Mergeback v2.1.27 refs/heads/releases/v2 into main (#1289)

* Merge main into releases/v2 (#1287)

* Update changelog and version after v2.1.26

* Update checked-in dependencies

* Don't check for Go logs on failure (#1279)

* Update supported GitHub Enterprise Server versions. (#1275)

Co-authored-by: GitHub <noreply@github.com>

* TRAP Caching: Add timeouts to upload/download operations

* Add logging statements declaring state of the cli_config_file_enabled

It's possible to determine this otherwise, but this makes it easier to
spot.

* Avoid using single value as array

The user config parser in the CLI doesn't yet support it.

* Extract logging statements to separate function

* Correctly report CodeQL version when using cache (#1259)

* Correctly report CodeQL version when using cache

* Add JS generated files

* Add test for return value of `setupCodeQL`

* Fill in missing return value comment

* Convert "Invalid source root" errors to UserErrors

* Add changelog note for Go extraction reconciliation (#1286)

* Add changelog note for Go extraction reconciliation

* Update CHANGELOG.md

Co-authored-by: Henry Mercer <henrymercer@github.com>

* Update CHANGELOG.md

Co-authored-by: Andrew Eisenberg <aeisenberg@github.com>

* Tweaks from PR review

Co-authored-by: Henry Mercer <henrymercer@github.com>
Co-authored-by: Andrew Eisenberg <aeisenberg@github.com>

* Update changelog for v2.1.27

Co-authored-by: github-actions[bot] <github-actions@github.com>
Co-authored-by: Chuan-kai Lin <cklin@github.com>
Co-authored-by: Angela P Wen <angelapwen@github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: GitHub <noreply@github.com>
Co-authored-by: Edoardo Pirovano <edoardo.pirovano@gmail.com>
Co-authored-by: Edoardo Pirovano <6748066+edoardopirovano@users.noreply.github.com>
Co-authored-by: Andrew Eisenberg <aeisenberg@github.com>
Co-authored-by: Henry Mercer <henrymercer@github.com>

* Update changelog and version after v2.1.27

* Update checked-in dependencies

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions@github.com>
Co-authored-by: Chuan-kai Lin <cklin@github.com>
Co-authored-by: Angela P Wen <angelapwen@github.com>
Co-authored-by: GitHub <noreply@github.com>
Co-authored-by: Edoardo Pirovano <edoardo.pirovano@gmail.com>
Co-authored-by: Edoardo Pirovano <6748066+edoardopirovano@users.noreply.github.com>
Co-authored-by: Andrew Eisenberg <aeisenberg@github.com>
Co-authored-by: Henry Mercer <henrymercer@github.com>

.github/check-codescanning-config/action.yml

@@ -0,0 +1,60 @@
+name: Check Code-Scanning Config
+description: |
+    Checks the code scanning configuration file generated by the
+    action to ensure it contains the expected contents
+inputs:
+  languages:
+    required: false
+    description: The languages field passed to the init action.
+
+  packs:
+    required: false
+    description: The packs field passed to the init action.
+
+  queries:
+    required: false
+    description: The queries field passed to the init action.
+
+  config-file-test:
+    required: false
+    description: |
+      The location of the config file to use. If empty,
+      then no config file is used.
+
+  expected-config-file-contents:
+    required: true
+    description: |
+      A JSON string containing the exact contents of the config file.
+
+  tools:
+    required: true
+    description: |
+      The url of codeql to use.
+
+runs:
+  using: composite
+  steps:
+    - uses: ./../action/init
+      with:
+        languages: ${{ inputs.languages }}
+        config-file: ${{ inputs.config-file-test }}
+        queries: ${{ inputs.queries }}
+        packs: ${{ inputs.packs }}
+        tools: ${{ inputs.tools }}
+        db-location: ${{ runner.temp }}/codescanning-config-cli-test
+
+    - name: Install dependencies
+      shell: bash
+      run: npm install --location=global ts-node js-yaml
+
+    - name: Check config
+      working-directory: ${{ github.action_path }}
+      shell: bash
+      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
+
+    - name: Clean up
+      shell: bash
+      if: always()
+      run: |
+        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
+        rm -rf ${{ runner.temp }}/user-config.yaml

