Merge pull request #3357 from github/backport-v3.31.8-1b168cd39

Merge releases/v4 into releases/v3

.github/actions/check-codescanning-config/index.ts

@@ -6,6 +6,16 @@ import * as assert from 'assert'
 
 const actualConfig = loadActualConfig()
 
+function sortConfigArrays(config) {
+  for (const key of Object.keys(config)) {
+    const value = config[key];
+    if (key === 'queries' && Array.isArray(value)) {
+      config[key] = value.sort();
+    }
+  }
+  return config;
+}
+
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
   core.setFailed('No expected configuration provided')
@@ -18,8 +28,8 @@ if (!rawExpectedConfig) {
 const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
 
 assert.deepStrictEqual(
-  actualConfig,
-  expectedConfig,
+  sortConfigArrays(actualConfig),
+  sortConfigArrays(expectedConfig),
   'Expected configuration does not match actual configuration'
 );
 

.github/actions/prepare-test/action.yml

@@ -2,7 +2,7 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
@@ -35,37 +35,34 @@ runs:
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ "$VERSION" == "linked" ]]; then
+        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
+          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ "$VERSION" == "linked" ]]; then
           echo "tools-url=linked" >> "$GITHUB_OUTPUT"
           exit 0
+        elif [[ "$VERSION" == "toolcache" ]]; then
+          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
+          exit 0
         elif [[ "$VERSION" == "default" ]]; then
           echo "tools-url=" >> "$GITHUB_OUTPUT"
           exit 0
         fi
 
-        if [[ "$VERSION" == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
-          extension="tar.zst"
-        else
-          extension="tar.gz"
-        fi
-
         if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
-          artifact_name="codeql-bundle.$extension"
+          artifact_name="codeql-bundle.tar.gz"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
-          artifact_name="codeql-bundle-linux64.$extension"
+          artifact_name="codeql-bundle-linux64.tar.gz"
         elif [[ "$RUNNER_OS" == "macOS" ]]; then
-          artifact_name="codeql-bundle-osx64.$extension"
+          artifact_name="codeql-bundle-osx64.tar.gz"
         elif [[ "$RUNNER_OS" == "Windows" ]]; then
-          artifact_name="codeql-bundle-win64.$extension"
+          artifact_name="codeql-bundle-win64.tar.gz"
         else
           echo "::error::Unrecognized OS $RUNNER_OS"
           exit 1
         fi
 
-        if [[ "$VERSION" == "nightly-latest" ]]; then
-          tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
-          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ "$VERSION" == *"nightly"* ]]; then
+        if [[ "$VERSION" == *"nightly"* ]]; then
           version=`echo "$VERSION" | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ "$VERSION" == *"stable"* ]]; then

.github/actions/release-initialise/action.yml

@@ -16,9 +16,9 @@ runs:
       shell: bash
 
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
-        python-version: 3.12
+        python-version: '3.12'
 
     - name: Install dependencies
       run: |

.github/codeql/codeql-actions-config.yml

@@ -1,4 +0,0 @@
-# Configuration for the CodeQL Actions Queries
-name: "CodeQL Actions Queries config"
-queries:
-  - uses: security-and-quality

.github/codeql/codeql-config-javascript.yml

@@ -7,9 +7,9 @@ queries:
   # we include both even though one is a superset of the
   # other, because we're testing the parsing logic and
   # that the suites exist in the codeql bundle.
+  - uses: security-and-quality
   - uses: security-experimental
   - uses: security-extended
-  - uses: security-and-quality
 paths-ignore:
-  - tests
   - lib
+  - tests

.github/dependabot.yml

@@ -16,22 +16,24 @@ updates:
       - dependency-name: "eslint-plugin-import"
         versions: [">=2.30.0"]
     groups:
-      npm:
+      npm-minor:
         patterns:
           - "*"
+        update-types:
+          - "minor"
+          - "patch"
   - package-ecosystem: github-actions
-    directory: "/"
+    directories:
+      - "/.github/workflows"
+      - "/.github/actions"
     schedule:
       interval: weekly
+    labels:
+      - Rebuild
     groups:
-      actions:
-        patterns:
-          - "*"
-  - package-ecosystem: github-actions
-    directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
-    schedule:
-      interval: weekly
-    groups:
-      actions-setup-swift:
+      actions-minor:
         patterns:
           - "*"
+        update-types:
+          - "minor"
+          - "patch"

.github/pull_request_template.md

@@ -1,4 +1,13 @@
+<!--
+    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
+                      If necessary, link to this PR from an internal issue and include further details there.
 
+    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
+              chose the approach you did if applicable. Indicate any open questions you want to answer
+              during the review process and anything you want reviewers to pay particular attention to.
+
+    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
+-->
 
 ### Risk assessment
 
@@ -7,6 +16,64 @@ For internal use only. Please select the risk level of this change:
 - **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
 - **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
 
+#### Which use cases does this change impact?
+
+<!-- Delete options that don't apply. If in doubt, do not delete an option. -->
+
+Workflow types:
+
+- **Advanced setup** - Impacts users who have custom CodeQL workflows.
+- **Managed** - Impacts users with `dynamic` workflows (Default Setup, CCR, ...).
+
+Products:
+
+- **Code Scanning** - The changes impact analyses when `analysis-kinds: code-scanning`.
+- **Code Quality** - The changes impact analyses when `analysis-kinds: code-quality`.
+- **CCR** - The changes impact analyses for Copilot Code Reviews.
+- **Third-party analyses** - The changes affect the `upload-sarif` action.
+
+Environments:
+
+- **Dotcom** - Impacts CodeQL workflows on `github.com`.
+- **GHES** - Impacts CodeQL workflows on GitHub Enterprise Server.
+- **Testing/None** - This change does not impact any CodeQL workflows in production.
+
+#### How did/will you validate this change?
+
+<!-- Delete options that don't apply. -->
+
+- **Test repository** - This change will be tested on a test repository before merging.
+- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
+- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
+- **Other** - Please provide details.
+- **None** - I am not validating these changes.
+
+#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
+
+<!-- Delete strategies that don't apply. -->
+
+- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
+- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
+- **Other** - Please provide details.
+
+#### How will you know if something goes wrong after this change is released?
+
+<!-- Delete options that don't apply. -->
+
+- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
+    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
+    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
+- **Other** - Please provide details.
+
+#### Are there any special considerations for merging or releasing this change?
+
+<!--
+    Consider whether this change depends on a different change in another repository that should be released first.
+-->
+
+- **No special considerations** - This change can be merged at any time.
+- **Special considerations** - This change should only be merged once certain preconditions are met. Please provide details of those or link to this PR from an internal issue.
+
 ### Merge / deployment checklist
 
 - Confirm this change is backwards compatible with existing workflows.

.github/sizeup.yml

@@ -0,0 +1,55 @@
+labeling:
+  applyCategoryLabels: true
+  categoryLabelPrefix: "size/"
+
+commenting:
+  addCommentWhenScoreThresholdHasBeenExceeded: false
+
+sizeup:
+  categories:
+    - name: extra small
+      lte: 25
+      label:
+        name: XS
+        description: Should be very easy to review
+        color: 3cbf00
+    - name: small
+      lte: 100
+      label:
+        name: S
+        description: Should be easy to review
+        color: 5d9801
+    - name: medium
+      lte: 250
+      label:
+        name: M
+        description: Should be of average difficulty to review
+        color: 7f7203
+    - name: large
+      lte: 500
+      label:
+        name: L
+        description: May be hard to review
+        color: a14c05
+    - name: extra large
+      lte: 1000
+      label:
+        name: XL
+        description: May be very hard to review
+        color: c32607
+    - name: extra extra large
+      label:
+        name: XXL
+        description: May be extremely hard to review
+        color: e50009
+  ignoredFilePatterns:
+    - ".github/workflows/__*"
+    - "lib/**/*"
+    - "package-lock.json"
+  testFilePatterns:
+    - "**/*.test.ts"
+  scoring:
+    # This formula and the aliases below it are written in prefix notation.
+    # For an explanation of how this works, please see:
+    # https://github.com/lerebear/sizeup-core/blob/main/README.md#prefix-notation
+    formula: "- - + additions deletions comments whitespace"

.github/update-release-branch.py

@@ -371,10 +371,10 @@ def main():
       # releases.
       run_git('revert', vOlder_update_commits[0], '--no-edit')
 
-      # Also revert the "Update checked-in dependencies" commit created by Actions.
-      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
-      print(f'  Reverting {update_dependencies_commit}')
-      run_git('revert', update_dependencies_commit, '--no-edit')
+      # Also revert the "Rebuild" commit created by Actions.
+      rebuild_commit = run_git('log', '--grep', '^Rebuild$', '--format=%H').split()[0]
+      print(f'  Reverting {rebuild_commit}')
+      run_git('revert', rebuild_commit, '--no-edit')
 
     else:
       print('  Nothing to revert.')

