add rate limit exhaustion as configuration error

.github/actions/check-codescanning-config/index.ts

@@ -6,16 +6,6 @@ import * as assert from 'assert'
 
 const actualConfig = loadActualConfig()
 
-function sortConfigArrays(config) {
-  for (const key of Object.keys(config)) {
-    const value = config[key];
-    if (key === 'queries' && Array.isArray(value)) {
-      config[key] = value.sort();
-    }
-  }
-  return config;
-}
-
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
   core.setFailed('No expected configuration provided')
@@ -28,8 +18,8 @@ if (!rawExpectedConfig) {
 const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
 
 assert.deepStrictEqual(
-  sortConfigArrays(actualConfig),
+  actualConfig,
-  sortConfigArrays(expectedConfig),
+  expectedConfig,
   'Expected configuration does not match actual configuration'
 );
 

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node24
+  using: node20
   main: index.js

.github/actions/prepare-mergeback-branch/action.yml

@@ -1,80 +0,0 @@
-name: "Prepare mergeback branch"
-description: Prepares a mergeback branch and opens a PR for it
-inputs:
-  base:
-    description: "The name of the base branch"
-    required: true
-  head:
-    description: "The name of the head branch"
-    required: true
-  branch:
-    description: "The name of the branch to create."
-    required: true
-  version:
-    description: "The new version"
-    required: true
-  token:
-    description: "The token to use"
-    required: true
-  dry-run:
-    description: "Set to true to skip creating the PR. The branch will still be pushed."
-    default: "false"
-runs:
-  using: composite
-  steps:
-    - name: Create mergeback branch
-      shell: bash
-      env:
-        VERSION: "${{ inputs.version }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-      run: |
-        set -exu
-
-        # Ensure we are on the new branch
-        git checkout "${NEW_BRANCH}"
-
-        # Update the version number ready for the next release
-        npm version patch --no-git-tag-version
-
-        # Update the changelog, adding a new version heading directly above the most recent existing one
-        awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
-        git add .
-        git commit -m "Update changelog and version after ${VERSION}"
-
-        git push origin "${NEW_BRANCH}"
-
-    - name: Create PR
-      shell: bash
-      if: inputs.dry-run != 'true'
-      env:
-        VERSION: "${{ inputs.version }}"
-        BASE_BRANCH: "${{ inputs.base }}"
-        HEAD_BRANCH: "${{ inputs.head }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-        GITHUB_TOKEN: "${{ inputs.token }}"
-      run: |
-        set -exu
-        pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
-        pr_body=$(cat << EOF
-          This PR bumps the version number and updates the changelog after the ${VERSION} release.
-
-          Please do the following:
-
-          - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.
-          - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.
-          - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
-          - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
-                selected rather than "Squash and merge" or "Rebase and merge".
-        EOF
-        )
-
-        # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
-        # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
-        gh pr create \
-          --head "${NEW_BRANCH}" \
-          --base "${BASE_BRANCH}" \
-          --title "${pr_title}" \
-          --label "Rebuild" \
-          --body "${pr_body}" \
-          --assignee "${GITHUB_ACTOR}" \
-          --draft

.github/actions/prepare-test/action.yml

@@ -2,7 +2,7 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
@@ -29,44 +29,44 @@ runs:
     - id: get-url
       name: Determine URL
       shell: bash
-      env:
-        VERSION: ${{ inputs.version }}
-        USE_ALL_PLATFORM_BUNDLE: ${{ inputs.use-all-platform-bundle }}
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
+        if [[ ${{ inputs.version }} == "linked" ]]; then
-          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "linked" ]]; then
           echo "tools-url=linked" >> "$GITHUB_OUTPUT"
           exit 0
-        elif [[ "$VERSION" == "toolcache" ]]; then
+        elif [[ ${{ inputs.version }} == "default" ]]; then
-          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "default" ]]; then
           echo "tools-url=" >> "$GITHUB_OUTPUT"
           exit 0
         fi
 
-        if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
+        if [[ ${{ inputs.version }} == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
-          artifact_name="codeql-bundle.tar.gz"
+          extension="tar.zst"
+        else
+          extension="tar.gz"
+        fi
+
+        if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
+          artifact_name="codeql-bundle.$extension"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
-          artifact_name="codeql-bundle-linux64.tar.gz"
+          artifact_name="codeql-bundle-linux64.$extension"
         elif [[ "$RUNNER_OS" == "macOS" ]]; then
-          artifact_name="codeql-bundle-osx64.tar.gz"
+          artifact_name="codeql-bundle-osx64.$extension"
         elif [[ "$RUNNER_OS" == "Windows" ]]; then
-          artifact_name="codeql-bundle-win64.tar.gz"
+          artifact_name="codeql-bundle-win64.$extension"
         else
           echo "::error::Unrecognized OS $RUNNER_OS"
           exit 1
         fi
 
-        if [[ "$VERSION" == *"nightly"* ]]; then
+        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+          tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ "$VERSION" == *"stable"* ]]; then
+        elif [[ ${{ inputs.version }} == *"stable"* ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"

.github/actions/release-branches/action.yml

@@ -18,11 +18,8 @@ runs:
   using: "composite"
   steps:
     - id: branches
-      env:
-        MAJOR_VERSION: ${{ inputs.major_version }}
-        LATEST_TAG: ${{ inputs.latest_tag }}
       run: |
         python ${{ github.action_path }}/release-branches.py \
-            --major-version "$MAJOR_VERSION" \
+            --major-version ${{ inputs.major_version }} \
-            --latest-tag "$LATEST_TAG"
+            --latest-tag ${{ inputs.latest_tag }}
       shell: bash

.github/actions/release-initialise/action.yml

@@ -16,9 +16,9 @@ runs:
       shell: bash
 
     - name: Set up Python
-      uses: actions/setup-python@v6
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.12'
+        python-version: 3.12
 
     - name: Install dependencies
       run: |

.github/actions/setup-swift/action.yml

@@ -0,0 +1,39 @@
+name: "Set up Swift on Linux"
+description: Sets up an appropriate Swift version on Linux.
+inputs:
+  codeql-path:
+    description: Path to the CodeQL CLI executable.
+    required: true
+runs:
+  using: "composite"
+  steps:
+    - name: Get Swift version
+      id: get_swift_version
+      if: runner.os == 'Linux'
+      shell: bash
+      env:
+        CODEQL_PATH: ${{ inputs.codeql-path }}
+      run: |
+        SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
+        if [ $SWIFT_EXTRACTOR_DIR = "null" ]; then
+          VERSION="null"
+        else
+          VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version.
+          if [ $VERSION = "5.7" ]; then
+            VERSION="5.7.0"
+          elif [ $VERSION = "5.8" ]; then
+            VERSION="5.8.0"
+          elif [ $VERSION = "5.9" ]; then
+            VERSION="5.9.0"
+          # setup-swift does not yet support v5.9.1 Remove this when it does.
+          elif [ $VERSION = "5.9.1" ]; then
+            VERSION="5.9.0"
+          fi
+        fi
+        echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
+
+    - uses: redsun82/setup-swift@362f49f31da2f5f4f851657046bdd1290d03edc8 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+      if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
+      with:
+        swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/codeql/codeql-actions-config.yml

@@ -0,0 +1,4 @@
+# Configuration for the CodeQL Actions Queries
+name: "CodeQL Actions Queries config"
+queries:
+  - uses: security-and-quality

.github/codeql/codeql-config-javascript.yml

@@ -1,15 +0,0 @@
-name: "CodeQL config"
-queries: 
-  - name: Run custom queries
-    uses: ./queries
-  # Run all extra query suites, both because we want to
-  # and because it'll act as extra testing. This is why
-  # we include both even though one is a superset of the
-  # other, because we're testing the parsing logic and
-  # that the suites exist in the codeql bundle.
-  - uses: security-and-quality
-  - uses: security-experimental
-  - uses: security-extended
-paths-ignore:
-  - lib
-  - tests

.github/codeql/codeql-config.yml

@@ -0,0 +1,15 @@
+name: "CodeQL config"
+queries: 
+  - name: Run custom queries
+    uses: ./queries
+  # Run all extra query suites, both because we want to
+  # and because it'll act as extra testing. This is why
+  # we include both even though one is a superset of the
+  # other, because we're testing the parsing logic and
+  # that the suites exist in the codeql bundle.
+  - uses: security-experimental
+  - uses: security-extended
+  - uses: security-and-quality
+paths-ignore:
+  - tests
+  - lib

.github/copilot-instructions.md

@@ -1,21 +0,0 @@
-# CodeQL Action - Copilot Instructions
-
-## Generated code
-
-The CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from.
-
-GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that start with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.
-
-## Release process
-
-- A release-PR is a PR which matches all of the following patterns:
-  - PR title starts with the exact prefix: `Merge main into releases/v`
-    - Equivalent regex: `^Merge main into releases\/v`
-  - AND head (source) branch matches the update-branch pattern:
-    - Regex: `^update-v[0-9]+(?:\.[0-9]+)*(?:-[a-f0-9]+)?` (e.g. `update-v3.29.9-cc722e476`)
-  - AND base (target) branch matches a release branch:
-    - Regex: `^releases\/v` (e.g. `releases/v3`)
-
-- Consider all files in release-PRs to have already been reviewed and do not review them, except for the following two files:
-    - `CHANGELOG.md`
-    - `package.json`