.github/check-codescanning-config/index.ts

@@ -0,0 +1,39 @@
+
+import * as core from '@actions/core'
+import * as yaml from 'js-yaml'
+import * as fs from 'fs'
+import * as assert from 'assert'
+
+const actualConfig = loadActualConfig()
+
+const rawExpectedConfig = process.argv[3].trim()
+if (!rawExpectedConfig) {
+  core.info('No expected configuration provided')
+} else {
+  core.startGroup('Expected generated user config')
+  core.info(yaml.dump(JSON.parse(rawExpectedConfig)))
+  core.endGroup()
+}
+
+const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
+
+assert.deepStrictEqual(
+  actualConfig,
+  expectedConfig,
+  'Expected configuration does not match actual configuration'
+);
+
+
+function loadActualConfig() {
+  if (!fs.existsSync(process.argv[2])) {
+    core.info('No configuration file found')
+    return undefined
+  } else {
+    const rawActualConfig = fs.readFileSync(process.argv[2], 'utf8')
+    core.startGroup('Actual generated user config')
+    core.info(rawActualConfig)
+    core.endGroup()
+
+    return yaml.load(rawActualConfig)
+  }
+}

.github/check-sarif/action.yml

@@ -0,0 +1,20 @@
+name: Check SARIF
+description: Checks a SARIF file to see if certain queries were run and others were not run.
+inputs:
+  sarif-file:
+    required: true
+    description: The SARIF file to check
+
+  queries-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should be included in this SARIF file.
+
+  queries-not-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should NOT be included in this SARIF file.
+
+runs:
+  using: node12
+  main: index.js

.github/check-sarif/index.js

@@ -0,0 +1,43 @@
+'use strict'
+
+const core = require('@actions/core')
+const fs = require('fs')
+
+const sarif = JSON.parse(fs.readFileSync(core.getInput('sarif-file'), 'utf8'))
+const rules = sarif.runs[0].tool.extensions.flatMap(ext => ext.rules || [])
+const ruleIds = rules.map(rule => rule.id)
+
+// Check that all the expected queries ran
+const expectedQueriesRun = getQueryIdsInput('queries-run')
+const queriesThatShouldHaveRunButDidNot = expectedQueriesRun.filter(queryId => !ruleIds.includes(queryId))
+
+if (queriesThatShouldHaveRunButDidNot.length > 0) {
+  core.setFailed(`The following queries were expected to run but did not: ${queriesThatShouldHaveRunButDidNot.join(', ')}`)
+}
+
+// Check that all the unexpected queries did not run
+const expectedQueriesNotRun = getQueryIdsInput('queries-not-run')
+
+const queriesThatShouldNotHaveRunButDid = expectedQueriesNotRun.filter(queryId => ruleIds.includes(queryId))
+
+if (queriesThatShouldNotHaveRunButDid.length > 0) {
+  core.setFailed(`The following queries were NOT expected to have run but did: ${queriesThatShouldNotHaveRunButDid.join(', ')}`)
+}
+
+
+core.startGroup('All queries run')
+rules.forEach(rule => {
+  core.info(`${rule.id}: ${(rule.properties && rule.properties.name) || rule.name}`)
+})
+core.endGroup()
+
+core.startGroup('Full SARIF')
+core.info(JSON.stringify(sarif, null, 2))
+core.endGroup()
+
+function getQueryIdsInput(name) {
+  return core.getInput(name)
+    .split(',')
+    .map(q => q.trim())
+    .filter(q => q.length > 0)
+}