.github/workflows/__all-platform-bundle.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   all-platform-bundle:
     strategy:
@@ -42,7 +58,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: All-platform bundle
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +71,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,10 +80,14 @@ jobs:
           use-all-platform-bundle: 'true'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - id: init
         uses: ./../action/init
         with:
@@ -70,7 +95,6 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__analyze-ref-input.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   analyze-ref-input:
     strategy:
@@ -42,11 +68,8 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +77,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,10 +86,19 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -74,7 +106,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:

.github/workflows/__autobuild-action.yml

@@ -21,9 +21,25 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch:
-    inputs: {}
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
-    inputs: {}
+    inputs:
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-action:
     strategy:
@@ -37,6 +53,7 @@ jobs:
           - os: windows-latest
             version: linked
     name: autobuild-action
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +61,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -52,6 +69,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           languages: csharp
@@ -67,7 +88,6 @@ jobs:
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d csharp ]]; then

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Java to install
         required: false
         default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-direct-tracing-with-working-dir:
     strategy:
@@ -49,6 +55,7 @@ jobs:
           - os: windows-latest
             version: nightly-latest
     name: Autobuild direct tracing (custom working directory)
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -56,7 +63,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -70,7 +77,6 @@ jobs:
           java-version: ${{ inputs.java-version || '17' }}
           distribution: temurin
       - name: Test setup
-        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -82,7 +88,6 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check that indirect tracing is disabled
-        shell: bash
         run: |
           if [[ ! -z "${CODEQL_RUNNER}" ]]; then
             echo "Expected indirect tracing to be disabled, but the" \

.github/workflows/__autobuild-direct-tracing.yml

@@ -1,99 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild direct tracing
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-jobs:
-  autobuild-direct-tracing:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
-    name: Autobuild direct tracing
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v5
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Java
-        uses: actions/setup-java@v5
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
-      - name: Set up Java test repo configuration
-        shell: bash
-        run: |
-          mv * .github ../action/tests/multi-language-repo/
-          mv ../action/tests/multi-language-repo/.github/workflows .github
-          mv ../action/tests/java-repo/* .
-
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: autobuild
-          db-location: ${{ runner.temp }}/customDbLocation
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Check that indirect tracing is disabled
-        shell: bash
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -24,8 +24,14 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  test-autobuild-working-dir:
+  autobuild-working-dir:
     strategy:
       fail-fast: false
       matrix:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Autobuild working directory
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -49,7 +56,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -64,7 +70,6 @@ jobs:
           working-directory: autobuild-dir
       - uses: ./../action/analyze
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d java ]]; then

.github/workflows/__build-mode-autobuild.yml

@@ -21,9 +21,25 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch:
-    inputs: {}
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
   workflow_call:
-    inputs: {}
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-autobuild:
     strategy:
@@ -31,8 +47,15 @@ jobs:
       matrix:
         include:
           - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
             version: nightly-latest
     name: Build mode autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +63,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -48,6 +71,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Java
+        uses: actions/setup-java@v5
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/
@@ -62,6 +90,11 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
+      - name: Install yq
+        if: runner.os == 'Windows'
+        run: |
+          choco install yq -y
+
       - name: Validate database build mode
         run: |
           metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
@@ -71,6 +104,14 @@ jobs:
             exit 1
           fi
 
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
       - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-manual:
     strategy:
@@ -43,6 +59,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode manual
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +67,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,10 +76,14 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
@@ -81,7 +102,6 @@ jobs:
           fi
 
       - name: Build code
-        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze

.github/workflows/__build-mode-none.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-none:
     strategy:
@@ -35,6 +41,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode none
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -42,7 +49,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__build-mode-rollback.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-rollback:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode rollback
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__bundle-from-toolcache.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From toolcache'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  bundle-from-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: toolcache
+    name: 'Bundle: From toolcache'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v6
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache contains CodeQL
+        continue-on-error: true
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length === 0) {
+              throw new Error(`CodeQL could not be found in the toolcache`);
+            }
+      - id: setup-codeql
+        uses: ./../action/setup-codeql
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   bundle-toolcache:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: windows-latest
             version: linked
     name: 'Bundle: Caching checks'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         with:
           script: |
             const fs = require('fs');
@@ -63,7 +70,7 @@ jobs:
       - name: Install @actions/tool-cache
         run: npm install @actions/tool-cache
       - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         with:
           script: |
             const toolcache = require('@actions/tool-cache');
@@ -82,7 +89,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         with:
           script: |
             const toolcache = require('@actions/tool-cache');

.github/workflows/__bundle-zstd.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   bundle-zstd:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: windows-latest
             version: linked
     name: 'Bundle: Zstandard checks'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         with:
           script: |
             const fs = require('fs');
@@ -72,13 +79,13 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: ${{ matrix.os }}-zstd-bundle.sarif
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cleanup-db-cluster-dir:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Clean up database cluster directory
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__config-export.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-export:
     strategy:
@@ -32,17 +38,10 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: Config export
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +49,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -68,13 +67,13 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check config properties appear in SARIF
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__config-input.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-input:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Config input
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,9 +47,9 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm

.github/workflows/__cpp-deptrace-disabled.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-disabled:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -65,8 +71,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - shell: bash
-        run: |
+      - run: |
           if ls /usr/bin/errno; then
             echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
             exit 1

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
@@ -35,6 +41,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -42,7 +49,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -51,7 +58,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -63,8 +69,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - shell: bash
-        run: |
+      - run: |
           if ! ls /usr/bin/errno; then
             echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
           else

.github/workflows/__cpp-deptrace-enabled.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
-        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -65,8 +71,7 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - shell: bash
-        run: |
+      - run: |
           if ! ls /usr/bin/errno; then
             echo "Did not autoinstall errno"
             exit 1

.github/workflows/__diagnostics-export.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   diagnostics-export:
     strategy:
@@ -32,17 +38,10 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: Diagnostic export
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +49,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -64,7 +63,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Add test diagnostics
-        shell: bash
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |
@@ -80,13 +78,13 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostics appear in SARIF
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__export-file-baseline-information.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   export-file-baseline-information:
     strategy:
@@ -47,6 +63,7 @@ jobs:
           - os: windows-latest
             version: nightly-latest
     name: Export file baseline information
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +71,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,29 +80,31 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"

.github/workflows/__extractor-ram-threads.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   extractor-ram-threads:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Extractor ram and threads options test
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -54,7 +61,6 @@ jobs:
           ram: 230
           threads: 1
       - name: Assert Results
-        shell: bash
         run: |
           if [ "${CODEQL_RAM}" != "230" ]; then
             echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"

.github/workflows/__global-proxy.yml

@@ -24,8 +24,14 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  test-proxy:
+  global-proxy:
     strategy:
       fail-fast: false
       matrix:
@@ -35,6 +41,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Proxy test
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +61,7 @@ jobs:
           apt install -y gh
         env: {}
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__go-custom-queries.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-custom-queries:
     strategy:
@@ -45,6 +61,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'Go: Custom queries'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -52,7 +69,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,17 +78,20 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           languages: go
           config-file: ./.github/codeql/custom-queries.yml
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
@@ -43,6 +49,7 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when Go is changed after init step'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +57,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,7 +66,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -68,18 +75,17 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
   # Deliberately change Go after the `init` step
-      - uses: actions/setup-go@v5
+      - uses: actions/setup-go@v6
         with:
           go-version: '1.20'
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
@@ -43,6 +49,7 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when `file` is not installed'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +57,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,7 +66,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -73,14 +80,13 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v7
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
@@ -43,6 +49,7 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: workaround for indirect tracing'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +57,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,7 +66,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -68,11 +75,9 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
             echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
               "CODEQL_ACTION_GO_BINARY environment variable is not set."

.github/workflows/__go-tracing-autobuilder.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-autobuilder:
     strategy:
@@ -60,6 +66,10 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -73,6 +83,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with autobuilder step'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -80,7 +91,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -89,7 +100,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -99,8 +110,7 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
             echo "Expected the Go autobuilder to be run, but the" \
               "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
@@ -60,6 +66,10 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -73,6 +83,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with custom build steps'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -80,7 +91,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -89,7 +100,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -98,11 +109,9 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           # Once we start running Bash 4.2 in all environments, we can replace the
           # `! -z` flag with the more elegant `-v` which confirms that the variable
           # is actually unset and not potentially set to a blank value.