.github/dependabot.yml

@@ -2,38 +2,45 @@ version: 2
 updates:
   - package-ecosystem: npm
     directory: "/"
+    reviewers:
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     labels:
-      - Rebuild
+      - Update dependencies
     # Ignore incompatible dependency updates
     ignore:
       # There is a type incompatibility issue between v0.0.9 and our other dependencies.
       - dependency-name: "@octokit/plugin-retry"
         versions: ["~6.0.0"]
+      # v7 requires ESM
+      - dependency-name: "del"
+        versions: ["^7.0.0"]
       # This is broken due to the way configuration files have changed. 
       # This might be fixed when we move to eslint v9.
       - dependency-name: "eslint-plugin-import"
         versions: [">=2.30.0"]
     groups:
-      npm-minor:
+      npm:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"
   - package-ecosystem: github-actions
-    directories:
+    directory: "/"
-      - "/.github/workflows"
+    reviewers:
-      - "/.github/actions"
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
-    labels:
-      - Rebuild
     groups:
-      actions-minor:
+      actions:
+        patterns:
+          - "*"
+  - package-ecosystem: github-actions
+    directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
+    reviewers:
+      - "github/codeql-production-shield"
+    schedule:
+      interval: weekly
+    groups:
+      actions-setup-swift:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"

.github/pull_request_template.md

@@ -1,81 +1,5 @@
-<!--
-    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
-                      If necessary, link to this PR from an internal issue and include further details there.
-
-    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
-              chose the approach you did if applicable. Indicate any open questions you want to answer
-              during the review process and anything you want reviewers to pay particular attention to.
-
-    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
--->
-
-### Risk assessment
-
-For internal use only. Please select the risk level of this change:
-
-- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
-- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
-
-#### Which use cases does this change impact?
-
-<!-- Delete options that don't apply. If in doubt, do not delete an option. -->
-
-Workflow types:
-
-- **Advanced setup** - Impacts users who have custom CodeQL workflows.
-- **Managed** - Impacts users with `dynamic` workflows (Default Setup, CCR, ...).
-
-Products:
-
-- **Code Scanning** - The changes impact analyses when `analysis-kinds: code-scanning`.
-- **Code Quality** - The changes impact analyses when `analysis-kinds: code-quality`.
-- **CCR** - The changes impact analyses for Copilot Code Reviews.
-- **Third-party analyses** - The changes affect the `upload-sarif` action.
-
-Environments:
-
-- **Dotcom** - Impacts CodeQL workflows on `github.com`.
-- **GHES** - Impacts CodeQL workflows on GitHub Enterprise Server.
-- **Testing/None** - This change does not impact any CodeQL workflows in production.
-
-#### How did/will you validate this change?
-
-<!-- Delete options that don't apply. -->
-
-- **Test repository** - This change will be tested on a test repository before merging.
-- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
-- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
-- **Other** - Please provide details.
-- **None** - I am not validating these changes.
-
-#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
-
-<!-- Delete strategies that don't apply. -->
-
-- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
-- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
-- **Other** - Please provide details.
-
-#### How will you know if something goes wrong after this change is released?
-
-<!-- Delete options that don't apply. -->
-
-- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
-    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
-    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
-- **Other** - Please provide details.
-
-#### Are there any special considerations for merging or releasing this change?
-
-<!--
-    Consider whether this change depends on a different change in another repository that should be released first.
--->
-
-- **No special considerations** - This change can be merged at any time.
-- **Special considerations** - This change should only be merged once certain preconditions are met. Please provide details of those or link to this PR from an internal issue.
-
 ### Merge / deployment checklist
 
-- Confirm this change is backwards compatible with existing workflows.
+- [ ] Confirm this change is backwards compatible with existing workflows.
-- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
+- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
-- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.
+- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.

.github/sizeup.yml

@@ -1,55 +0,0 @@
-labeling:
-  applyCategoryLabels: true
-  categoryLabelPrefix: "size/"
-
-commenting:
-  addCommentWhenScoreThresholdHasBeenExceeded: false
-
-sizeup:
-  categories:
-    - name: extra small
-      lte: 25
-      label:
-        name: XS
-        description: Should be very easy to review
-        color: 3cbf00
-    - name: small
-      lte: 100
-      label:
-        name: S
-        description: Should be easy to review
-        color: 5d9801
-    - name: medium
-      lte: 250
-      label:
-        name: M
-        description: Should be of average difficulty to review
-        color: 7f7203
-    - name: large
-      lte: 500
-      label:
-        name: L
-        description: May be hard to review
-        color: a14c05
-    - name: extra large
-      lte: 1000
-      label:
-        name: XL
-        description: May be very hard to review
-        color: c32607
-    - name: extra extra large
-      label:
-        name: XXL
-        description: May be extremely hard to review
-        color: e50009
-  ignoredFilePatterns:
-    - ".github/workflows/__*"
-    - "lib/**/*"
-    - "package-lock.json"
-  testFilePatterns:
-    - "**/*.test.ts"
-  scoring:
-    # This formula and the aliases below it are written in prefix notation.
-    # For an explanation of how this works, please see:
-    # https://github.com/lerebear/sizeup-core/blob/main/README.md#prefix-notation
-    formula: "- - + additions deletions comments whitespace"

.github/update-release-branch.py

@@ -97,8 +97,8 @@ def open_pr(
   body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
   if not is_primary_release:
-    body.append(' - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
-    body.append(' - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.')
+    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
 
   body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
   body.append(' - [ ] Approve and merge this PR. Make sure `Create a merge commit` is selected rather than `Squash and merge` or `Rebase and merge`.')
@@ -108,7 +108,7 @@ def open_pr(
     body.append(' - [ ] Merge all backport PRs to older release branches, that will automatically be created once this PR is merged.')
 
   title = f'Merge {source_branch} into {target_branch}'
-  labels = ['Rebuild'] if not is_primary_release else []
+  labels = ['Update dependencies'] if not is_primary_release else []
 
   # Create the pull request
   # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
@@ -371,10 +371,10 @@ def main():
       # releases.
       run_git('revert', vOlder_update_commits[0], '--no-edit')
 
-      # Also revert the "Rebuild" commit created by Actions.
+      # Also revert the "Update checked-in dependencies" commit created by Actions.
-      rebuild_commit = run_git('log', '--grep', '^Rebuild$', '--format=%H').split()[0]
+      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
-      print(f'  Reverting {rebuild_commit}')
+      print(f'  Reverting {update_dependencies_commit}')
-      run_git('revert', rebuild_commit, '--no-edit')
+      run_git('revert', update_dependencies_commit, '--no-edit')
 
     else:
       print('  Nothing to revert.')
@@ -389,7 +389,7 @@ def main():
 
     # Migrate the package version number from a vLatest version number to a vOlder version number
     print(f'Setting version number to {version} in package.json')
-    replace_version_package_json(get_current_version(), version) # We rely on the `Rebuild` workflow to update package-lock.json
+    replace_version_package_json(get_current_version(), version) # We rely on the `Update dependencies` workflow to update package-lock.json
     run_git('add', 'package.json')
 
     # Migrate the changelog notes from vLatest version numbers to vOlder version numbers

.github/workflows/__all-platform-bundle.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - All-platform bundle
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   all-platform-bundle:
     strategy:
@@ -58,12 +29,7 @@ jobs:
         include:
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: All-platform bundle
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -79,15 +45,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'true'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - id: init
         uses: ./../action/init
         with:
@@ -95,6 +52,7 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__analyze-ref-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   analyze-ref-input:
     strategy:
@@ -68,8 +29,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -77,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -85,20 +49,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -106,6 +56,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:

.github/workflows/__autobuild-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - autobuild-action
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-action:
     strategy:
@@ -53,7 +34,6 @@ jobs:
           - os: windows-latest
             version: linked
     name: autobuild-action
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -61,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -69,10 +49,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           languages: csharp
@@ -88,6 +64,7 @@ jobs:
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
       - name: Check database
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d csharp ]]; then

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Autobuild direct tracing (custom working directory)
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-direct-tracing-with-working-dir:
     strategy:
@@ -55,7 +36,6 @@ jobs:
           - os: windows-latest
             version: nightly-latest
     name: Autobuild direct tracing (custom working directory)
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -63,7 +43,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -71,12 +51,8 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Java
-        uses: actions/setup-java@v5
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
       - name: Test setup
+        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -88,6 +64,7 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check that indirect tracing is disabled
+        shell: bash
         run: |
           if [[ ! -z "${CODEQL_RUNNER}" ]]; then
             echo "Expected indirect tracing to be disabled, but the" \

.github/workflows/__autobuild-direct-tracing.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        shell: bash
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -1,80 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild working directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  autobuild-working-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Autobuild working directory
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          # Make sure that Gradle build succeeds in autobuild-dir ...
-          cp -a ../action/tests/java-repo autobuild-dir
-          # ... and fails if attempted in the current directory
-          echo > build.gradle
-      - uses: ./../action/init
-        with:
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-      - uses: ./../action/analyze
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d java ]]; then
-            echo "Did not find a Java database"
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode autobuild
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-autobuild:
     strategy:
@@ -47,15 +28,8 @@ jobs:
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
             version: nightly-latest
     name: Build mode autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -63,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -71,11 +45,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Java
-        uses: actions/setup-java@v5
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/
@@ -90,11 +59,6 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-      - name: Install yq
-        if: runner.os == 'Windows'
-        run: |
-          choco install yq -y
-
       - name: Validate database build mode
         run: |
           metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
@@ -104,14 +68,6 @@ jobs:
             exit 1
           fi
 