.github/query-filter-test/action.yml

@@ -0,0 +1,54 @@
+name: Query Filter Test
+description: Runs a test of query filters using the check SARIF action
+inputs:
+  sarif-file:
+    required: true
+    description: The SARIF file to check
+
+  queries-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should be included in this SARIF file.
+
+  queries-not-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should NOT be included in this SARIF file.
+
+  config-file:
+    required: true
+    description: |
+      The location of the codeql configuration file to use.
+
+  tools:
+    required: true
+    description: |
+      The url of codeql to use.
+
+runs:
+  using: composite
+  steps:
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        config-file: ${{ inputs.config-file }}
+        tools: ${{ inputs.tools }}
+        db-location: ${{ runner.temp }}/query-filter-test
+      env:
+        TEST_MODE: "true"
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+        upload: false
+      env:
+        TEST_MODE: "true"
+    - name: Check SARIF
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file:  ${{ inputs.sarif-file }}
+        queries-run: ${{ inputs.queries-run}}
+        queries-not-run: ${{ inputs.queries-not-run}}
+    - name: Cleanup after test
+      shell: bash
+      run: rm -rf "$RUNNER_TEMP/results" "$RUNNER_TEMP/query-filter-test"

.github/update-release-branch.py

@@ -1,12 +1,9 @@
+import argparse
 import datetime
 from github import Github
-import random
-import requests
-import subprocess
-import sys
 import json
-import datetime
 import os
+import subprocess
 
 EMPTY_CHANGELOG = """# CodeQL Action and CodeQL Runner Changelog
 
@@ -16,21 +13,25 @@ No user facing changes.
 
 """
 
-# The branch being merged from.
-# This is the one that contains day-to-day development work.
-MAIN_BRANCH = 'main'
-# The branch being merged into.
-# This is the release branch that users reference.
-LATEST_RELEASE_BRANCH = 'v1'
+# Value of the mode flag for a v1 release
+V1_MODE = 'v1-release'
+
+# Value of the mode flag for a v2 release
+V2_MODE = 'v2-release'
+
+SOURCE_BRANCH_FOR_MODE = { V1_MODE: 'releases/v2', V2_MODE: 'main' }
+TARGET_BRANCH_FOR_MODE = { V1_MODE: 'releases/v1', V2_MODE: 'releases/v2' }
+
 # Name of the remote
 ORIGIN = 'origin'
 
 # Runs git with the given args and returns the stdout.
-# Raises an error if git does not exit successfully.
-def run_git(*args):
+# Raises an error if git does not exit successfully (unless passed
+# allow_non_zero_exit_code=True).
+def run_git(*args, allow_non_zero_exit_code=False):
   cmd = ['git', *args]
   p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
-  if (p.returncode != 0):
+  if not allow_non_zero_exit_code and p.returncode != 0:
     raise Exception('Call to ' + ' '.join(cmd) + ' exited with code ' + str(p.returncode) + ' stderr:' + p.stderr.decode('ascii'))
   return p.stdout.decode('ascii')
 
@@ -38,8 +39,10 @@ def run_git(*args):
 def branch_exists_on_remote(branch_name):
   return run_git('ls-remote', '--heads', ORIGIN, branch_name).strip() != ''
 
-# Opens a PR from the given branch to the release branch
-def open_pr(repo, all_commits, short_main_sha, branch_name):
+# Opens a PR from the given branch to the target branch
+def open_pr(
+  repo, all_commits, source_branch_short_sha, new_branch_name, source_branch, target_branch,
+  conductor, is_v2_release, labels, conflicted_files):
   # Sort the commits into the pull requests that introduced them,
   # and any commits that don't have a pull request
   pull_requests = []
@@ -61,11 +64,10 @@ def open_pr(repo, all_commits, short_main_sha, branch_name):
 
   # Start constructing the body text
   body = []
-  body.append('Merging ' + short_main_sha + ' into ' + LATEST_RELEASE_BRANCH)
+  body.append('Merging ' + source_branch_short_sha + ' into ' + target_branch)
 
-  conductor = get_conductor(repo, pull_requests, commits_without_pull_requests)
   body.append('')
-  body.append('Conductor for this PR is @' + conductor)
+  body.append(f'Conductor for this PR is @{conductor}.')
 