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -34,6 +34,12 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
@@ -60,6 +66,10 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -73,6 +83,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with legacy workflow'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -80,7 +91,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -89,7 +100,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -98,8 +109,7 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-      - shell: bash
-        run: |
+      - run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d go ]]; then
             echo "Did not find a Go database"

.github/workflows/__go.yml

@@ -8,9 +8,6 @@ env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
 on:
-  push:
-    paths:
-      - .github/workflows/__go.yml
   workflow_dispatch:
     inputs:
       go-version:
@@ -18,6 +15,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
 jobs:
   go-custom-queries:
     name: 'Go: Custom queries'
@@ -27,6 +29,7 @@ jobs:
     uses: ./.github/workflows/__go-custom-queries.yml
     with:
       go-version: ${{ inputs.go-version }}
+      dotnet-version: ${{ inputs.dotnet-version }}
   go-indirect-tracing-workaround-diagnostic:
     name: 'Go: diagnostic when Go is changed after init step'
     permissions:

.github/workflows/__init-with-registries.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   init-with-registries:
     strategy:
@@ -32,23 +38,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: 'Packaging: Download using registries'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       packages: read
@@ -57,7 +52,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -78,7 +73,6 @@ jobs:
               token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Verify packages installed
-        shell: bash
         run: |
           PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
           CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
@@ -100,7 +94,6 @@ jobs:
           fi
 
       - name: Verify qlconfig.yml file was created
-        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
@@ -113,9 +106,6 @@ jobs:
           fi
 
       - name: Verify contents of qlconfig.yml
-    # yq is not available on windows
-        if: runner.os != 'Windows'
-        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'

.github/workflows/__javascript-source-root.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   javascript-source-root:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Custom source root
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,6 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Move codeql-action
-        shell: bash
         run: |
           mkdir ../new-source-root
           mv * ../new-source-root
@@ -66,7 +72,6 @@ jobs:
         with:
           skip-queries: true
       - name: Assert database exists
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d javascript ]]; then

.github/workflows/__job-run-uuid-sarif.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   job-run-uuid-sarif:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Job run UUID added to SARIF
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -57,13 +64,12 @@ jobs:
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)

.github/workflows/__language-aliases.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   language-aliases:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Language aliases
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__local-bundle.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,15 +44,32 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  test-local-codeql:
+  local-bundle:
     strategy:
       fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: nightly-latest
+            version: linked
     name: Local CodeQL bundle
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +77,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -59,16 +86,22 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
-      - name: Fetch a CodeQL bundle
-        shell: bash
-        env:
-          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - name: Fetch latest CodeQL bundle
         run: |
-          wget "$CODEQL_URL"
+          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
       - id: init
         uses: ./../action/init
         with:
@@ -76,7 +109,6 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ./codeql-bundle-linux64.tar.zst
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__multi-language-autodetect.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   multi-language-autodetect:
     strategy:
@@ -60,6 +86,10 @@ jobs:
             version: stable-v2.21.4
           - os: ubuntu-latest
             version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -73,6 +103,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Multi-language repository
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -80,7 +111,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -89,12 +120,20 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - name: Use Xcode 16
-        shell: bash
         if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
         run: sudo xcode-select -s "/Applications/Xcode_16.app"
 
@@ -107,7 +146,6 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - name: Build code
-        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze
@@ -116,7 +154,6 @@ jobs:
           upload-database: false
 
       - name: Check language autodetect for all languages excluding Swift
-        shell: bash
         run: |
           CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
           if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -156,7 +193,6 @@ jobs:
 
       - name: Check language autodetect for Swift on macOS
         if: runner.os == 'macOS'
-        shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
           if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -164,4 +200,5 @@ jobs:
             exit 1
           fi
     env:
+      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   overlay-init-fallback:
     strategy:
@@ -35,6 +41,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Overlay database init fallback
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -42,7 +49,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,7 +68,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases/actions"
           if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
@@ -42,23 +68,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,9 +81,9 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm
@@ -82,10 +97,19 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -93,7 +117,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -109,7 +132,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-inputs-js.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-inputs-js:
     strategy:
@@ -42,23 +58,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: 'Packaging: Config and input'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,9 +71,9 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm
@@ -82,10 +87,14 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -93,7 +102,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -109,7 +117,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-js.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-js:
     strategy:
@@ -42,23 +58,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: 'Packaging: Config file'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,9 +71,9 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm
@@ -82,17 +87,20 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging.yml
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -108,7 +116,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-inputs-js.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-inputs-js:
     strategy:
@@ -42,23 +58,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: 'Packaging: Action input'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,9 +71,9 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Install Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
           node-version: 20.x
           cache: npm
@@ -82,10 +87,14 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging2.yml
@@ -93,7 +102,6 @@ jobs:
           packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -108,7 +116,6 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__quality-queries.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   quality-queries:
     strategy:
@@ -32,17 +38,24 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
             version: linked
-          - os: windows-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
             version: linked
+            analysis-kinds: code-scanning,code-quality
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
             version: nightly-latest
-          - os: windows-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
             version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
     name: Quality queries input
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +63,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,33 +74,48 @@ jobs:
       - uses: ./../action/init
         with:
           languages: javascript
-          quality-queries: code-quality
+          analysis-kinds: ${{ matrix.analysis-kinds }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
+          post-processed-sarif-path: ${{ runner.temp }}/post-processed
       - name: Upload security SARIF
-        uses: actions/upload-artifact@v4
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/upload-artifact@v5
         with:
-          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Upload quality SARIF
-        uses: actions/upload-artifact@v4
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/upload-artifact@v5
         with:
-          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.quality.sarif.json
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
           path: ${{ runner.temp }}/results/javascript.quality.sarif
           retention-days: 7
+      - name: Upload post-processed SARIF
+        uses: actions/upload-artifact@v5
+        with:
+          name: |
+            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
+          path: ${{ runner.temp }}/post-processed
+          retention-days: 7
+          if-no-files-found: error
       - name: Check quality query does not appear in security SARIF
-        uses: actions/github-script@v7
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
           EXPECT_PRESENT: 'false'
         with:
           script: ${{ env.CHECK_SCRIPT }}
       - name: Check quality query appears in quality SARIF
-        uses: actions/github-script@v7
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/github-script@v8
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
           EXPECT_PRESENT: 'true'

.github/workflows/__remote-config.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   remote-config:
     strategy:
@@ -45,6 +71,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Remote config file
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -52,7 +79,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,10 +88,19 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -72,7 +108,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__resolve-environment-action.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   resolve-environment-action:
     strategy:
@@ -32,23 +38,12 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: Resolve environment
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -56,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__rubocop-multi-language.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rubocop-multi-language:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: RuboCop multi-language
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -49,17 +56,14 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@44511735964dcb71245e7e55f72539531f7bc0eb # v1.257.0
+        uses: ruby/setup-ruby@8aeb6ff8030dd539317f8e1769a044873b56ea71 # v1.268.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration
-        shell: bash
         run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
       - name: Install dependencies
-        shell: bash
         run: bundle install
       - name: RuboCop run
-        shell: bash
         run: |
           bash -c "
             bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif

.github/workflows/__ruby.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   ruby:
     strategy:
@@ -43,6 +49,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Ruby analysis
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -50,7 +57,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -67,7 +74,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
           if [[ ! -d "$RUBY_DB" ]]; then

.github/workflows/__rust.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rust:
     strategy:
@@ -41,6 +47,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Rust analysis
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -48,7 +55,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -65,7 +72,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
           if [[ ! -d "$RUST_DB" ]]; then

.github/workflows/__split-workflow.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   split-workflow:
     strategy:
@@ -53,6 +69,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Split workflow
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,7 +77,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -69,10 +86,14 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -80,7 +101,6 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -89,7 +109,6 @@ jobs:
           upload-database: false
 
       - name: Assert No Results
-        shell: bash
         run: |
           if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
             echo "Expected results directory to be empty after skipping query execution!"
@@ -100,7 +119,6 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Assert Results
-        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__start-proxy.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   start-proxy:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: windows-latest
             version: linked
     name: Start proxy
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -44,7 +51,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__submit-sarif-failure.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   submit-sarif-failure:
     strategy:
@@ -37,6 +43,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Submit SARIF after failure
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: write # needed to upload the SARIF file
@@ -45,7 +52,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -53,7 +60,7 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - uses: ./init
         with:
           languages: javascript

.github/workflows/__swift-autobuild.yml

@@ -24,6 +24,12 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-autobuild:
     strategy:
@@ -33,6 +39,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -40,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -55,7 +62,6 @@ jobs:
           build-mode: autobuild
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check working directory
-        shell: bash
         run: pwd
       - uses: ./../action/autobuild
         timeout-minutes: 30
@@ -64,7 +70,6 @@ jobs:
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__swift-custom-build.yml

@@ -27,6 +27,11 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +39,17 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-custom-build:
     strategy:
@@ -47,6 +63,7 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using a custom build command
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +71,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,12 +80,15 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - name: Use Xcode 16
-        shell: bash
         if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
         run: sudo xcode-select -s "/Applications/Xcode_16.app"
       - uses: ./../action/init
@@ -77,17 +97,14 @@ jobs:
           languages: swift
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check working directory
-        shell: bash
         run: pwd
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
-        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__unset-environment.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   unset-environment:
     strategy:
@@ -45,6 +71,7 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Test unsetting environment variables
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -52,7 +79,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,10 +88,19 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
@@ -73,14 +109,12 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
-        shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
-      - shell: bash
-        run: |
+      - run: |
           CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
           if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
             echo "::error::Did not create a database for CPP, or created it in the wrong location." \

.github/workflows/__upload-quality-sarif.yml

@@ -1,91 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Upload-sarif: code quality endpoint'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-jobs:
-  upload-quality-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
-    name: 'Upload-sarif: code quality endpoint'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v5
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v5
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-            github.sha }}
-          quality-queries: code-quality
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-  # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          upload: never
-      - uses: ./../action/upload-sarif
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   upload-ref-sha-input:
     strategy:
@@ -42,11 +68,8 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +77,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,10 +86,19 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -74,7 +106,6 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
-        shell: bash
         run: ./build.sh
   # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze

.github/workflows/__upload-sarif.yml

@@ -0,0 +1,187 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test different uses of `upload-sarif`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  upload-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning,code-quality
+    name: Test different uses of `upload-sarif`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v6
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: csharp,java,javascript,python
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+      - name: Build code
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+          output: ${{ runner.temp }}/results
+
+      - name: |
+          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+        uses: ./../action/upload-sarif
+        id: upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+      - name: Fail for missing output from `upload-sarif` step for `code-scanning`
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Fail for missing output from `upload-sarif` step for `code-quality`
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Upload single SARIF file for Code Scanning
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-scanning
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+      - name: Fail for missing output from `upload-single-sarif-code-scanning` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') &&
+          !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Upload single SARIF file for Code Quality
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-quality
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+      - name: Fail for missing output from `upload-single-sarif-code-quality` step
+        if: contains(matrix.analysis-kinds, 'code-quality') &&
+          !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Change SARIF file extension
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+      - name: Upload single non-`.sarif` file
+        uses: ./../action/upload-sarif
+        id: upload-single-non-sarif
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+      - name: Fail for missing output from `upload-single-non-sarif` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -27,6 +27,16 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
   workflow_call:
     inputs:
       go-version:
@@ -34,6 +44,22 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
+      python-version:
+        type: string
+        description: The version of Python to install
+        required: false
+        default: '3.13'
+      dotnet-version:
+        type: string
+        description: The version of .NET to install
+        required: false
+        default: 9.x
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   with-checkout-path:
     strategy:
@@ -42,11 +68,8 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
     name: Use a custom `checkout_path`
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -54,7 +77,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,12 +86,20 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v5
+        uses: actions/setup-go@v6
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
+      - name: Install Python
+        if: matrix.version != 'nightly-latest'
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ inputs.python-version || '3.13' }}
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - name: Delete original checkout
-        shell: bash
         run: |
           # delete the original checkout so we don't accidentally use it.
           # Actions does not support deleting the current working directory, so we
@@ -76,7 +107,7 @@ jobs:
           rm -rf ./* .github .git
   # Check out the actions repo again, but at a different location.
   # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
           path: x/y/z/some-path
@@ -89,7 +120,6 @@ jobs:
           source-root: x/y/z/some-path/tests/multi-language-repo
 
       - name: Build code
-        shell: bash
         working-directory: x/y/z/some-path/tests/multi-language-repo
         run: |
           ./build.sh
@@ -101,31 +131,31 @@ jobs:
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
       - name: Verify SARIF after upload
-        shell: bash
         run: |
+          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"
           EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
 
           if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
             echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
 
           if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
             echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
 
           if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
             echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$RUNNER_TEMP/payload.json"
+            echo "$PAYLOAD_FILE"
             exit 1
           fi
     env:

.github/workflows/check-expected-release-files.yml

@@ -9,16 +9,20 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   check-expected-release-files:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
 
     permissions:
       contents: read
 
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -4,7 +4,6 @@ on:
   push:
     branches: [main, releases/v*]
   pull_request:
-    branches: [main, releases/v*]
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
@@ -13,12 +12,17 @@ on:
     - cron: '30 1 * * 0'
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 env:
   CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
 jobs:
   # Identify the CodeQL tool versions to use in the analysis job.
   check-codeql-versions:
+    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
     outputs:
       versions: ${{ steps.compare.outputs.versions }}
@@ -27,7 +31,7 @@ jobs:
       contents: read
 
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - name: Init with default CodeQL bundle from the VM image
       id: init-default
       uses: ./init
@@ -71,11 +75,12 @@ jobs:
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
   analyze-javascript:
+    if: github.triggering_actor != 'dependabot[bot]'
     needs: [check-codeql-versions]
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-13,macos-14,macos-15]
+        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-14,macos-15]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
@@ -85,28 +90,36 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
     - name: Initialize CodeQL
       uses: ./init
       id: init
       with:
         languages: javascript
-        config-file: ./.github/codeql/codeql-config.yml
+        config-file: ./.github/codeql/codeql-config-javascript.yml
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: ${{steps.init.outputs.codeql-path}} version --format=json
+      run: >
+        "$CODEQL" version --format=json
+      env:
+        CODEQL: ${{steps.init.outputs.codeql-path}}
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
         category: "/language:javascript"
+        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && 'always') || 'never' }}
 
-
-  analyze-actions:
+  analyze-other:
+    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
 
     strategy:
       fail-fast: false
+      matrix:
+        include:
+          - language: actions
+          - language: python
 
     permissions:
       contents: read
@@ -114,13 +127,19 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
     - name: Initialize CodeQL
       uses: ./init
       with:
-        languages: actions
-        config-file: ./.github/codeql/codeql-actions-config.yml
+        languages: ${{ matrix.language }}
+        build-mode: none
+        config: >
+          paths-ignore:
+            - lib
+            - tests
+          queries:
+            - uses: security-and-quality
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
-        category: "/language:actions"
+        category: "/language:${{ matrix.language }}"

.github/workflows/codescanning-config-cli.yml

@@ -22,8 +22,13 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   code-scanning-config-tests:
+    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
     permissions:
@@ -37,16 +42,10 @@ jobs:
         include:
         - os: ubuntu-latest
           version: linked
-        - os: macos-latest
-          version: linked
         - os: ubuntu-latest
           version: default
-        - os: macos-latest
-          version: default
         - os: ubuntu-latest
           version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -54,12 +53,12 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
 
     - name: Set up Node.js
-      uses: actions/setup-node@v4
+      uses: actions/setup-node@v6
       with:
-        node-version: '20'
+        node-version: 24
         cache: 'npm'
 
     - name: Install dependencies
@@ -71,13 +70,33 @@ jobs:
       with:
         version: ${{ matrix.version }}
 
-    - name: Empty file
+    # On PRs, overlay analysis may change the config that is passed to the CLI.
+    # Therefore, we have two variants of the following test, one for PRs and one for other events.
+    - name: Empty file (non-PR)
+      if: github.event_name != 'pull_request'
       uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: "{}"
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
+    - name: Empty file (PR)
+      if: github.event_name == 'pull_request'
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "query-filters": [
+              {
+                "exclude": {
+                  "tags": "exclude-from-incremental"
+                }
+              }
+            ]
+          }
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
     - name: Packs from input
       if: success() || failure()
       uses: ./../action/.github/actions/check-codescanning-config
@@ -176,13 +195,13 @@ jobs:
       with:
         expected-config-file-contents: |
           {
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
-            ],
             "packs": {
               "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
-            }
+            },
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
+            ]
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql

.github/workflows/debug-artifacts-failure-safe.yml

@@ -17,8 +17,14 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
 jobs:
   upload-artifacts:
+    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -39,15 +45,19 @@ jobs:
       - name: Dump GitHub event
         run: cat "${GITHUB_EVENT_PATH}"
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v5
+      - uses: actions/setup-go@v6
         with:
           go-version: ^1.13.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: '9.x'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -55,7 +65,6 @@ jobs:
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
@@ -66,6 +75,7 @@ jobs:
           expect-error: true
   download-and-check-artifacts:
     name: Download and check debug artifacts after failure in analyze
+    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -73,9 +83,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
       - name: Check expected artifacts exist
-        shell: bash
         run: |
           LANGUAGES="cpp csharp go java javascript python"
           for version in $VERSIONS; do

.github/workflows/debug-artifacts-safe.yml

@@ -16,8 +16,14 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
 jobs:
   upload-artifacts:
+    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -35,15 +41,19 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v5
+      - uses: actions/setup-go@v6
         with:
           go-version: ^1.13.1
+      - name: Install .NET
+        uses: actions/setup-dotnet@v5
+        with:
+          dotnet-version: '9.x'
       - uses: ./../action/init
         id: init
         with:
@@ -54,12 +64,12 @@ jobs:
           # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
           languages: cpp,csharp,go,java,javascript,python,ruby
       - name: Build code
-        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
   download-and-check-artifacts:
     name: Download and check debug artifacts
+    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -67,9 +77,8 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
       - name: Check expected artifacts exist
-        shell: bash
         run: |
           VERSIONS="stable-v2.20.3 default linked nightly-latest"
           LANGUAGES="cpp csharp go java javascript python"

.github/workflows/label-pr-size.yml

@@ -0,0 +1,26 @@
+name: Label PR with size
+
+on:
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - edited
+      - ready_for_review
+
+permissions:
+  contents: read
+  pull-requests: write
+
+jobs:
+  sizeup:
+    name: Label PR with size
+    runs-on: ubuntu-slim
+
+    steps:
+      - name: Run sizeup
+        uses: lerebear/sizeup-action@b7beb3dd273e36039e16e48e7bc690c189e61951 # 0.8.12
+        with:
+          token: "${{ secrets.GITHUB_TOKEN }}"
+          configuration-file-path: ".github/sizeup.yml"

.github/workflows/post-release-mergeback.yml

@@ -18,9 +18,13 @@ on:
     branches:
       - releases/v*
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   merge-back:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
@@ -40,10 +44,13 @@ jobs:
           GITHUB_CONTEXT: '${{ toJson(github) }}'
         run: echo "${GITHUB_CONTEXT}"
 
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: '3.12'
 
       - name: Update git config
         run: |
@@ -135,13 +142,14 @@ jobs:
           token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Generate token
-        uses: actions/create-github-app-token@v2.1.1
+        uses: actions/create-github-app-token@v2.2.0
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}
           private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
 
       - name: Create the GitHub release
+        if: steps.check.outputs.exists != 'true'
         env:
           PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
           VERSION: "${{ steps.getVersion.outputs.version }}"