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-
       - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode manual
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-manual:
     strategy:
@@ -59,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode manual
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -67,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -75,15 +45,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
@@ -102,6 +63,7 @@ jobs:
           fi
 
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze

.github/workflows/__build-mode-none.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode none
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-none:
     strategy:
@@ -41,7 +32,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode none
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -49,7 +39,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__build-mode-rollback.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode rollback
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-rollback:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode rollback
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__bundle-from-toolcache.yml

@@ -1,85 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From toolcache'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  bundle-from-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: toolcache
-    name: 'Bundle: From toolcache'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache
-      - name: Check toolcache contains CodeQL
-        continue-on-error: true
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length === 0) {
-              throw new Error(`CodeQL could not be found in the toolcache`);
-            }
-      - id: setup-codeql
-        uses: ./../action/setup-codeql
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -1,105 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: Caching checks'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  bundle-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: 'Bundle: Caching checks'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            fs.rmdirSync(codeqlPath, { recursive: true });
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache
-      - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length !== 0) {
-              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
-            }
-            console.log('No versions of CodeQL found in the toolcache');
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-            if (allCodeqlVersions.length > 1) {
-              throw new Error('Multiple CodeQL versions found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -1,122 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: Zstandard checks'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  bundle-zstd:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: 'Bundle: Zstandard checks'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v5
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
-
-            if (!toolsUrl.endsWith(expectedExtension)) {
-              core.setFailed(
-                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Clean up database cluster directory
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cleanup-db-cluster-dir:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Clean up database cluster directory
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__config-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Config export
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-export:
     strategy:
@@ -38,10 +29,17 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Config export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -49,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -67,13 +65,13 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v4
         with:
           name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check config properties appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__config-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Config input
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-input:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Config input
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,14 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__cpp-deptrace-disabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-disabled:
     strategy:
@@ -43,7 +34,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -51,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -60,6 +50,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -71,7 +62,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - run: |
+      - shell: bash
+        run: |
           if ls /usr/bin/errno; then
             echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
             exit 1

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
@@ -20,28 +20,16 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
       fail-fast: false
       matrix:
         include:
-          - os: macos-latest
-            version: linked
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -49,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -58,6 +46,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -69,7 +58,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
           else

.github/workflows/__cpp-deptrace-enabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled:
     strategy:
@@ -43,7 +34,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -51,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -60,6 +50,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -71,7 +62,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "Did not autoinstall errno"
             exit 1

.github/workflows/__diagnostics-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Diagnostic export
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   diagnostics-export:
     strategy:
@@ -38,10 +29,17 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Diagnostic export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -49,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -63,6 +61,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Add test diagnostics
+        shell: bash
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |
@@ -78,13 +77,13 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v4
         with:
           name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostics appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__export-file-baseline-information.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Export file baseline information
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   export-file-baseline-information:
     strategy:
@@ -63,7 +34,6 @@ jobs:
           - os: windows-latest
             version: nightly-latest
     name: Export file baseline information
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -79,32 +49,29 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v4
         with:
           name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"

.github/workflows/__extract-direct-to-toolcache.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Extract directly to toolcache
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  extract-direct-to-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Extract directly to toolcache
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_EXTRACT_TOOLCACHE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   extractor-ram-threads:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Extractor ram and threads options test
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,6 +51,7 @@ jobs:
           ram: 230
           threads: 1
       - name: Assert Results
+        shell: bash
         run: |
           if [ "${CODEQL_RAM}" != "230" ]; then
             echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"

.github/workflows/__global-proxy.yml

@@ -1,86 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Proxy test
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  global-proxy:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Proxy test
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-  # These steps are required to initialise the `gh` cli in a container that doesn't
-  # come pre-installed with it. The reason for that is that this is later
-  # needed by the `prepare-test` workflow to find the latest release of CodeQL.
-      - name: Set up GitHub CLI
-        run: |
-          apt update
-          apt install -y curl libreadline8 gnupg2 software-properties-common zstd
-          curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg
-          apt-key add /usr/share/keyrings/githubcli-archive-keyring.gpg
-          apt-add-repository https://cli.github.com/packages
-          apt install -y gh
-        env: {}
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'false'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-    env:
-      https_proxy: http://squid-proxy:3128
-      CODEQL_ACTION_TEST_MODE: true
-    container:
-      image: ubuntu:22.04
-    services:
-      squid-proxy:
-        image: ubuntu/squid:latest
-        ports:
-          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-custom-queries:
     strategy:
@@ -61,7 +32,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'Go: Custom queries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -69,7 +39,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -77,21 +47,16 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          go-version: '>=1.21.0'
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           languages: go
           config-file: ./.github/codeql/custom-queries.yml
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when Go is changed after init step'
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
@@ -49,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when Go is changed after init step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -57,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -65,27 +45,27 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+      # We need a Go version that ships with statically linked binaries on Linux
-          cache: false
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
   # Deliberately change Go after the `init` step
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: '1.20'
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when `file` is not installed'
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
@@ -49,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when `file` is not installed'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -57,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -65,11 +45,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+      # We need a Go version that ships with statically linked binaries on Linux
-          cache: false
+          go-version: '>=1.21.0'
       - name: Remove `file` program
         run: |
           echo $(which file)
@@ -80,13 +59,14 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: workaround for indirect tracing'
@@ -20,26 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
@@ -49,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: workaround for indirect tracing'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -57,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -65,19 +45,20 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+      # We need a Go version that ships with statically linked binaries on Linux
-          cache: false
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
             echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
               "CODEQL_ACTION_GO_BINARY environment variable is not set."

.github/workflows/__go-tracing-autobuilder.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with autobuilder step'
@@ -20,32 +20,21 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-autobuilder:
     strategy:
       fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -58,18 +47,6 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: macos-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: macos-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +60,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with autobuilder step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -91,7 +67,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -99,10 +75,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
           cache: false
       - uses: ./../action/init
         with:
@@ -110,7 +87,8 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
             echo "Expected the Go autobuilder to be run, but the" \
               "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with custom build steps'
@@ -20,32 +20,21 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
       fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -58,18 +47,6 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: macos-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: macos-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +60,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with custom build steps'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -91,7 +67,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -99,19 +75,22 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
           cache: false
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           # Once we start running Bash 4.2 in all environments, we can replace the
           # `! -z` flag with the more elegant `-v` which confirms that the variable
           # is actually unset and not potentially set to a blank value.

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with legacy workflow'
@@ -20,32 +20,21 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
       fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -58,18 +47,6 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: macos-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: macos-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +60,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with legacy workflow'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -91,7 +67,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -99,17 +75,19 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
           cache: false
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d go ]]; then
             echo "Did not find a Go database"

.github/workflows/__go.yml

@@ -1,80 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: Manual Check - go
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-jobs:
-  go-custom-queries:
-    name: 'Go: Custom queries'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-custom-queries.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-      dotnet-version: ${{ inputs.dotnet-version }}
-  go-indirect-tracing-workaround-diagnostic:
-    name: 'Go: diagnostic when Go is changed after init step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround-no-file-program:
-    name: 'Go: diagnostic when `file` is not installed'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround:
-    name: 'Go: workaround for indirect tracing'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-autobuilder:
-    name: 'Go: tracing with autobuilder step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-autobuilder.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-custom-build-steps:
-    name: 'Go: tracing with custom build steps'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-custom-build-steps.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-legacy-workflow:
-    name: 'Go: tracing with legacy workflow'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-legacy-workflow.yml
-    with:
-      go-version: ${{ inputs.go-version }}

.github/workflows/__init-with-registries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   init-with-registries:
     strategy:
@@ -38,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Download using registries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       packages: read
@@ -52,7 +54,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -73,6 +75,7 @@ jobs:
               token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Verify packages installed
+        shell: bash
         run: |
           PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
           CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
@@ -94,6 +97,7 @@ jobs:
           fi
 
       - name: Verify qlconfig.yml file was created
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
@@ -106,6 +110,9 @@ jobs:
           fi
 
       - name: Verify contents of qlconfig.yml
+    # yq is not available on windows
+        if: runner.os != 'Windows'
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'

.github/workflows/__javascript-source-root.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Custom source root
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   javascript-source-root:
     strategy:
@@ -43,7 +34,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Custom source root
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -51,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -60,6 +50,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Move codeql-action
+        shell: bash
         run: |
           mkdir ../new-source-root
           mv * ../new-source-root
@@ -72,6 +63,7 @@ jobs:
         with:
           skip-queries: true
       - name: Assert database exists
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d javascript ]]; then

.github/workflows/__job-run-uuid-sarif.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Job run UUID added to SARIF
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   job-run-uuid-sarif:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Job run UUID added to SARIF
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -64,12 +54,13 @@ jobs:
         with:
           output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v4
         with:
           name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)

.github/workflows/__language-aliases.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Language aliases
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   language-aliases:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Language aliases
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__local-bundle.yml