   # List all PRs merged
   if len(pull_requests) > 0:
@@ -73,50 +75,62 @@ def open_pr(repo, all_commits, short_main_sha, branch_name):
     body.append('Contains the following pull requests:')
     for pr in pull_requests:
       merger = get_merger_of_pr(repo, pr)
-      body.append('- #' + str(pr.number) + ' - ' + pr.title +' (@' + merger + ')')
+      body.append(f'- #{pr.number} (@{merger})')
 
   # List all commits not part of a PR
   if len(commits_without_pull_requests) > 0:
     body.append('')
     body.append('Contains the following commits not from a pull request:')
     for commit in commits_without_pull_requests:
-      body.append('- ' + commit.sha + ' - ' + get_truncated_commit_message(commit) + ' (@' + commit.author.login + ')')
+      author_description = f' (@{commit.author.login})' if commit.author is not None else ''
+      body.append(f'- {commit.sha} - {get_truncated_commit_message(commit)}{author_description}')
 
   body.append('')
-  body.append('Please review the following:')
-  body.append(' - [ ] The CHANGELOG displays the correct version and date.')
-  body.append(' - [ ] The CHANGELOG includes all relevant, user-facing changes since the last release.')
-  body.append(' - [ ] There are no unexpected commits being merged into the ' + LATEST_RELEASE_BRANCH + ' branch.')
-  body.append(' - [ ] The docs team is aware of any documentation changes that need to be released.')
-  body.append(' - [ ] The mergeback PR is merged back into ' + MAIN_BRANCH + ' after this PR is merged.')
+  body.append('Please do the following:')
+  if len(conflicted_files) > 0:
+    body.append(' - [ ] Ensure `package.json` file contains the correct version.')
+    body.append(' - [ ] Add commits to this branch to resolve the merge conflicts ' +
+      'in the following files:')
+    body.extend([f'    - [ ] `{file}`' for file in conflicted_files])
+    body.append(' - [ ] Ensure another maintainer has reviewed the additional commits you added to this ' +
+      'branch to resolve the merge conflicts.')
+  body.append(' - [ ] Ensure the CHANGELOG displays the correct version and date.')
+  body.append(' - [ ] Ensure the CHANGELOG includes all relevant, user-facing changes since the last release.')
+  body.append(' - [ ] Check that there are not any unexpected commits being merged into the ' + target_branch + ' branch.')
+  body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
-  title = 'Merge ' + MAIN_BRANCH + ' into ' + LATEST_RELEASE_BRANCH
+  if not is_v2_release:
+    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
+    body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
+
+  body.append(' - [ ] Approve and merge this PR.')
+
+  if is_v2_release:
+    body.append(' - [ ] Merge the mergeback PR that will automatically be created once this PR is merged.')
+    body.append(' - [ ] Merge the v1 release PR that will automatically be created once this PR is merged.')
+
+  title = 'Merge ' + source_branch + ' into ' + target_branch
 
   # Create the pull request
   # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
   # a maintainer can take the PR out of draft, thereby triggering the PR checks.
-  pr = repo.create_pull(title=title, body='\n'.join(body), head=branch_name, base=LATEST_RELEASE_BRANCH, draft=True)
+  pr = repo.create_pull(title=title, body='\n'.join(body), head=new_branch_name, base=target_branch, draft=True)
+  pr.add_to_labels(*labels)
   print('Created PR #' + str(pr.number))
 
   # Assign the conductor
   pr.add_to_assignees(conductor)
   print('Assigned PR to ' + conductor)
 
-# Gets the person who should be in charge of the mergeback PR
-def get_conductor(repo, pull_requests, other_commits):
-  # If there are any PRs then use whoever merged the last one
-  if len(pull_requests) > 0:
-    return get_merger_of_pr(repo, pull_requests[-1])
-
-  # Otherwise take the author of the latest commit
-  return other_commits[-1].author.login
-
-# Gets a list of the SHAs of all commits that have happened on main
-# since the release branched off.
-# This will not include any commits that exist on the release branch
-# that aren't on main.
-def get_commit_difference(repo):
-  commits = run_git('log', '--pretty=format:%H', ORIGIN + '/' + LATEST_RELEASE_BRANCH + '..' + ORIGIN + '/' + MAIN_BRANCH).strip().split('\n')
+# Gets a list of the SHAs of all commits that have happened on the source branch
+# since the last release to the target branch.
+# This will not include any commits that exist on the target branch
+# that aren't on the source branch.
+def get_commit_difference(repo, source_branch, target_branch):
+  # Passing split nothing means that the empty string splits to nothing: compare `''.split() == []`
+  # to `''.split('\n') == ['']`.
+  commits = run_git('log', '--pretty=format:%H', ORIGIN + '/' + target_branch + '..' + ORIGIN + '/' + source_branch).strip().split()
 