.github/workflows/pr-checks.yml

@@ -8,13 +8,19 @@ on:
     types: [opened, synchronize, reopened, ready_for_review]
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   unit-tests:
     name: Unit Tests
+    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
+        node-version: [20, 24]
     permissions:
       contents: read
       security-events: write # needed to upload ESLint results
@@ -22,16 +28,20 @@ jobs:
     timeout-minutes: 45
 
     steps:
-      - uses: actions/checkout@v5
+      - name: Prepare git (Windows)
+        if: runner.os == 'Windows'
+        run: git config --global core.autocrlf false
+
+      - uses: actions/checkout@v6
 
       - name: Set up Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v6
         with:
-          node-version: '20.x'
+          node-version: ${{ matrix.node-version }}
           cache: 'npm'
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: 3.11
 
@@ -46,24 +56,31 @@ jobs:
         run: .github/workflows/script/check-js.sh
 
       - name: Verify PR checks up to date
+        if: always()
         run: .github/workflows/script/verify-pr-checks.sh
 
       - name: Run unit tests
+        if: always()
         run: npm test
 
+      - name: Run pr-checks tests
+        if: always()
+        working-directory: pr-checks
+        run: python -m unittest discover
+
       - name: Lint
-        if: matrix.os != 'windows-latest'
+        if: always() && matrix.os != 'windows-latest'
         run: npm run lint-ci
 
       - name: Upload sarif
-        uses: github/codeql-action/upload-sarif@v3
-        if: matrix.os == 'ubuntu-latest'
+        uses: github/codeql-action/upload-sarif@v4
+        if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24
         with:
           sarif_file: eslint.sarif
           category: eslint
 
   check-node-version:
-    if: github.event.pull_request
+    if: github.event.pull_request && github.triggering_actor != 'dependabot[bot]'
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45
@@ -74,7 +91,7 @@ jobs:
       contents: read
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - id: head-version
         name: Verify all Actions use the same Node version
         run: |
@@ -89,7 +106,7 @@ jobs:
       - id: checkout-base
         name: 'Backport: Check out base ref'
         if: ${{ startsWith(github.head_ref, 'backport-') }}
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: ${{ env.BASE_REF }}
 

.github/workflows/prepare-release.yml

@@ -22,10 +22,14 @@ on:
     paths:
       - .github/workflows/prepare-release.yml
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   prepare:
     name: "Prepare release"
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.repository == 'github/codeql-action'
 
     permissions:
@@ -40,7 +44,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0 # Need full history for calculation of diffs
 

.github/workflows/publish-immutable-action.yml

@@ -1,35 +1,27 @@
 name: 'Publish Immutable Action Version'
 
 on:
-  release:
-    types: [published]
+  push:
+    tags:
+      # Match version tags, but not the major version tags.
+      - 'v[0-9]+.**'
+
+defaults:
+  run:
+    shell: bash
 
 jobs:
   publish:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     permissions:
       contents: read
       id-token: write
       packages: write
 
     steps:
-      - name: Check release name
-        id: check
-        env:
-          RELEASE_NAME: ${{ github.event.release.name }}
-        run: |
-          echo "Release name: ${{ github.event.release.name }}"
-          if [[ $RELEASE_NAME == v* ]]; then
-            echo "This is a CodeQL Action release. Create an Immutable Action"
-            echo "is-action-release=true" >> $GITHUB_OUTPUT
-          else
-            echo "This is a CodeQL Bundle release. Do not create an Immutable Action"
-            echo "is-action-release=false" >> $GITHUB_OUTPUT
-          fi
-      - name: Checking out
-        if: steps.check.outputs.is-action-release == 'true'
-        uses: actions/checkout@v5
-      - name: Publish
-        if: steps.check.outputs.is-action-release == 'true'
+      - name: Checkout repository
+        uses: actions/checkout@v6
+
+      - name: Publish immutable release
         id: publish
         uses: actions/publish-immutable-action@v0.0.4

.github/workflows/python312-windows.yml

@@ -12,8 +12,13 @@ on:
     - cron: '0 0 * * 1'
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   test-setup-python-scripts:
+    if: github.triggering_actor != 'dependabot[bot]'
     env:
       CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
@@ -22,11 +27,11 @@ jobs:
     runs-on: windows-latest
 
     steps:
-    - uses: actions/setup-python@v5
+    - uses: actions/setup-python@v6
       with:
         python-version: 3.12
 
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
 
     - name: Prepare test
       uses: ./.github/actions/prepare-test

.github/workflows/query-filters.yml

@@ -15,21 +15,26 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   query-filters:
     name: Query Filters Tests
+    if: github.triggering_actor != 'dependabot[bot]'
     timeout-minutes: 45
     runs-on: ubuntu-latest
     permissions:
       contents: read # This permission is needed to allow the GitHub Actions workflow to read the contents of the repository.
     steps:
     - name: Check out repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
 
     - name: Install Node.js
-      uses: actions/setup-node@v4
+      uses: actions/setup-node@v6
       with:
-        node-version: 20.x
+        node-version: 24
         cache: npm
 
     - name: Install dependencies

.github/workflows/rebuild.yml

@@ -5,21 +5,29 @@ on:
     types: [labeled]
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   rebuild:
     name: Rebuild Action
     runs-on: ubuntu-latest
     if: github.event.label.name == 'Rebuild' || github.event_name == 'workflow_dispatch'
 
+    env:
+      HEAD_REF: ${{ github.event.pull_request.head.ref || github.event.ref }}
+      BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
+
     permissions:
       contents: write # needed to push rebuilt commit
       pull-requests: write # needed to comment on the PR
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
-          ref: ${{ github.event.pull_request.head.ref || github.event.ref }}
+          ref: ${{ env.HEAD_REF }}
 
       - name: Remove label
         if: github.event_name == 'pull_request'
@@ -37,8 +45,6 @@ jobs:
 
       - name: Merge in changes from base branch
         id: merge
-        env:
-          BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
         run: |
           git fetch origin "$BASE_BRANCH"
 
@@ -68,13 +74,20 @@ jobs:
           npm run build
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: 3.11
 
-      - name: Generate workflows
+      - name: Sync back version updates to generated workflows
+        # Only sync back versions on Dependabot update PRs
+        if: startsWith(env.HEAD_REF, 'dependabot/')
+        working-directory: pr-checks
+        run: |
+          python3 sync_back.py -v
+
+      - name: Generate workflows
+        working-directory: pr-checks
         run: |
-          cd pr-checks
           python -m pip install --upgrade pip
           pip install ruamel.yaml==0.17.31
           python3 sync.py

.github/workflows/rollback-release.yml

@@ -10,10 +10,18 @@ on:
         required: true
   # Only for dry-runs of changes to the workflow.
   push:
+    # Don't run dry-run on release branches, to avoid an issue where the
+    # "new" tag determined by the "Prepare release" job already exists.
+    branches-ignore:
+      - releases/v*
     paths:
       - .github/workflows/rollback-release.yml
       - .github/actions/prepare-mergeback-branch/**
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   prepare:
     name: "Prepare release"
@@ -44,7 +52,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0 # Need full history for calculation of diffs
 
@@ -53,7 +61,6 @@ jobs:
 
       - name: Create tag for testing
         if: github.event_name != 'workflow_dispatch'
-        shell: bash
         run: git tag v0.0.0
 
       # We start by preparing the mergeback branch, mainly so that we have the updated changelog
@@ -96,7 +103,6 @@ jobs:
           echo "::endgroup::"
 
       - name: Create tags
-        shell: bash
         env:
           # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
           # but use `v0.0.0` for testing.
@@ -111,7 +117,6 @@ jobs:
       - name: Push tags
         # skip when testing
         if: github.event_name == 'workflow_dispatch'
-        shell: bash
         env:
           RELEASE_TAG: ${{ needs.prepare.outputs.version }}
           MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
@@ -132,7 +137,7 @@ jobs:
 
       - name: Generate token
         if: github.event_name == 'workflow_dispatch'
-        uses: actions/create-github-app-token@v2.1.1
+        uses: actions/create-github-app-token@v2.2.0
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}
@@ -160,7 +165,6 @@ jobs:
           echo "Created draft rollback release at $RELEASE_URL" >> $GITHUB_STEP_SUMMARY
 
       - name: Update changelog
-        shell: bash
         env:
           NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
           NEW_BRANCH: "${{ steps.mergeback-branch.outputs.new-branch }}"

.github/workflows/script/bundle_changelog.py

@@ -0,0 +1,18 @@
+import os
+import re
+
+# Get the PR number from the PR URL.
+pr_number = os.environ['PR_URL'].split('/')[-1]
+changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
+
+# If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
+with open('CHANGELOG.md', 'r') as f:
+    changelog = f.read()
+
+changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
+
+# Add the changelog note to the bottom of the "[UNRELEASED]" section.
+changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
+
+with open('CHANGELOG.md', 'w') as f:
+    f.write(changelog)