@@ -1,115 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Local CodeQL bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  local-bundle:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Local CodeQL bundle
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Fetch latest CodeQL bundle
-        run: |
-          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
-      - id: init
-        uses: ./../action/init
-        with:
-      # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
-          tools: ./codeql-bundle-linux64.tar.zst
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
@@ -20,52 +20,21 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   multi-language-autodetect:
     strategy:
       fail-fast: false
       matrix:
         include:
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.17.6
           - os: ubuntu-latest
@@ -78,18 +47,6 @@ jobs:
             version: stable-v2.19.4
           - os: ubuntu-latest
             version: stable-v2.19.4
-          - os: macos-latest
-            version: stable-v2.20.7
-          - os: ubuntu-latest
-            version: stable-v2.20.7
-          - os: macos-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: macos-latest
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -103,7 +60,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Multi-language repository
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -111,7 +67,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -119,23 +75,9 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
+      - uses: actions/setup-go@v5
-        uses: actions/setup-go@v6
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          go-version: '>=1.21.0'
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
 
       - uses: ./../action/init
         id: init
@@ -145,7 +87,13 @@ jobs:
             || '' }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze
@@ -154,6 +102,7 @@ jobs:
           upload-database: false
 
       - name: Check language autodetect for all languages excluding Swift
+        shell: bash
         run: |
           CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
           if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -193,6 +142,7 @@ jobs:
 
       - name: Check language autodetect for Swift on macOS
         if: runner.os == 'macOS'
+        shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
           if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -200,5 +150,4 @@ jobs:
             exit 1
           fi
     env:
-      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -1,78 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Overlay database init fallback
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  overlay-init-fallback:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Overlay database init fallback
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: actions # Any language without overlay support will do
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-        env:
-          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases/actions"
-          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
-            echo "This test needs to be updated to use a non-overlay language."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
@@ -68,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -81,14 +53,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -96,20 +61,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -117,6 +68,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -132,6 +84,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-inputs-js:
     strategy:
@@ -58,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,14 +53,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -86,15 +61,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -102,6 +68,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -117,6 +84,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-js:
     strategy:
@@ -58,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config file'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,14 +53,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -86,21 +61,13 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging.yml
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -116,6 +83,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-inputs-js:
     strategy:
@@ -58,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Action input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,14 +53,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -86,15 +61,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging2.yml
@@ -102,6 +68,7 @@ jobs:
           packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -116,6 +83,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__quality-queries.yml

@@ -1,148 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Quality queries input
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  quality-queries:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning,code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning,code-quality
-    name: Quality queries input
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-          post-processed-sarif-path: ${{ runner.temp }}/post-processed
-      - name: Upload security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/upload-artifact@v5
-        with:
-          name: |
-            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Upload quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/upload-artifact@v5
-        with:
-          name: |
-            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
-          path: ${{ runner.temp }}/results/javascript.quality.sarif
-          retention-days: 7
-      - name: Upload post-processed SARIF
-        uses: actions/upload-artifact@v5
-        with:
-          name: |
-            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
-          path: ${{ runner.temp }}/post-processed
-          retention-days: 7
-          if-no-files-found: error
-      - name: Check quality query does not appear in security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-          EXPECT_PRESENT: 'false'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-      - name: Check quality query appears in quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
-          EXPECT_PRESENT: 'true'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-    env:
-      CHECK_SCRIPT: |
-        const fs = require('fs');
-
-        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
-        const run = sarif.runs[0];
-        const extensions = run.tool.extensions;
-
-        if (extensions === undefined) {
-          core.setFailed('`extensions` property not found in the SARIF run property bag.');
-        }
-
-        // ID of a query we want to check the presence for
-        const targetId = 'js/regex/always-matches';
-        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
-
-        if (found && expectPresent) {
-          console.log(`Found rule with id '${targetId}'.`);
-        } else if (!found && !expectPresent) {
-          console.log(`Rule with id '${targetId}' was not found.`);
-        } else {
-          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
-        }
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Remote config file
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   remote-config:
     strategy:
@@ -71,7 +32,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Remote config file
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -79,7 +39,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -87,20 +47,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -108,6 +54,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__resolve-environment-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Resolve environment
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   resolve-environment-action:
     strategy:
@@ -38,12 +29,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Resolve environment
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -51,7 +53,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__rubocop-multi-language.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rubocop-multi-language:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: RuboCop multi-language
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -56,14 +46,17 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@8aeb6ff8030dd539317f8e1769a044873b56ea71 # v1.268.0
+        uses: ruby/setup-ruby@32110d4e311bd8996b2a82bf2a43b714ccc91777 # v1.221.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration
+        shell: bash
         run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
       - name: Install dependencies
+        shell: bash
         run: bundle install
       - name: RuboCop run
+        shell: bash
         run: |
           bash -c "
             bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif

.github/workflows/__ruby.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Ruby analysis
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   ruby:
     strategy:
@@ -49,7 +40,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Ruby analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -57,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -74,6 +64,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
           if [[ ! -d "$RUBY_DB" ]]; then

.github/workflows/__rust.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Rust analysis
@@ -20,26 +20,13 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rust:
     strategy:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.19.3
-          - os: ubuntu-latest
-            version: stable-v2.22.1
           - os: ubuntu-latest
             version: linked
           - os: ubuntu-latest
@@ -47,7 +34,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Rust analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -55,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -67,11 +53,14 @@ jobs:
         with:
           languages: rust
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_ACTION_RUST_ANALYSIS: true
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
           if [[ ! -d "$RUST_DB" ]]; then

.github/workflows/__split-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Split workflow
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   split-workflow:
     strategy:
@@ -69,7 +40,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Split workflow
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -77,7 +47,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -85,15 +55,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml
@@ -101,6 +62,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -109,6 +71,7 @@ jobs:
           upload-database: false
 
       - name: Assert No Results
+        shell: bash
         run: |
           if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
             echo "Expected results directory to be empty after skipping query execution!"
@@ -119,6 +82,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__start-proxy.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Start proxy
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   start-proxy:
     strategy:
@@ -43,7 +34,6 @@ jobs:
           - os: windows-latest
             version: linked
     name: Start proxy
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -51,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__submit-sarif-failure.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Submit SARIF after failure
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   submit-sarif-failure:
     strategy:
@@ -43,7 +34,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Submit SARIF after failure
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: write # needed to upload the SARIF file
@@ -52,7 +42,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -60,7 +50,7 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./init
         with:
           languages: javascript

.github/workflows/__swift-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Swift analysis using autobuild
@@ -20,16 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-autobuild:
     strategy:
@@ -39,7 +30,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,7 +37,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -61,7 +51,11 @@ jobs:
           languages: swift
           build-mode: autobuild
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
       - name: Check working directory
+        shell: bash
         run: pwd
       - uses: ./../action/autobuild
         timeout-minutes: 30
@@ -70,6 +64,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__swift-custom-build.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Swift analysis using a custom build command
@@ -20,36 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-custom-build:
     strategy:
@@ -63,7 +34,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using a custom build command
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -79,32 +49,26 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
       - uses: ./../action/init
         id: init
         with:
           languages: swift
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
       - name: Check working directory
+        shell: bash
         run: pwd
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__test-autobuild-working-dir.yml

@@ -0,0 +1,72 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-autobuild-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Autobuild working directory
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-local-codeql.yml

@@ -0,0 +1,65 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-local-codeql:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Local CodeQL bundle
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Fetch a CodeQL bundle
+        shell: bash
+        env:
+          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+        run: |
+          wget "$CODEQL_URL"
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-proxy.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Proxy test
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+  # These steps are required to initialise the `gh` cli in a container that doesn't
+  # come pre-installed with it. The reason for that is that this is later
+  # needed by the `prepare-test` workflow to find the latest release of CodeQL.
+      - name: Set up GitHub CLI
+        run: |
+          apt update
+          apt install -y curl libreadline8 gnupg2 software-properties-common zstd
+          curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-key add /usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-add-repository https://cli.github.com/packages
+          apt install -y gh
+        env: {}
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+    env:
+      https_proxy: http://squid-proxy:3128
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

.github/workflows/__unset-environment.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Test unsetting environment variables
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   unset-environment:
     strategy:
@@ -71,7 +32,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Test unsetting environment variables
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -79,7 +39,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -87,20 +47,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         id: init
         with:
@@ -108,13 +54,18 @@ jobs:
       # Swift is not supported on Ubuntu so we manually exclude it from the list here
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
       - name: Build code
+        shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
-      - run: |
+      - shell: bash
+        run: |
           CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
           if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
             echo "::error::Did not create a database for CPP, or created it in the wrong location." \

.github/workflows/__upload-ref-sha-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   upload-ref-sha-input:
     strategy:
@@ -68,8 +29,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -77,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -85,20 +49,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -106,6 +56,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
   # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze

.github/workflows/__upload-sarif.yml

@@ -1,187 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Test different uses of `upload-sarif`
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  upload-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning,code-quality
-    name: Test different uses of `upload-sarif`
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: csharp,java,javascript,python
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-      - name: Build code
-        run: ./build.sh
-  # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          upload: never
-          output: ${{ runner.temp }}/results
-
-      - name: |
-          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
-        uses: ./../action/upload-sarif
-        id: upload-sarif
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
-      - name: Fail for missing output from `upload-sarif` step for `code-scanning`
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Fail for missing output from `upload-sarif` step for `code-quality`
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Upload single SARIF file for Code Scanning
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-scanning
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
-      - name: Fail for missing output from `upload-single-sarif-code-scanning` step
-        if: contains(matrix.analysis-kinds, 'code-scanning') &&
-          !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Upload single SARIF file for Code Quality
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-quality
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
-      - name: Fail for missing output from `upload-single-sarif-code-quality` step
-        if: contains(matrix.analysis-kinds, 'code-quality') &&
-          !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Change SARIF file extension
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
-      - name: Upload single non-`.sarif` file
-        uses: ./../action/upload-sarif
-        id: upload-single-non-sarif
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
-      - name: Fail for missing output from `upload-single-non-sarif` step
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
@@ -20,46 +20,7 @@ on:
       - ready_for_review
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
+  workflow_dispatch: {}
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-      python-version:
-        type: string
-        description: The version of Python to install
-        required: false
-        default: '3.13'
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   with-checkout-path:
     strategy:
@@ -68,8 +29,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
     name: Use a custom `checkout_path`
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -77,7 +41,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -85,21 +49,8 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Python
-        if: matrix.version != 'nightly-latest'
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ inputs.python-version || '3.13' }}
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
       - name: Delete original checkout
+        shell: bash
         run: |
           # delete the original checkout so we don't accidentally use it.
           # Actions does not support deleting the current working directory, so we
@@ -107,7 +58,7 @@ jobs:
           rm -rf ./* .github .git
   # Check out the actions repo again, but at a different location.
   # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
         with:
           ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
           path: x/y/z/some-path
@@ -120,6 +71,7 @@ jobs:
           source-root: x/y/z/some-path/tests/multi-language-repo
 
       - name: Build code
+        shell: bash
         working-directory: x/y/z/some-path/tests/multi-language-repo
         run: |
           ./build.sh
@@ -131,31 +83,31 @@ jobs:
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
       - name: Verify SARIF after upload
+        shell: bash
         run: |
-          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"
           EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
 
           if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
             echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
             echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
             echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
     env:

.github/workflows/__zstd-bundle-streaming.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle (streaming)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle-streaming:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+    name: Zstandard bundle (streaming)
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            if (!toolsUrl.endsWith('.tar.zst')) {
+              core.setFailed(
+                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Zstandard bundle
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/check-expected-release-files.yml

@@ -9,20 +9,16 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   check-expected-release-files:
-    runs-on: ubuntu-slim
+    runs-on: ubuntu-latest
 
     permissions:
       contents: read
 
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -4,6 +4,7 @@ on:
   push:
     branches: [main, releases/v*]
   pull_request:
+    branches: [main, releases/v*]
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
@@ -12,17 +13,12 @@ on:
     - cron: '30 1 * * 0'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 env:
   CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
 jobs:
   # Identify the CodeQL tool versions to use in the analysis job.
   check-codeql-versions:
-    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
     outputs:
       versions: ${{ steps.compare.outputs.versions }}
@@ -31,7 +27,7 @@ jobs:
       contents: read
 
     steps:
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v4
     - name: Init with default CodeQL bundle from the VM image
       id: init-default
       uses: ./init
@@ -75,12 +71,11 @@ jobs:
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
   analyze-javascript:
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: [check-codeql-versions]
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-14,macos-15]
+        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-13,macos-14]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
@@ -90,36 +85,28 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v6
+      uses: actions/checkout@v4
     - name: Initialize CodeQL
       uses: ./init
       id: init
       with:
         languages: javascript
-        config-file: ./.github/codeql/codeql-config-javascript.yml
+        config-file: ./.github/codeql/codeql-config.yml
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: >
+      run: ${{steps.init.outputs.codeql-path}} version --format=json
-        "$CODEQL" version --format=json
-      env:
-        CODEQL: ${{steps.init.outputs.codeql-path}}
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
         category: "/language:javascript"
-        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && 'always') || 'never' }}
 
-  analyze-other:
+
-    if: github.triggering_actor != 'dependabot[bot]'
+  analyze-actions:
     runs-on: ubuntu-latest
 
     strategy:
       fail-fast: false
-      matrix:
-        include:
-          - language: actions
-          - language: python
 
     permissions:
       contents: read
@@ -127,19 +114,13 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v6
+      uses: actions/checkout@v4
     - name: Initialize CodeQL
       uses: ./init
       with:
-        languages: ${{ matrix.language }}
+        languages: actions
-        build-mode: none
+        config-file: ./.github/codeql/codeql-actions-config.yml
-        config: >
-          paths-ignore:
-            - lib
-            - tests
-          queries:
-            - uses: security-and-quality
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
-        category: "/language:${{ matrix.language }}"
+        category: "/language:actions"

.github/workflows/codescanning-config-cli.yml

@@ -3,9 +3,6 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  # Diff informed queries add an additional query filter which is not yet
-  # taken into account by these tests.
-  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
 
 on:
   push:
@@ -22,13 +19,8 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   code-scanning-config-tests:
-    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
     permissions:
@@ -42,10 +34,16 @@ jobs:
         include:
         - os: ubuntu-latest
           version: linked
+        - os: macos-latest
+          version: linked
         - os: ubuntu-latest
           version: default
+        - os: macos-latest
+          version: default
         - os: ubuntu-latest
           version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -53,50 +51,20 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v6
+      uses: actions/checkout@v4
-
-    - name: Set up Node.js
-      uses: actions/setup-node@v6
-      with:
-        node-version: 24
-        cache: 'npm'
-
-    - name: Install dependencies
-      run: npm ci
-
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
         version: ${{ matrix.version }}
 
-    # On PRs, overlay analysis may change the config that is passed to the CLI.
+    - name: Empty file
-    # Therefore, we have two variants of the following test, one for PRs and one for other events.
-    - name: Empty file (non-PR)
-      if: github.event_name != 'pull_request'
       uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: "{}"
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-    - name: Empty file (PR)
-      if: github.event_name == 'pull_request'
-      uses: ./../action/.github/actions/check-codescanning-config
-      with:
-        expected-config-file-contents: |
-          {
-            "query-filters": [
-              {
-                "exclude": {
-                  "tags": "exclude-from-incremental"
-                }
-              }
-            ]
-          }
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
     - name: Packs from input
       if: success() || failure()
       uses: ./../action/.github/actions/check-codescanning-config
@@ -195,13 +163,13 @@ jobs:
       with:
         expected-config-file-contents: |
           {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
             "packs": {
               "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
-            },
+            }
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
-            ]
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql

.github/workflows/debug-artifacts-failure-safe.yml

@@ -17,14 +17,8 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
-
-defaults:
-  run:
-    shell: bash
-
 jobs:
   upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -45,19 +39,15 @@ jobs:
       - name: Dump GitHub event
         run: cat "${GITHUB_EVENT_PATH}"
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: '9.x'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -65,6 +55,7 @@ jobs:
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
@@ -75,7 +66,6 @@ jobs:
           expect-error: true
   download-and-check-artifacts:
     name: Download and check debug artifacts after failure in analyze
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -83,8 +73,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v6
+        uses: actions/download-artifact@v4
       - name: Check expected artifacts exist
+        shell: bash
         run: |
           LANGUAGES="cpp csharp go java javascript python"
           for version in $VERSIONS; do

.github/workflows/debug-artifacts-safe.yml

@@ -16,14 +16,8 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
-
-defaults:
-  run:
-    shell: bash
-
 jobs:
   upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -41,19 +35,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: '9.x'
       - uses: ./../action/init
         id: init
         with:
@@ -64,12 +54,12 @@ jobs:
           # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
           languages: cpp,csharp,go,java,javascript,python,ruby
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
   download-and-check-artifacts:
     name: Download and check debug artifacts
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -77,8 +67,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v6
+        uses: actions/download-artifact@v4
       - name: Check expected artifacts exist
+        shell: bash
         run: |
           VERSIONS="stable-v2.20.3 default linked nightly-latest"
           LANGUAGES="cpp csharp go java javascript python"

.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,49 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      security-events: read
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: linked
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+
+    - name: Check Sarif
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

.github/workflows/label-pr-size.yml

@@ -1,26 +0,0 @@
-name: Label PR with size
-
-on:
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - edited
-      - ready_for_review
-
-permissions:
-  contents: read
-  pull-requests: write
-
-jobs:
-  sizeup:
-    name: Label PR with size
-    runs-on: ubuntu-slim
-
-    steps:
-      - name: Run sizeup
-        uses: lerebear/sizeup-action@b7beb3dd273e36039e16e48e7bc690c189e61951 # 0.8.12
-        with:
-          token: "${{ secrets.GITHUB_TOKEN }}"
-          configuration-file-path: ".github/sizeup.yml"

.github/workflows/post-release-mergeback.yml

@@ -3,7 +3,7 @@
 #    tag
 # 2. Updates the `vN` tag to refer to this merge commit.
 # 3. Iff vN == vLatest, merges any changes from the release back into the main branch.
-#    Typically, this is two commits – one to update the version number and one to rebuild.
+#    Typically, this is two commits – one to update the version number and one to update dependencies.
 name: Tag release and merge back
 
 on:
@@ -18,13 +18,9 @@ on:
     branches:
       - releases/v*
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   merge-back:
-    runs-on: ubuntu-slim
+    runs-on: ubuntu-latest
     environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
@@ -44,13 +40,10 @@ jobs:
           GITHUB_CONTEXT: '${{ toJson(github) }}'
         run: echo "${GITHUB_CONTEXT}"
 