   # Convert to full-fledged commit objects
   commits = [repo.get_commit(c) for c in commits]
@@ -136,7 +150,7 @@ def get_truncated_commit_message(commit):
   else:
     return message
 
-# Converts a commit into the PR that introduced it to the main branch.
+# Converts a commit into the PR that introduced it to the source branch.
 # Returns the PR object, or None if no PR could be found.
 def get_pr_for_commit(repo, commit):
   prs = commit.get_pulls()
@@ -179,29 +193,65 @@ def update_changelog(version):
 
 
 def main():
-  if len(sys.argv) != 3:
-    raise Exception('Usage: update-release.branch.py <github token> <repository nwo>')
-  github_token = sys.argv[1]
-  repository_nwo = sys.argv[2]
+  parser = argparse.ArgumentParser('update-release-branch.py')
 
-  repo = Github(github_token).get_repo(repository_nwo)
+  parser.add_argument(
+    '--github-token',
+    type=str,
+    required=True,
+    help='GitHub token, typically from GitHub Actions.'
+  )
+  parser.add_argument(
+    '--repository-nwo',
+    type=str,
+    required=True,
+    help='The nwo of the repository, for example github/codeql-action.'
+  )
+  parser.add_argument(
+    '--mode',
+    type=str,
+    required=True,
+    choices=[V2_MODE, V1_MODE],
+    help=f"Which release to perform. '{V2_MODE}' uses {SOURCE_BRANCH_FOR_MODE[V2_MODE]} as the source " +
+      f"branch and {TARGET_BRANCH_FOR_MODE[V2_MODE]} as the target branch. " +
+      f"'{V1_MODE}' uses {SOURCE_BRANCH_FOR_MODE[V1_MODE]} as the source branch and " +
+      f"{TARGET_BRANCH_FOR_MODE[V1_MODE]} as the target branch."
+  )
+  parser.add_argument(
+    '--conductor',
+    type=str,
+    required=True,
+    help='The GitHub handle of the person who is conducting the release process.'
+  )
+
+  args = parser.parse_args()
+
+  source_branch = SOURCE_BRANCH_FOR_MODE[args.mode]
+  target_branch = TARGET_BRANCH_FOR_MODE[args.mode]
+
+  repo = Github(args.github_token).get_repo(args.repository_nwo)
   version = get_current_version()
 
+  if args.mode == V1_MODE:
+    # Change the version number to a v1 equivalent
+    version = get_current_version()
+    version = f'1{version[1:]}'
+
   # Print what we intend to go
-  print('Considering difference between ' + MAIN_BRANCH + ' and ' + LATEST_RELEASE_BRANCH)
-  short_main_sha = run_git('rev-parse', '--short', ORIGIN + '/' + MAIN_BRANCH).strip()
-  print('Current head of ' + MAIN_BRANCH + ' is ' + short_main_sha)
+  print('Considering difference between ' + source_branch + ' and ' + target_branch)
+  source_branch_short_sha = run_git('rev-parse', '--short', ORIGIN + '/' + source_branch).strip()
+  print('Current head of ' + source_branch + ' is ' + source_branch_short_sha)
 
   # See if there are any commits to merge in
-  commits = get_commit_difference(repo)
+  commits = get_commit_difference(repo=repo, source_branch=source_branch, target_branch=target_branch)
   if len(commits) == 0:
-    print('No commits to merge from ' + MAIN_BRANCH + ' to ' + LATEST_RELEASE_BRANCH)
+    print('No commits to merge from ' + source_branch + ' to ' + target_branch)
     return
 
   # The branch name is based off of the name of branch being merged into
   # and the SHA of the branch being merged from. Thus if the branch already
   # exists we can assume we don't need to recreate it.
-  new_branch_name = 'update-v' + version + '-' + short_main_sha
+  new_branch_name = 'update-v' + version + '-' + source_branch_short_sha
   print('Branch name is ' + new_branch_name)
 