.github/workflows/script/check-js.sh

@@ -16,6 +16,18 @@ if [ ! -z "$(git status --porcelain)" ]; then
     # If we get a fail here then the PR needs attention
     >&2 echo "Failed: JavaScript files are not up to date. Run 'rm -rf lib && npm run-script build' to update"
     git status
+
+    echo "### Transpiled JS diff" >> $GITHUB_STEP_SUMMARY
+    echo "" >> $GITHUB_STEP_SUMMARY
+    echo '```diff' >> $GITHUB_STEP_SUMMARY
+    git diff --output="$RUNNER_TEMP/js.diff"
+    cat "$RUNNER_TEMP/js.diff" >> $GITHUB_STEP_SUMMARY
+    echo '```' >> $GITHUB_STEP_SUMMARY
+
+    # Reset bundled files to allow other checks to test for changes
+    git checkout lib
+
+    # Fail this check
     exit 1
 fi
 echo "Success: JavaScript files are up to date"

.github/workflows/script/update-required-checks.sh

@@ -1,6 +1,7 @@
 #!/usr/bin/env bash
 # Update the required checks based on the current branch.
-# Typically, this will be main.
+
+set -euo pipefail
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
 REPO_DIR="$(dirname "$SCRIPT_DIR")"
@@ -28,10 +29,16 @@ fi
 echo "Getting checks for $GITHUB_SHA"
 
 # Ignore any checks with "https://", CodeQL, LGTM, Update, and ESLint checks.
-CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") or . == "Agent" or . == "Cleanup artifacts" or . == "Prepare" or . == "Upload results" | not)] | unique | sort')"
 
 echo "$CHECKS" | jq
 
+# Fail if there are no checks
+if [ -z "$CHECKS" ] || [ "$(echo "$CHECKS" | jq '. | length')" -eq 0 ]; then
+  echo "No checks found for $GITHUB_SHA"
+  exit 1
+fi
+
 echo "{\"contexts\": ${CHECKS}}" > checks.json
 
 echo "Updating main"

.github/workflows/script/verify-pr-checks.sh

@@ -20,6 +20,14 @@ if [ ! -z "$(git status --porcelain)" ]; then
     git diff
     git status
     >&2 echo "Failed: PR checks are not up to date. Run 'cd pr-checks && python3 sync.py' to update"
+
+    echo "### Generated workflows diff" >> $GITHUB_STEP_SUMMARY
+    echo "" >> $GITHUB_STEP_SUMMARY
+    echo '```diff' >> $GITHUB_STEP_SUMMARY
+    git diff --output="$RUNNER_TEMP/workflows.diff"
+    cat "$RUNNER_TEMP/workflows.diff" >> $GITHUB_STEP_SUMMARY
+    echo '```' >> $GITHUB_STEP_SUMMARY
+
     exit 1
 fi
 echo "Success: PR checks are up to date"

.github/workflows/test-codeql-bundle-all.yml

@@ -16,6 +16,9 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
+defaults:
+  run:
+    shell: bash
 jobs:
   test-codeql-bundle-all:
     strategy:
@@ -25,6 +28,7 @@ jobs:
         - os: ubuntu-latest
           version: nightly-latest
     name: 'CodeQL Bundle All'
+    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -32,13 +36,17 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
         version: ${{ matrix.version }}
         use-all-platform-bundle: true
+    - name: Install .NET
+      uses: actions/setup-dotnet@v5
+      with:
+        dotnet-version: '9.x'
     - id: init
       uses: ./../action/init
       with:
@@ -46,7 +54,6 @@ jobs:
         languages: cpp,csharp,go,java,javascript,python,ruby
         tools: ${{ steps.prepare-test.outputs.tools-url }}
     - name: Build code
-      shell: bash
       run: ./build.sh
     - uses: ./../action/analyze
     env:

.github/workflows/update-bundle.yml

@@ -13,10 +13,14 @@ on:
     # to filter pre-release attribute.
     types: [published]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     permissions:
       contents: write # needed to push commits
       pull-requests: write # needed to create pull requests
@@ -29,17 +33,22 @@ jobs:
           GITHUB_CONTEXT: '${{ toJson(github) }}'
         run: echo "$GITHUB_CONTEXT"
 
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Update git config
         run: |
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
-      - name: Set up Node.js
-        uses: actions/setup-node@v4
+      - name: Set up Python
+        uses: actions/setup-python@v6
         with:
-          node-version: '20.x'
+          python-version: '3.12'
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v6
+        with:
+          node-version: 24
           cache: 'npm'
 
       - name: Install dependencies
@@ -74,28 +83,8 @@ jobs:
           echo "PR_URL=$pr_url" | tee -a "$GITHUB_ENV"
 
       - name: Create changelog note
-        shell: python
         run: |
-          import os
-          import re
-
-          # Get the PR number from the PR URL.
-          pr_number = os.environ['PR_URL'].split('/')[-1]
-          changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
-
-          # If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
-          # Use perl to avoid having to escape the newline character.
-
-          with open('CHANGELOG.md', 'r') as f:
-              changelog = f.read()
-
-          changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
-
-          # Add the changelog note to the bottom of the "[UNRELEASED]" section.
-          changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
-
-          with open('CHANGELOG.md', 'w') as f:
-              f.write(changelog)
+          python .github/workflows/script/bundle_changelog.py
 
       - name: Push changelog note
         run: |

.github/workflows/update-proxy-release.yml

@@ -1,101 +0,0 @@
-name: Update dependency proxy release assets
-on:
-  workflow_dispatch:
-    inputs:
-      tag:
-        description: "The tag of CodeQL Bundle release that contains the proxy binaries as release assets"
-        type: string
-        required: true
-
-jobs:
-  update:
-    name: Update code and create PR
-    timeout-minutes: 15
-    runs-on: ubuntu-latest
-    permissions:
-      contents: write # needed to push the updated files
-      pull-requests: write # needed to create the PR
-    env:
-      RELEASE_TAG: ${{ inputs.tag }}
-    steps:
-      - name: Check release tag format
-        id: checks
-        shell: bash
-        run: |
-          if ! [[ $RELEASE_TAG =~ ^codeql-bundle-v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
-            echo "Invalid release tag: expected a CodeQL bundle tag in the 'codeql-bundle-vM.N.P' format."
-            exit 1
-          fi
-
-          echo "target_branch=dependency-proxy/$RELEASE_TAG" >> $GITHUB_OUTPUT
-
-      - name: Check that the release exists
-        shell: bash
-        env:
-          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
-        run: |
-          (gh release view --repo "$GITHUB_REPOSITORY" --json "assets" "$RELEASE_TAG" && echo "Release found.") || exit 1
-
-      - name: Install Node
-        uses: actions/setup-node@v4
-
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: 0  # ensure we have all tags and can push commits
-          ref: main
-
-      - name: Update git config
-        shell: bash
-        run: |
-          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
-          git config --global user.name "github-actions[bot]"
-
-      - name: Update release tag and version
-        shell: bash
-        run: |
-          NOW=$(date +"%Y%m%d%H%M%S") # only used to make sure we don't fetch stale binaries from the toolcache
-          sed -i "s|https://github.com/github/codeql-action/releases/download/codeql-bundle-v[0-9.]\+/|https://github.com/github/codeql-action/releases/download/$RELEASE_TAG/|g" ./src/start-proxy-action.ts
-          sed -i "s/\"v2.0.[0-9]\+\"/\"v2.0.$NOW\"/g" ./src/start-proxy-action.ts
-
-      - name: Compile TypeScript and commit changes
-        shell: bash
-        env:
-          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
-        run: |
-          set -exu
-          git checkout -b "$TARGET_BRANCH"
-
-          npm run build
-          git add ./src/start-proxy-action.ts
-          git add ./lib
-          git commit -m "Update release used by \`start-proxy\` action"
-
-      - name: Push changes and open PR
-        shell: bash
-        env:
-          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
-          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
-          PR_FLAG: ${{ (github.event_name == 'workflow_dispatch' && '--draft') || '--dry-run' }}
-        run: |
-          set -exu
-          pr_title="Update release used by \`start-proxy\` to \`$RELEASE_TAG\`"
-          pr_body=$(cat << EOF
-            This PR updates the \`start-proxy\` action to use the private registry proxy binaries that
-            are attached as release assets to the \`$RELEASE_TAG\` release.
-
-
-            Please do the following before merging:
-
-            - [ ] Verify that the changes to the code are correct.
-            - [ ] Mark the PR as ready for review to trigger the CI.
-          EOF
-          )
-
-          git push origin "$TARGET_BRANCH"
-          gh pr create \
-            --head "$TARGET_BRANCH" \
-            --base "main" \
-            --title "${pr_title}" \
-            --body "${pr_body}" \
-            $PR_FLAG

.github/workflows/update-release-branch.yml

@@ -11,6 +11,10 @@ on:
     branches:
       - releases/*
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
 
   prepare:
@@ -22,7 +26,7 @@ jobs:
 
   update:
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.event_name == 'workflow_dispatch'
     needs: [prepare]
     env:
@@ -34,7 +38,7 @@ jobs:
       contents: write # needed to push commits
       pull-requests: write # needed to create pull request
     steps:
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         fetch-depth: 0  # Need full history for calculation of diffs
     - uses: ./.github/actions/release-initialise
@@ -73,7 +77,7 @@ jobs:
 
   backport:
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     environment: Automation
     needs: [prepare]
     if: ${{ (github.event_name == 'push') && needs.prepare.outputs.backport_target_branches != '[]' }}
@@ -89,14 +93,14 @@ jobs:
       pull-requests: write # needed to create pull request
     steps:
     - name: Generate token
-      uses: actions/create-github-app-token@v2.1.1
+      uses: actions/create-github-app-token@v2.2.0
       id: app-token
       with:
         app-id: ${{ vars.AUTOMATION_APP_ID }}
         private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
 