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@v6
+      - uses: actions/setup-node@v4
-      - uses: actions/setup-python@v6
-        with:
-          python-version: '3.12'
 
       - name: Update git config
         run: |
@@ -131,25 +124,57 @@ jobs:
           cat $PARTIAL_CHANGELOG
           echo "::endgroup::"
 
-      - name: Create mergeback branch and PR
+      - name: Create mergeback branch
         if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
-        uses: ./.github/actions/prepare-mergeback-branch
+        env:
-        with:
+          VERSION: "${{ steps.getVersion.outputs.version }}"
-          base: "${{ env.BASE_BRANCH }}"
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
-          head: "${{ env.HEAD_BRANCH }}"
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
-          branch: "${{ steps.getVersion.outputs.newBranch }}"
+        run: |
-          version: "${{ steps.getVersion.outputs.version }}"
+          set -exu
-          token: "${{ secrets.GITHUB_TOKEN }}"
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
+
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                  selected rather than "Squash and merge" or "Rebase and merge".
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
+
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+          git add .
+          git commit -m "Update changelog and version after ${VERSION}"
+
+          git push origin "${NEW_BRANCH}"
+
+          # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+          # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+          gh pr create \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
+            --label "Update dependencies" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
+            --draft
 
       - name: Generate token
-        uses: actions/create-github-app-token@v2.2.0
+        uses: actions/create-github-app-token@v1.11.6
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}
           private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
 
       - name: Create the GitHub release
-        if: steps.check.outputs.exists != 'true'
         env:
           PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
           VERSION: "${{ steps.getVersion.outputs.version }}"

.github/workflows/pr-checks.yml

@@ -8,79 +8,99 @@ on:
     types: [opened, synchronize, reopened, ready_for_review]
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
-  unit-tests:
+  check-js:
-    name: Unit Tests
+    name: Check JS
-    if: github.triggering_actor != 'dependabot[bot]'
+    runs-on: ubuntu-latest
-    strategy:
+    timeout-minutes: 45
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-        node-version: [20, 24]
     permissions:
       contents: read
       security-events: write # needed to upload ESLint results
-    runs-on: ${{ matrix.os }}
+
+    strategy:
+      fail-fast: false
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Lint
+        id: lint
+        run: npm run-script lint-ci
+
+      - name: Upload sarif
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: eslint.sarif
+          category: eslint
+
+      - name: Check generated JS
+        run: .github/workflows/script/check-js.sh
+
+  check-node-modules:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check modules up to date
+    permissions:
+      contents: read
+    runs-on: macos-latest
     timeout-minutes: 45
 
     steps:
-      - name: Prepare git (Windows)
+      - uses: actions/checkout@v4
-        if: runner.os == 'Windows'
+      - name: Check node modules up to date
-        run: git config --global core.autocrlf false
+        run: .github/workflows/script/check-node-modules.sh
 
-      - uses: actions/checkout@v6
+  check-file-contents:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check file contents
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
 
-      - name: Set up Node.js
+    steps:
-        uses: actions/setup-node@v6
+      - name: Checkout
-        with:
+        uses: actions/checkout@v4
-          node-version: ${{ matrix.node-version }}
-          cache: 'npm'
 
       - name: Set up Python
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v5
         with:
           python-version: 3.11
 
       - name: Install dependencies
         run: |
-          # Use the system Bash shell to ensure we can run commands like `npm ci`
+          python -m pip install --upgrade pip
-          # that are not available in the default shell on Windows.
+          # When updating this, update the autogenerated code header in `sync.py` too.
-          npm config set script-shell bash
+          pip install ruamel.yaml==0.17.31
-          npm ci
-
-      - name: Verify compiled JS up to date
-        run: .github/workflows/script/check-js.sh
 
+      # Ensure the generated PR check workflows are up to date.
       - name: Verify PR checks up to date
-        if: always()
         run: .github/workflows/script/verify-pr-checks.sh
 
-      - name: Run unit tests
+  npm-test:
-        if: always()
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
-        run: npm test
+    name: Unit Test
+    needs: [check-js, check-node-modules]
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+    permissions:
+      contents: read
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 45
 
-      - name: Run pr-checks tests
+    steps:
-        if: always()
+      - uses: actions/checkout@v4
-        working-directory: pr-checks
+      - name: npm test
-        run: python -m unittest discover
+        run: |
-
+          # Run any commands referenced in package.json using Bash, otherwise
-      - name: Lint
+          # we won't be able to find them on Windows.
-        if: always() && matrix.os != 'windows-latest'
+          npm config set script-shell bash
-        run: npm run lint-ci
+          npm test
-
-      - name: Upload sarif
-        uses: github/codeql-action/upload-sarif@v4
-        if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24
-        with:
-          sarif_file: eslint.sarif
-          category: eslint
 
   check-node-version:
-    if: github.event.pull_request && github.triggering_actor != 'dependabot[bot]'
+    if: github.event.pull_request
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45
@@ -91,7 +111,7 @@ jobs:
       contents: read
 
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - id: head-version
         name: Verify all Actions use the same Node version
         run: |
@@ -106,7 +126,7 @@ jobs:
       - id: checkout-base
         name: 'Backport: Check out base ref'
         if: ${{ startsWith(github.head_ref, 'backport-') }}
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
           ref: ${{ env.BASE_REF }}
 

.github/workflows/prepare-release.yml

@@ -1,77 +0,0 @@
-name: Prepare release
-on:
-  workflow_call:
-    outputs:
-      version:
-        description: "The version that is being released."
-        value: ${{ jobs.prepare.outputs.version }}
-      major_version:
-        description: "The major version of the release."
-        value: ${{ jobs.prepare.outputs.major_version }}
-      latest_tag:
-        description: "The most recent, existing release tag."
-        value: ${{ jobs.prepare.outputs.latest_tag }}
-      backport_source_branch:
-        description: "The release branch for the given tag."
-        value: ${{ jobs.prepare.outputs.backport_source_branch }}
-      backport_target_branches:
-        description: "JSON encoded list of branches to target with backports."
-        value: ${{ jobs.prepare.outputs.backport_target_branches }}
-
-  push:
-    paths:
-      - .github/workflows/prepare-release.yml
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    runs-on: ubuntu-slim
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    outputs:
-      version: ${{ steps.versions.outputs.version }}
-      major_version: ${{ steps.versions.outputs.major_version }}
-      latest_tag: ${{ steps.versions.outputs.latest_tag }}
-      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
-      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v6
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Get version tags
-        id: versions
-        run: |
-          VERSION="v$(jq '.version' -r 'package.json')"
-          echo "version=${VERSION}" >> $GITHUB_OUTPUT
-          MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
-          echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
-          LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
-          echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
-
-      - name: Determine older release branches
-        id: branches
-        uses: ./.github/actions/release-branches
-        with:
-          major_version: ${{ steps.versions.outputs.major_version }}
-          latest_tag: ${{ steps.versions.outputs.latest_tag }}
-
-      - name: Print release information
-        run: |
-          echo 'version: ${{ steps.versions.outputs.version }}'
-          echo 'major_version: ${{ steps.versions.outputs.major_version }}'
-          echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
-          echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
-          echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'

.github/workflows/publish-immutable-action.yml

@@ -1,27 +1,35 @@
 name: 'Publish Immutable Action Version'
 
 on:
-  push:
+  release:
-    tags:
+    types: [published]
-      # Match version tags, but not the major version tags.
-      - 'v[0-9]+.**'
-
-defaults:
-  run:
-    shell: bash
 
 jobs:
   publish:
-    runs-on: ubuntu-slim
+    runs-on: ubuntu-latest
     permissions:
       contents: read
       id-token: write
       packages: write
 
     steps:
-      - name: Checkout repository
+      - name: Check release name
-        uses: actions/checkout@v6
+        id: check
-
+        env:
-      - name: Publish immutable release
+          RELEASE_NAME: ${{ github.event.release.name }}
+        run: |
+          echo "Release name: ${{ github.event.release.name }}"
+          if [[ $RELEASE_NAME == v* ]]; then
+            echo "This is a CodeQL Action release. Create an Immutable Action"
+            echo "is-action-release=true" >> $GITHUB_OUTPUT
+          else
+            echo "This is a CodeQL Bundle release. Do not create an Immutable Action"
+            echo "is-action-release=false" >> $GITHUB_OUTPUT
+          fi
+      - name: Checking out
+        if: steps.check.outputs.is-action-release == 'true'
+        uses: actions/checkout@v4
+      - name: Publish
+        if: steps.check.outputs.is-action-release == 'true'
         id: publish
         uses: actions/publish-immutable-action@v0.0.4

.github/workflows/python312-windows.yml

@@ -12,13 +12,8 @@ on:
     - cron: '0 0 * * 1'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   test-setup-python-scripts:
-    if: github.triggering_actor != 'dependabot[bot]'
     env:
       CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
@@ -27,11 +22,11 @@ jobs:
     runs-on: windows-latest
 
     steps:
-    - uses: actions/setup-python@v6
+    - uses: actions/setup-python@v5
       with:
         python-version: 3.12
 
