUserInput, config.augmentationProperties);
     logger.info(`Writing augmented user configuration file to ${codeScanningConfigFile}`);
     logger.startGroup("Augmented user configuration file contents");
     logger.info(yaml.dump(augmentedConfig));