     - name: Checkout
-      uses: actions/checkout@v5
+      uses: actions/checkout@v6
       with:
         fetch-depth: 0  # Need full history for calculation of diffs
         token: ${{ steps.app-token.outputs.token }}

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -4,12 +4,18 @@ on:
   schedule:
     - cron: "0 0 * * *"
   workflow_dispatch:
+  pull_request:
+    branches:
+      - main
+    paths:
+      - .github/workflows/update-supported-enterprise-server-versions.yml
+      - .github/workflows/update-supported-enterprise-server-versions/update.py
 
 jobs:
   update-supported-enterprise-server-versions:
     name: Update Supported Enterprise Server Versions
     timeout-minutes: 45
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-slim
     if: github.repository == 'github/codeql-action'
     permissions:
       contents: write # needed to push commits
@@ -17,17 +23,18 @@ jobs:
 
     steps:
       - name: Setup Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: "3.13"
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Checkout Enterprise Releases
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           repository: github/enterprise-releases
           token: ${{ secrets.ENTERPRISE_RELEASE_TOKEN }}
           path: ${{ github.workspace }}/enterprise-releases/
+          sparse-checkout: releases.json
       - name: Update Supported Enterprise Server Versions
         run: |
           cd ./.github/workflows/update-supported-enterprise-server-versions/
@@ -35,6 +42,7 @@ jobs:
           pipenv install
           pipenv run ./update.py
           rm --recursive "$ENTERPRISE_RELEASES_PATH"
+          npm ci
           npm run build
         env:
           ENTERPRISE_RELEASES_PATH: ${{ github.workspace }}/enterprise-releases/
@@ -44,16 +52,25 @@ jobs:
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
-      - name: Commit changes and open PR
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Commit changes
+        id: prepare-commit
         run: |
           if [[ -z $(git status --porcelain) ]]; then
             echo "No changes to commit"
+            echo "committed=false" >> $GITHUB_OUTPUT
           else
             git checkout -b update-supported-enterprise-server-versions
             git add .
             git commit --message "Update supported GitHub Enterprise Server versions"
+
+            echo "committed=true" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Open PR
+        if: github.event_name != 'pull_request' && steps.prepare-commit.outputs.committed == 'true'
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
           git push origin update-supported-enterprise-server-versions
 
           body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
@@ -65,4 +82,3 @@ jobs:
           gh pr create --draft \
             --title "Update supported GitHub Enterprise Server versions" \
             --body "$body"
-          fi

.vscode/settings.json

@@ -8,6 +8,11 @@
     "build": true,
     "lib": true,
   },
+  "search.exclude": {
+    "**/node_modules": true,
+    "build": true,
+    "lib": true,
+  },
   // Installing a new Node package often triggers VS Code's git limit warnings as there is typically
   // an intermediate stage where many files are modified. This setting suppresses these warnings.
   "git.ignoreLimitWarning": true,

CHANGELOG.md

@@ -2,13 +2,88 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
-## [UNRELEASED]
+## 3.31.8 - 11 Dec 2025
+
+- Update default CodeQL bundle version to 2.23.8. [#3354](https://github.com/github/codeql-action/pull/3354)
+
+## 3.31.7 - 05 Dec 2025
+
+- Update default CodeQL bundle version to 2.23.7. [#3343](https://github.com/github/codeql-action/pull/3343)
+
+## 3.31.6 - 01 Dec 2025
 
 No user facing changes.
 
+## 3.31.5 - 24 Nov 2025
+
+- Update default CodeQL bundle version to 2.23.6. [#3321](https://github.com/github/codeql-action/pull/3321)
+
+## 3.31.4 - 18 Nov 2025
+
+No user facing changes.
+
+## 3.31.3 - 13 Nov 2025
+
+- CodeQL Action v3 will be deprecated in December 2026.  The Action now logs a warning for customers who are running v3 but could be running v4. For more information, see [Upcoming deprecation of CodeQL Action v3](https://github.blog/changelog/2025-10-28-upcoming-deprecation-of-codeql-action-v3/).
+- Update default CodeQL bundle version to 2.23.5. [#3288](https://github.com/github/codeql-action/pull/3288)
+
+## 3.31.2 - 30 Oct 2025
+
+No user facing changes.
+
+## 3.31.1 - 30 Oct 2025
+
+- The `add-snippets` input has been removed from the `analyze` action. This input has been deprecated since CodeQL Action 3.26.4 in August 2024 when this removal was announced.
+
+## 3.31.0 - 24 Oct 2025
+
+- Bump minimum CodeQL bundle version to 2.17.6. [#3223](https://github.com/github/codeql-action/pull/3223)
+- When SARIF files are uploaded by the `analyze` or `upload-sarif` actions, the CodeQL Action automatically performs post-processing steps to prepare the data for the upload. Previously, these post-processing steps were only performed before an upload took place. We are now changing this so that the post-processing steps will always be performed, even when the SARIF files are not uploaded. This does not change anything for the `upload-sarif` action. For `analyze`, this may affect Advanced Setup for CodeQL users who specify a value other than `always` for the `upload` input. [#3222](https://github.com/github/codeql-action/pull/3222)
+
+## 3.30.9 - 17 Oct 2025
+
+- Update default CodeQL bundle version to 2.23.3. [#3205](https://github.com/github/codeql-action/pull/3205)
+- Experimental: A new `setup-codeql` action has been added which is similar to `init`, except it only installs the CodeQL CLI and does not initialize a database. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#3204](https://github.com/github/codeql-action/pull/3204)
+
+## 3.30.8 - 10 Oct 2025
+
+No user facing changes.
+
+## 3.30.7 - 06 Oct 2025
+
+No user facing changes.
+
+## 3.30.6 - 02 Oct 2025
+
+- Update default CodeQL bundle version to 2.23.2. [#3168](https://github.com/github/codeql-action/pull/3168)
+
+## 3.30.5 - 26 Sep 2025
+
+- We fixed a bug that was introduced in `3.30.4` with `upload-sarif` which resulted in files without a `.sarif` extension not getting uploaded. [#3160](https://github.com/github/codeql-action/pull/3160)
+
+## 3.30.4 - 25 Sep 2025
+
+- We have improved the CodeQL Action's ability to validate that the workflow it is used in does not use different versions of the CodeQL Action for different workflow steps. Mixing different versions of the CodeQL Action in the same workflow is unsupported and can lead to unpredictable results. A warning will now be emitted from the `codeql-action/init` step if different versions of the CodeQL Action are detected in the workflow file. Additionally, an error will now be thrown by the other CodeQL Action steps if they load a configuration file that was generated by a different version of the `codeql-action/init` step. [#3099](https://github.com/github/codeql-action/pull/3099) and [#3100](https://github.com/github/codeql-action/pull/3100)
+- We added support for reducing the size of dependency caches for Java analyses, which will reduce cache usage and speed up workflows. This will be enabled automatically at a later time. [#3107](https://github.com/github/codeql-action/pull/3107)
+- You can now run the latest CodeQL nightly bundle by passing `tools: nightly` to the `init` action. In general, the nightly bundle is unstable and we only recommend running it when directed by GitHub staff. [#3130](https://github.com/github/codeql-action/pull/3130)
+- Update default CodeQL bundle version to 2.23.1. [#3118](https://github.com/github/codeql-action/pull/3118)
+
+## 3.30.3 - 10 Sep 2025
+
+No user facing changes.
+
+## 3.30.2 - 09 Sep 2025
+
+- Fixed a bug which could cause language autodetection to fail. [#3084](https://github.com/github/codeql-action/pull/3084)
+- Experimental: The `quality-queries` input that was added in `3.29.2` as part of an internal experiment is now deprecated and will be removed in an upcoming version of the CodeQL Action. It has been superseded by a new `analysis-kinds` input, which is part of the same internal experiment. Do not use this in production as it is subject to change at any time. [#3064](https://github.com/github/codeql-action/pull/3064)
+
+## 3.30.1 - 05 Sep 2025
+
+- Update default CodeQL bundle version to 2.23.0. [#3077](https://github.com/github/codeql-action/pull/3077)
+
 ## 3.30.0 - 01 Sep 2025
 
-No user facing changes.
+- Reduce the size of the CodeQL Action, speeding up workflows by approximately 4 seconds. [#3054](https://github.com/github/codeql-action/pull/3054)
 
 ## 3.29.11 - 21 Aug 2025
 
@@ -212,17 +287,13 @@ No user facing changes.
 ## 3.26.12 - 07 Oct 2024
 
 - _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.14.5 and earlier. These versions of CodeQL were discontinued on 24 September 2024 alongside GitHub Enterprise Server 3.10, and will be unsupported by CodeQL Action versions 3.27.0 and later and versions 2.27.0 and later. [#2520](https://github.com/github/codeql-action/pull/2520)
-
   - If you are using one of these versions, please update to CodeQL CLI version 2.14.6 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
-
   - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.13.5 and 2.14.5, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.26.11` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.26.11` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
 