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v4
 
     - name: Prepare test
       uses: ./.github/actions/prepare-test

.github/workflows/query-filters.yml

@@ -15,31 +15,16 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   query-filters:
     name: Query Filters Tests
-    if: github.triggering_actor != 'dependabot[bot]'
     timeout-minutes: 45
     runs-on: ubuntu-latest
     permissions:
       contents: read # This permission is needed to allow the GitHub Actions workflow to read the contents of the repository.
     steps:
     - name: Check out repository
-      uses: actions/checkout@v6
+      uses: actions/checkout@v4
-
-    - name: Install Node.js
-      uses: actions/setup-node@v6
-      with:
-        node-version: 24
-        cache: npm
-
-    - name: Install dependencies
-      run: npm ci
-
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test

.github/workflows/rebuild.yml

@@ -5,32 +5,22 @@ on:
     types: [labeled]
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   rebuild:
     name: Rebuild Action
     runs-on: ubuntu-latest
-    if: github.event.label.name == 'Rebuild' || github.event_name == 'workflow_dispatch'
+    if: github.event.label.name == 'Rebuild'
-
-    env:
-      HEAD_REF: ${{ github.event.pull_request.head.ref || github.event.ref }}
-      BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
 
     permissions:
       contents: write # needed to push rebuilt commit
       pull-requests: write # needed to comment on the PR
     steps:
       - name: Checkout
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
-          fetch-depth: 0
+          ref: ${{ github.event.pull_request.head.ref }}
-          ref: ${{ env.HEAD_REF }}
 
       - name: Remove label
-        if: github.event_name == 'pull_request'
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
@@ -38,103 +28,55 @@ jobs:
           gh pr edit --repo github/codeql-action "$PR_NUMBER" \
             --remove-label "Rebuild"
 
-      - name: Configure git
-        run: |
-          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
-          git config --global user.name "github-actions[bot]"
-
       - name: Merge in changes from base branch
-        id: merge
+        env:
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref }}
         run: |
           git fetch origin "$BASE_BRANCH"
 
           # Allow merge conflicts in `lib`, since rebuilding should resolve them.
-          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected, continuing."
+          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected"
-          MERGE_RESULT=$?
 
-          if [ "$MERGE_RESULT" -ne 0 ]; then
+          # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
-            echo "merge-in-progress=true" >> $GITHUB_OUTPUT
+          # since `node_modules/@types/semver/README.md` fails it.
-
+          if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
-            # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
+            echo "Merge conflicts detected outside of lib/ directory. Please resolve them manually."
-            # since `node_modules/@types/semver/README.md` fails it.
+            git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
-            if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
+            exit 1
-              echo "Merge conflicts were detected outside of the lib directory. Please resolve them manually."
-              git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
-              exit 1
-            fi
-
-            echo "No merge conflicts found outside the lib directory. We should be able to resolve all of" \
-              "these by rebuilding the Action."
           fi
 
       - name: Compile TypeScript
         run: |
-          npm ci
+          npm install
           npm run lint -- --fix
           npm run build
 
       - name: Set up Python
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v5
         with:
           python-version: 3.11
 
-      - name: Sync back version updates to generated workflows
-        # Only sync back versions on Dependabot update PRs
-        if: startsWith(env.HEAD_REF, 'dependabot/')
-        working-directory: pr-checks
-        run: |
-          python3 sync_back.py -v
-
       - name: Generate workflows
-        working-directory: pr-checks
         run: |
+          cd pr-checks
           python -m pip install --upgrade pip
           pip install ruamel.yaml==0.17.31
           python3 sync.py
 
-      - name: "Merge in progress: Finish merge and push"
+      - name: Check for changes and push
-        if: steps.merge.outputs.merge-in-progress == 'true'
-        run: |
-          echo "Finishing merge and pushing changes."
-          git add --all
-          git commit --no-edit
-          git push
-
-      - name: "No merge in progress: Check for changes and push"
-        if: steps.merge.outputs.merge-in-progress != 'true'
-        id: push
-        run: |
-          if [ ! -z "$(git status --porcelain)" ]; then
-            echo "Changes detected, committing and pushing."
-            git add --all
-            # If the merge originally had conflicts, finish the merge.
-            # Otherwise, just commit the changes.
-            if git rev-parse --verify MERGE_HEAD >/dev/null 2>&1; then
-              echo "In progress merge detected, finishing it up."
-              git merge --continue
-            else
-              echo "No in-progress merge detected, committing changes."
-              git commit -m "Rebuild"
-            fi
-            echo "Pushing changes"
-            git push
-            echo "changes=true" >> $GITHUB_OUTPUT
-          else
-            echo "No changes detected, nothing to commit."
-          fi
-
-      - name: Notify about rebuild
-        if: >-
-          github.event_name == 'pull_request' &&
-            (
-              steps.merge.outputs.merge-in-progress == 'true' ||
-              steps.push.outputs.changes == 'true'
-            )
         env:
+          BRANCH: ${{ github.event.pull_request.head.ref }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
         run: |
-          echo "Pushed a commit to rebuild the Action." \
+          if [ ! -z "$(git status --porcelain)" ]; then
-            "Please mark the PR as ready for review to trigger PR checks." |
+            git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
-            gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
+            git config --global user.name "github-actions[bot]"
-          gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"
+            git add --all
+            git commit -m "Rebuild"
+            git push origin "HEAD:$BRANCH"
+            echo "Pushed a commit to rebuild the Action." \
+              "Please mark the PR as ready for review to trigger PR checks." |
+              gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
+            gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"
+          fi

.github/workflows/rollback-release.yml

@@ -1,186 +0,0 @@
-name: Rollback release
-on:
-  # You can trigger this workflow via workflow dispatch to start a rollback.
-  # This will create a draft release that mirrors the release for `rollback-tag`.
-  workflow_dispatch:
-    inputs:
-      rollback-tag:
-        type: string
-        description: "The tag of an old release to roll-back to."
-        required: true
-  # Only for dry-runs of changes to the workflow.
-  push:
-    # Don't run dry-run on release branches, to avoid an issue where the
-    # "new" tag determined by the "Prepare release" job already exists.
-    branches-ignore:
-      - releases/v*
-    paths:
-      - .github/workflows/rollback-release.yml
-      - .github/actions/prepare-mergeback-branch/**
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    uses: ./.github/workflows/prepare-release.yml
-
-  rollback:
-    name: "Create rollback release"
-    if: github.repository == 'github/codeql-action'
-    runs-on: ubuntu-latest
-    timeout-minutes: 45
-
-    # Don't set the deployment environment for test runs
-    # The Actions token does not have permissions to push changes to workflow files.
-    # Since workflow files may change as part of a backport PR, we use the "Automation" environment for real runs to authenticate as a GitHub App and push these changes.
-    environment: ${{ github.event_name == 'workflow_dispatch' && 'Automation' || '' }}
-
-    needs:
-      - prepare
-
-    permissions:
-      contents: write # needed to push to the repo (tags and releases)
-      pull-requests: write # needed to create the mergeback PR
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v6
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Create tag for testing
-        if: github.event_name != 'workflow_dispatch'
-        run: git tag v0.0.0
-
-      # We start by preparing the mergeback branch, mainly so that we have the updated changelog
-      # readily available for the partial changelog that's needed for the release.
-      - name: Prepare mergeback branch
-        id: mergeback-branch
-        env:
-          BASE_BRANCH: ${{ (github.event_name == 'workflow_dispatch' && 'main') || github.ref_name }}
-          VERSION: ${{ needs.prepare.outputs.version }}
-        run: |
-          set -x
-
-          # Checkout the base branch, since we may be testing on a different branch
-          git checkout "$BASE_BRANCH"
-
-          # Generate a new branch name for the mergeback PR
-          short_sha="${GITHUB_SHA:0:8}"
-          NEW_BRANCH="mergeback/${VERSION}-to-${BASE_BRANCH}-${short_sha}"
-          echo "new-branch=${NEW_BRANCH}" >> $GITHUB_OUTPUT
-
-          # Create the mergeback branch
-          git checkout -b "${NEW_BRANCH}"
-
-      - name: Prepare rollback changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
-          # but use `v0.0.0` for testing.
-          ROLLBACK_TAG: ${{ inputs.rollback-tag || 'v0.0.0' }}
-          LATEST_TAG: ${{ needs.prepare.outputs.latest_tag }}
-          VERSION: "${{ needs.prepare.outputs.version }}"
-        run: |
-          python .github/workflows/script/rollback_changelog.py \
-            --target-version "${ROLLBACK_TAG:1}" \
-            --rollback-version "${LATEST_TAG:1}" \
-            --new-version "$VERSION" > $NEW_CHANGELOG
-
-          echo "::group::New CHANGELOG"
-          cat $NEW_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Create tags
-        env:
-          # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
-          # but use `v0.0.0` for testing.
-          ROLLBACK_TAG: ${{ inputs.rollback-tag || 'v0.0.0' }}
-          RELEASE_TAG: ${{ needs.prepare.outputs.version }}
-          MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
-        run: |
-          git checkout "refs/tags/${ROLLBACK_TAG}"
-          git tag --annotate "${RELEASE_TAG}" --message "${RELEASE_TAG}"
-          git tag --annotate "${MAJOR_VERSION_TAG}" --message "${MAJOR_VERSION_TAG}" --force
-
-      - name: Push tags
-        # skip when testing
-        if: github.event_name == 'workflow_dispatch'
-        env:
-          RELEASE_TAG: ${{ needs.prepare.outputs.version }}
-          MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
-        run: |
-          git push origin --atomic --force refs/tags/"${RELEASE_TAG}" refs/tags/"${MAJOR_VERSION_TAG}"
-
-      - name: Prepare partial Changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-          VERSION: "${{ needs.prepare.outputs.version }}"
-        run: |
-          python .github/workflows/script/prepare_changelog.py $NEW_CHANGELOG "$VERSION" > $PARTIAL_CHANGELOG
-
-          echo "::group::Partial CHANGELOG"
-          cat $PARTIAL_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Generate token
-        if: github.event_name == 'workflow_dispatch'
-        uses: actions/create-github-app-token@v2.2.0
-        id: app-token
-        with:
-          app-id: ${{ vars.AUTOMATION_APP_ID }}
-          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
-
-      - name: Create the rollback release
-        if: github.event_name == 'workflow_dispatch'
-        env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-          VERSION: "${{ needs.prepare.outputs.version }}"
-          GH_TOKEN: ${{ steps.app-token.outputs.token }}
-          RELEASE_URL: "${{ github.server_url }}/${{ github.repository }}/releases/tag/${{ needs.prepare.outputs.version }}"
-        run: |
-          set -exu
-
-          # Do not mark this release as latest. The most recent bundle release must be marked as latest.
-          # Set as a draft to give us an opportunity to review the rollback release.
-          gh release create \
-            "$VERSION" \
-            --latest=false \
-            --draft \
-            --title "$VERSION" \
-            --notes-file "$PARTIAL_CHANGELOG"
-
-          echo "Created draft rollback release at $RELEASE_URL" >> $GITHUB_STEP_SUMMARY
-
-      - name: Update changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          NEW_BRANCH: "${{ steps.mergeback-branch.outputs.new-branch }}"
-        run: |
-          git checkout "${NEW_BRANCH}"
-          mv ${NEW_CHANGELOG} CHANGELOG.md
-
-      - name: Create mergeback branch and PR
-        uses: ./.github/actions/prepare-mergeback-branch
-        with:
-          base: "main"
-          head: ""
-          branch: "${{ steps.mergeback-branch.outputs.new-branch }}"
-          version: "${{ needs.prepare.outputs.version }}"
-          token: "${{ secrets.GITHUB_TOKEN }}"
-          # Setting this to `true` for non-workflow_dispatch events will
-          # still push the `branch`, but won't create a corresponding PR
-          dry-run: "${{ github.event_name != 'workflow_dispatch' }}"
-