   # Check if the branch already exists. If so we can abort as this script
@@ -212,19 +262,90 @@ def main():
 
   # Create the new branch and push it to the remote
   print('Creating branch ' + new_branch_name)
-  run_git('checkout', '-b', new_branch_name, ORIGIN + '/' + MAIN_BRANCH)
 
-  print('Updating changelog')
-  update_changelog(version)
+  # The process of creating the v1 release can run into merge conflicts. We commit the unresolved
+  # conflicts so a maintainer can easily resolve them (vs erroring and requiring maintainers to
+  # reconstruct the release manually)
+  conflicted_files = []
 
-  # Create a commit that updates the CHANGELOG
-  run_git('add', 'CHANGELOG.md')
-  run_git('commit', '-m', version)
+  if args.mode == V1_MODE:
+    # If we're performing a backport, start from the target branch
+    print(f'Creating {new_branch_name} from the {ORIGIN}/{target_branch} branch')
+    run_git('checkout', '-b', new_branch_name, f'{ORIGIN}/{target_branch}')
+
+    # Revert the commit that we made as part of the last release that updated the version number and
+    # changelog to refer to 1.x.x variants. This avoids merge conflicts in the changelog and
+    # package.json files when we merge in the v2 branch.
+    # This commit will not exist the first time we release the v1 branch from the v2 branch, so we
+    # use `git log --grep` to conditionally revert the commit.
+    print('Reverting the 1.x.x version number and changelog updates from the last release to avoid conflicts')
+    v1_update_commits = run_git('log', '--grep', '^Update version and changelog for v', '--format=%H').split()
+
+    if len(v1_update_commits) > 0:
+      print(f'  Reverting {v1_update_commits[0]}')
+      # Only revert the newest commit as older ones will already have been reverted in previous
+      # releases.
+      run_git('revert', v1_update_commits[0], '--no-edit')
+
+      # Also revert the "Update checked-in dependencies" commit created by Actions.
+      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
+      print(f'  Reverting {update_dependencies_commit}')
+      run_git('revert', update_dependencies_commit, '--no-edit')
+
+    else:
+      print('  Nothing to revert.')
+
+    print(f'Merging {ORIGIN}/{source_branch} into the release prep branch')
+    # Commit any conflicts (see the comment for `conflicted_files`)
+    run_git('merge', f'{ORIGIN}/{source_branch}', allow_non_zero_exit_code=True)
+    conflicted_files = run_git('diff', '--name-only', '--diff-filter', 'U').splitlines()
+    if len(conflicted_files) > 0:
+      run_git('add', '.')
+      run_git('commit', '--no-edit')
+
+    # Migrate the package version number from a v2 version number to a v1 version number
+    print(f'Setting version number to {version}')
+    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
+    run_git('add', 'package.json', 'package-lock.json')
+
+    # Migrate the changelog notes from v2 version numbers to v1 version numbers
+    print('Migrating changelog notes from v2 to v1')
+    subprocess.check_output(['sed', '-i', 's/^## 2\./## 1./g', 'CHANGELOG.md'])
+
+    # Remove changelog notes from v2 that don't apply to v1
+    subprocess.check_output(['sed', '-i', '/^- \[v2+ only\]/d', 'CHANGELOG.md'])
+
+    # Amend the commit generated by `npm version` to update the CHANGELOG
+    run_git('add', 'CHANGELOG.md')
+    run_git('commit', '-m', f'Update version and changelog for v{version}')
+  else:
+    # If we're performing a standard release, there won't be any new commits on the target branch,
+    # as these will have already been merged back into the source branch. Therefore we can just
+    # start from the source branch.
+    run_git('checkout', '-b', new_branch_name, f'{ORIGIN}/{source_branch}')
+
+    print('Updating changelog')
+    update_changelog(version)
+
+    # Create a commit that updates the CHANGELOG
+    run_git('add', 'CHANGELOG.md')
+    run_git('commit', '-m', f'Update changelog for v{version}')
 
   run_git('push', ORIGIN, new_branch_name)
 