 ## 3.26.11 - 03 Oct 2024
 
 - _Upcoming breaking change_: Add support for using `actions/download-artifact@v4` to programmatically consume CodeQL Action debug artifacts.
-
   Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
-
   This change is currently unavailable for GitHub Enterprise Server customers, as `actions/upload-artifact@v4` and `actions/download-artifact@v4` are not yet compatible with GHES.
 - Update default CodeQL bundle version to 2.19.1. [#2519](https://github.com/github/codeql-action/pull/2519)
 
@@ -345,12 +416,9 @@ No user facing changes.
 ## 3.25.0 - 15 Apr 2024
 
 - The deprecated feature for extracting dependencies for a Python analysis has been removed. [#2224](https://github.com/github/codeql-action/pull/2224)
-
   As a result, the following inputs and environment variables are now ignored:
-
   - The `setup-python-dependencies` input to the `init` Action
   - The `CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION` environment variable
-
   We recommend removing any references to these from your workflows. For more information, see the release notes for CodeQL Action v3.23.0 and v2.23.0.
 - Automatically overwrite an existing database if found on the filesystem. [#2229](https://github.com/github/codeql-action/pull/2229)
 - Bump the minimum CodeQL bundle version to 2.12.6. [#2232](https://github.com/github/codeql-action/pull/2232)

CONTRIBUTING.md

@@ -13,13 +13,14 @@ Please note that this project is released with a [Contributor Code of Conduct][c
 
 ## Development and Testing
 
-Before you start, ensure that you have a recent version of node (16 or higher) installed, along with a recent version of npm (9.2 or higher). You can see which version of node is used by the action in `init/action.yml`.
+Before you start, ensure that you have a recent version of node (24 or higher) installed, along with a recent version of npm (9.2 or higher). You can see which version of node is used by the action in `init/action.yml`.
 
 ### Common tasks
 
 * Transpile the TypeScript to JavaScript: `npm run build`.  Note that the JavaScript files are committed to git.
 * Run tests: `npm run test`.  You’ll need to ensure that the JavaScript files are up-to-date first by running the command above.
 * Run the linter: `npm run lint`.
+* Run tests for a specific path: `npm run ava -- ./src/filename.test.ts` or `npm run ava -- ./src/feature-flags/`
 
 This project also includes configuration to run tests from VSCode (with support for breakpoints) - open the test file you wish to run and choose "Debug AVA test file" from the Run menu in the Run panel.
 
@@ -68,11 +69,12 @@ Once the mergeback and backport pull request have been merged, the release is co
 
 ## Keeping the PR checks up to date (admin access required)
 
-Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred jobs that need to pass in order for a PR to turn green. You can regenerate the checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
+Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred required jobs that need to pass in order for a PR to turn green. It would be too tedious to maintain that list manually. You can regenerate the set of required checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
 
-1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
-2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
-3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
+- If you run the script without an argument, it will retrieve the set of workflows that ran for the latest commit on `main`. Make sure that your local `main` branch is up to date before running the script.
+- You can specify a commit SHA as argument to retrieve the set of workflows for that commit instead. You will likely want to use this if you have a PR that removes or adds PR checks.
+
+After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
 
 Note that any updates to checks on `main` need to be backported to all currently supported major version branches, in order to maintain the same set of names for required checks.
 

README.md

@@ -34,6 +34,7 @@ Actions with special purposes and unlikely to be used directly:
 - `autobuild`: Attempts to automatically build the code. Only used for analyzing languages that require a build. Use the `build-mode: autobuild` input in the `init` action instead. For information about input parameters, see the [autobuild action definition](https://github.com/github/codeql-action/blob/main/autobuild/action.yml).
 - `resolve-environment`: [Experimental] Attempts to infer a build environment suitable for automatic builds. For information about input parameters, see the [resolve-environment action definition](https://github.com/github/codeql-action/blob/main/resolve-environment/action.yml).
 - `start-proxy`: [Experimental] Start the HTTP proxy server. Internal use only and will change without notice. For information about input parameters, see the [start-proxy action definition](https://github.com/github/codeql-action/blob/main/start-proxy/action.yml).
+- `setup-codeql`: [Experimental] Similar to `init`, except it only installs the CodeQL CLI and does not initialize a database.
 
 ### Workflow Permissions
 
@@ -62,7 +63,8 @@ For compiled languages:
 
 The following versions of the CodeQL Action are currently supported:
 
-- v3 (latest)
+- v4 (latest)
+- v3
 
 ## Supported versions of the CodeQL Bundle on GitHub Enterprise Server
 

analyze/action.yml

@@ -6,7 +6,7 @@ inputs:
     description: The name of the check run to add text to.
     required: false
   output:
-    description: The path of the directory in which to save the SARIF results
+    description: The path of the directory in which to save the SARIF results from the CodeQL CLI.
     required: false
     default: "../results"
   upload:
@@ -32,14 +32,10 @@ inputs:
       and 13GB for macOS).
     required: false
   add-snippets:
-    description: Specify whether or not to add code snippets to the output sarif file.
+    description: Does not have any effect.
     required: false
-    default: "false"
     deprecationMessage: >-
-      The input "add-snippets" is deprecated and will be removed on the first release in August 2025.
-      When this input is set to true it is expected to add code snippets with an alert to the SARIF file.
-      However, since Code Scanning ignores code snippets provided as part of a SARIF file this is currently
-      a no operation. No alternative is available.
+      The input "add-snippets" has been removed and no longer has any effect.
   skip-queries:
     description: If this option is set, the CodeQL database will be built but no queries will be run on it. Thus, no results will be produced.
     required: false
@@ -58,7 +54,7 @@ inputs:
     # If changing this, make sure to update workflow.ts accordingly.
     default: ${{ github.workspace }}
   ref:
-    description: "The ref where results will be uploaded. If not provided, the Action will use the GITHUB_REF environment variable. If provided, the sha input must be provided as well. This input is ignored for pull requests from forks."
+    description: "The ref where results will be uploaded. If not provided, the Action will use the GITHUB_REF environment variable. If provided, the sha input must be provided as well. This input is ignored for pull requests from forks. Expected format: refs/heads/<branch name>, refs/tags/<tag>, refs/pull/<number>/merge, or refs/pull/<number>/head."
     required: false
   sha:
     description: "The sha of the HEAD of the ref where results will be uploaded. If not provided, the Action will use the GITHUB_SHA environment variable. If provided, the ref input must be provided as well. This input is ignored for pull requests from forks."
@@ -70,6 +66,12 @@ inputs:
     description: Whether to upload the resulting CodeQL database
     required: false
     default: "true"
+  post-processed-sarif-path:
+    description: >-
+      Before uploading the SARIF files produced by the CodeQL CLI, the CodeQL Action may perform some post-processing
+      on them. Ordinarily, these post-processed SARIF files are not saved to disk. However, if a path is provided as an
+      argument for this input, they are written to the specified directory.
+    required: false
   wait-for-processing:
     description: If true, the Action will wait for the uploaded SARIF to be processed before completing.
     required: true

eslint.config.mjs

@@ -12,6 +12,7 @@ import filenames from "eslint-plugin-filenames";
 import github from "eslint-plugin-github";
 import _import from "eslint-plugin-import";
 import noAsyncForeach from "eslint-plugin-no-async-foreach";
+import jsdoc from "eslint-plugin-jsdoc";
 import globals from "globals";
 
 const __filename = fileURLToPath(import.meta.url);
@@ -52,6 +53,7 @@ export default [
       github: fixupPluginRules(github),
       import: fixupPluginRules(_import),
       "no-async-foreach": noAsyncForeach,
+      "jsdoc": jsdoc,
     },
 
     languageOptions: {
@@ -131,7 +133,18 @@ export default [
       "no-sequences": "error",
       "no-shadow": "off",
       "@typescript-eslint/no-shadow": "error",
+      "@typescript-eslint/prefer-optional-chain": "error",
       "one-var": ["error", "never"],
+
+      // Check param names to ensure that we don't have outdated JSDocs.
+      "jsdoc/check-param-names": [
+        "error",
+        {
+          // We don't currently require full JSDoc coverage, so this rule
+          // should not error on missing @param annotations.
+          disableMissingParamChecks: true,
+        }
+      ],
     },
   },
   {
@@ -146,6 +159,12 @@ export default [
       "@typescript-eslint/prefer-regexp-exec": "off",
       "@typescript-eslint/require-await": "off",
       "@typescript-eslint/restrict-template-expressions": "off",
+      "@typescript-eslint/no-unused-vars": [
+        "error",
+        {
+          "argsIgnorePattern": "^_",
+        }
+      ],
       "func-style": "off",
     },
   },

init/action.yml

@@ -12,6 +12,9 @@ inputs:
       - The URL of a CodeQL Bundle tarball GitHub release asset, or
       - A special value `linked` which uses the version of the CodeQL tools
         that the Action has been bundled with.
+      - A special value `nightly` which uses the latest nightly version of the
+        CodeQL tools. Note that this is unstable and not recommended for
+        production use.
 
       If not specified, the Action will check in several places until it finds
       the CodeQL tools.

justfile

@@ -22,7 +22,7 @@ test: build
 
 # Run the tests for a single file
 test_file filename: build
-    npx ava --verbose {{filename}}
+    npm run ava {{filename}}
 
 [doc("Refresh the .js build artefacts in the lib directory")]
 [confirm]