.github/workflows/script/bundle_changelog.py

@@ -1,18 +0,0 @@
-import os
-import re
-
-# Get the PR number from the PR URL.
-pr_number = os.environ['PR_URL'].split('/')[-1]
-changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
-
-# If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
-with open('CHANGELOG.md', 'r') as f:
-    changelog = f.read()
-
-changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
-
-# Add the changelog note to the bottom of the "[UNRELEASED]" section.
-changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
-
-with open('CHANGELOG.md', 'w') as f:
-    f.write(changelog)

.github/workflows/script/check-js.sh

@@ -16,18 +16,6 @@ if [ ! -z "$(git status --porcelain)" ]; then
     # If we get a fail here then the PR needs attention
     >&2 echo "Failed: JavaScript files are not up to date. Run 'rm -rf lib && npm run-script build' to update"
     git status
-
-    echo "### Transpiled JS diff" >> $GITHUB_STEP_SUMMARY
-    echo "" >> $GITHUB_STEP_SUMMARY
-    echo '```diff' >> $GITHUB_STEP_SUMMARY
-    git diff --output="$RUNNER_TEMP/js.diff"
-    cat "$RUNNER_TEMP/js.diff" >> $GITHUB_STEP_SUMMARY
-    echo '```' >> $GITHUB_STEP_SUMMARY
-
-    # Reset bundled files to allow other checks to test for changes
-    git checkout lib
-
-    # Fail this check
     exit 1
 fi
 echo "Success: JavaScript files are up to date"

.github/workflows/script/check-node-modules.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+set -eu
+
+# Sanity check that repo is clean to start with
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then this workflow needs attention...
+    >&2 echo "Failed: Repo should be clean before testing!"
+    exit 1
+fi
+
+"$(dirname "$0")/update-node-modules.sh" check-only
+
+# Check that repo is still clean
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then the PR needs attention
+    >&2 echo "Failed: node_modules are not up to date. Add the 'Update dependencies' label to your PR to update them. Note it is important that node modules are updated on macOS and not any other operating system as there is one dependency (fsevents) that is needed for macOS and may not be installed if dependencies are updated on a Windows or Linux machine."
+    git status
+    exit 1
+fi
+echo "Success: node_modules are up to date"

.github/workflows/script/prepare_changelog.py

@@ -12,7 +12,7 @@ def extract_changelog_snippet(changelog_file, version_tag):
     output = EMPTY_CHANGELOG
 
   else:
-    with open(changelog_file, 'r') as f:
+    with open('CHANGELOG.md', 'r') as f:
       lines = f.readlines()
 
       # Include everything up to, but excluding the second heading

.github/workflows/script/rollback_changelog.py

@@ -1,62 +0,0 @@
-import datetime
-import os
-import argparse
-
-EMPTY_CHANGELOG = """# CodeQL Action Changelog
-
-"""
-
-def get_today_string():
-  today = datetime.datetime.today()
-  return '{:%d %b %Y}'.format(today)
-
-# Include everything up to and after the first heading,
-# but not the first heading and body.
-def drop_unreleased_section(lines: list[str]):
-  before_first_section = ''
-  after_first_section = ''
-  found_first_section = False
-  skipped_first_section = False
-
-  for i, line in enumerate(lines):
-    if line.startswith('## ') and not found_first_section:
-      found_first_section = True
-    elif line.startswith('## ') and found_first_section:
-      skipped_first_section = True
-
-    if not found_first_section:
-      before_first_section += line
-    if skipped_first_section:
-      after_first_section += line
-
-  return (before_first_section, after_first_section)
-
-def update_changelog(target_version, rollback_version, new_version):
-  before_first_section = EMPTY_CHANGELOG
-  after_first_section = ''
-
-  if (os.path.exists('CHANGELOG.md')):
-    with open('CHANGELOG.md', 'r') as f:
-      (before_first_section, after_first_section) = drop_unreleased_section(f.readlines())
-
-  newHeader = f'## {new_version} - {get_today_string()}\n'
-
-  print(before_first_section, end="")
-  print(newHeader)
-  print(f"This release rolls back {rollback_version} due to issues with that release. It is identical to {target_version}.\n")
-  print(after_first_section)
-
-# We expect three version strings as input:
-#
-# - target_version: the version that we are re-releasing as `new_version`
-# - rollback_version: the version that we are rolling back, typically the one that followed `target_version`
-# - new_version: the new version that we are releasing `target_version` as, typically the one that follows `rollback_version`
-#
-# Example: python3 .github/workflows/script/rollback_changelog.py --target-version "1.2.3" --rollback-version "1.2.4" --new-version "1.2.5"
-parser = argparse.ArgumentParser(description="Update CHANGELOG.md for a rollback release.")
-parser.add_argument("--target-version", "-t", required=True, help="Version to re-release as new_version.")
-parser.add_argument("--rollback-version", "-r", required=True, help="Version being rolled back.")
-parser.add_argument("--new-version", "-n", required=True, help="New version to publish for target_version.")
-args = parser.parse_args()
-
-update_changelog(args.target_version, args.rollback_version, args.new_version)

.github/workflows/script/update-node-modules.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+set -eu
+
+if [ "$1" != "update" ] && [ "$1" != "check-only" ]; then
+    >&2 echo "Failed: Invalid argument. Must be 'update' or 'check-only'"
+    exit 1
+fi
+
+npm install --force -g npm@9.2.0
+
+# clean the npm cache to ensure we don't have any files owned by root
+sudo npm cache clean --force
+
+if [ "$1" = "update" ]; then
+    npm install
+fi
+
+# Reinstall modules and then clean to remove absolute paths
+# Use 'npm ci' instead of 'npm install' as this is intended to be reproducible
+npm ci
+npm run removeNPMAbsolutePaths

.github/workflows/script/update-required-checks.sh

@@ -1,7 +1,6 @@
 #!/usr/bin/env bash
 # Update the required checks based on the current branch.
-
+# Typically, this will be main.
-set -euo pipefail
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
 REPO_DIR="$(dirname "$SCRIPT_DIR")"
@@ -29,16 +28,10 @@ fi
 echo "Getting checks for $GITHUB_SHA"
 
 # Ignore any checks with "https://", CodeQL, LGTM, Update, and ESLint checks.
-CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") or . == "Agent" or . == "Cleanup artifacts" or . == "Prepare" or . == "Upload results" | not)] | unique | sort')"
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
 
 echo "$CHECKS" | jq
 
-# Fail if there are no checks
-if [ -z "$CHECKS" ] || [ "$(echo "$CHECKS" | jq '. | length')" -eq 0 ]; then
-  echo "No checks found for $GITHUB_SHA"
-  exit 1
-fi
-
 echo "{\"contexts\": ${CHECKS}}" > checks.json
 
 echo "Updating main"