   # Open a PR to update the branch
-  open_pr(repo, commits, short_main_sha, new_branch_name)
+  open_pr(
+    repo,
+    commits,
+    source_branch_short_sha,
+    new_branch_name,
+    source_branch=source_branch,
+    target_branch=target_branch,
+    conductor=args.conductor,
+    is_v2_release=args.mode == V2_MODE,
+    labels=['Update dependencies'] if args.mode == V1_MODE else [],
+    conflicted_files=conflicted_files
+  )
 
 if __name__ == '__main__':
   main()

.github/workflows/__analyze-ref-input.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -65,11 +66,11 @@ jobs:
         - os: windows-2022
           version: nightly-latest
     name: "Analyze: 'ref' and 'sha' from inputs"
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -81,6 +82,8 @@ jobs:
         languages: cpp,csharp,java,javascript,python
         config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
           github.sha }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh

.github/workflows/__autobuild-action.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: PR Check - autobuild-action
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  autobuild-action:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+    name: autobuild-action
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: ./../action/init
+      with:
+        languages: csharp
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - uses: ./../action/autobuild
+      env:
+      # Explicitly disable the CLR tracer.
+        COR_ENABLE_PROFILING: ''
+        COR_PROFILER: ''
+        COR_PROFILER_PATH_64: ''
+        CORECLR_ENABLE_PROFILING: ''
+        CORECLR_PROFILER: ''
+        CORECLR_PROFILER_PATH_64: ''
+    - uses: ./../action/analyze
+      env:
+        TEST_MODE: true
+    - name: Check database
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d csharp ]]; then
+          echo "Did not find a C# database"
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__extractor-ram-threads.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -27,11 +28,11 @@ jobs:
         - os: ubuntu-latest
           version: latest
     name: Extractor ram and threads options test
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -42,6 +43,8 @@ jobs:
         languages: java
         ram: 230
         threads: 1
+      env:
+        TEST_MODE: true
     - name: Assert Results
       shell: bash
       run: |

.github/workflows/__go-custom-queries.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -65,17 +66,17 @@ jobs:
         - os: windows-2022
           version: nightly-latest
     name: 'Go: Custom queries'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
       with:
         version: ${{ matrix.version }}
-    - uses: actions/setup-go@v2
+    - uses: actions/setup-go@v3
       with:
         go-version: ^1.13.1
     - uses: ./../action/init
@@ -83,6 +84,8 @@ jobs:
         languages: go
         config-file: ./.github/codeql/custom-queries.yml
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh
@@ -90,4 +93,5 @@ jobs:
       env:
         TEST_MODE: true
     env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-custom-tracing-autobuild.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -49,23 +50,25 @@ jobs:
         - os: macos-latest
           version: nightly-latest
     name: 'Go: Autobuild custom tracing'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
       with:
         version: ${{ matrix.version }}
-    - uses: actions/setup-go@v2
+    - uses: actions/setup-go@v3
       with:
         go-version: ^1.13.1
     - uses: ./../action/init
       with:
         languages: go
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - uses: ./../action/autobuild
     - uses: ./../action/analyze
       env:
@@ -78,5 +81,6 @@ jobs:
           exit 1
         fi
     env:
-      CODEQL_EXTRACTOR_GO_BUILD_TRACING: 'true'
+      CODEQL_EXTRACTOR_GO_BUILD_TRACING: on
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-custom-tracing.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -65,23 +66,25 @@ jobs:
         - os: windows-2022
           version: nightly-latest
     name: 'Go: Custom tracing'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
       with:
         version: ${{ matrix.version }}
-    - uses: actions/setup-go@v2
+    - uses: actions/setup-go@v3
       with:
         go-version: ^1.13.1
     - uses: ./../action/init
       with:
         languages: go
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: go build main.go
@@ -89,5 +92,5 @@ jobs:
       env:
         TEST_MODE: true
     env:
-      CODEQL_EXTRACTOR_GO_BUILD_TRACING: 'true'
+      CODEQL_EXTRACTOR_GO_BUILD_TRACING: on
       INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-reconciled-tracing-autobuilder.yml

@@ -3,7 +3,7 @@
 #     pip install ruamel.yaml && python3 sync.py
 # to regenerate this file.
 
-name: PR Check - Debug artifact upload
+name: 'PR Check - Go: Reconciled tracing with autobuilder'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -20,7 +21,7 @@ on:
     - ready_for_review
   workflow_dispatch: {}
 jobs:
-  debug-artifacts:
+  go-reconciled-tracing-autobuilder:
     strategy:
       matrix:
         include:
@@ -48,48 +49,43 @@ jobs:
           version: nightly-latest
         - os: macos-latest
           version: nightly-latest
-    name: Debug artifact upload
-    timeout-minutes: 30
+    name: 'Go: Reconciled tracing with autobuilder'
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
       with:
         version: ${{ matrix.version }}
+    - uses: actions/setup-go@v3
+      with:
+        go-version: ^1.13.1
     - uses: ./../action/init
       with:
+        languages: go
         tools: ${{ steps.prepare-test.outputs.tools-url }}
-        debug: true
-        debug-artifact-name: my-debug-artifacts
-        debug-database-name: my-db
-    - name: Build code
-      shell: bash
-      run: ./build.sh
+      env:
+        TEST_MODE: true
+    - uses: ./../action/autobuild
     - uses: ./../action/analyze
-      id: analysis
-    - uses: actions/download-artifact@v2
-      with:
-        name: my-debug-artifacts-${{ matrix.os }}-${{ matrix.version }}
+      env:
+        TEST_MODE: true
     - shell: bash
       run: |
-        LANGUAGES="cpp csharp go java javascript python"
-        for language in $LANGUAGES; do
-          echo "Checking $language"
-          if [[ ! -f "$language.sarif" ]] ; then
-            echo "Missing a SARIF file for $language"
-            exit 1
-          fi
-          if [[ ! -f "my-db-$language.zip" ]] ; then
-            echo "Missing a database bundle for $language"
-            exit 1
-          fi
-          if [[ ! -d "$language/log" ]] ; then
-            echo "Missing logs for $language"
-            exit 1
-          fi
-        done
+        if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+          echo "Expected the Go autobuilder to be run, but the" \
+            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+          exit 1
+        fi
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
     env:
+      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-reconciled-tracing-custom-build-steps.yml

@@ -0,0 +1,112 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: 'PR Check - Go: Reconciled tracing with custom build steps'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  go-reconciled-tracing-custom-build-steps:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20210308
+        - os: macos-latest
+          version: stable-20210308
+        - os: windows-2019
+          version: stable-20210308
+        - os: ubuntu-latest
+          version: stable-20210319
+        - os: macos-latest
+          version: stable-20210319
+        - os: windows-2019
+          version: stable-20210319
+        - os: ubuntu-latest
+          version: stable-20210809
+        - os: macos-latest
+          version: stable-20210809
+        - os: windows-2019
+          version: stable-20210809
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
+    name: 'Go: Reconciled tracing with custom build steps'
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: actions/setup-go@v3
+      with:
+        go-version: ^1.13.1
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - name: Build code
+      shell: bash
+      run: go build main.go
+    - uses: ./../action/analyze
+      env:
+        TEST_MODE: true
+    - shell: bash
+      run: |
+        # Once we start running Bash 4.2 in all environments, we can replace the
+        # `! -z` flag with the more elegant `-v` which confirms that the variable
+        # is actually unset and not potentially set to a blank value.
+        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+          echo "Expected the Go autobuilder not to be run, but the" \
+            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+          exit 1
+        fi
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
+    env:
+  # Enable reconciled Go tracing beta functionality
+      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-reconciled-tracing-legacy-workflow.yml

@@ -0,0 +1,86 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: 'PR Check - Go: Reconciled tracing with legacy workflow'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  go-reconciled-tracing-legacy-workflow:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20210308
+        - os: macos-latest
+          version: stable-20210308
+        - os: ubuntu-latest
+          version: stable-20210319
+        - os: macos-latest
+          version: stable-20210319
+        - os: ubuntu-latest
+          version: stable-20210809
+        - os: macos-latest
+          version: stable-20210809
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+    name: 'Go: Reconciled tracing with legacy workflow'
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: actions/setup-go@v3
+      with:
+        go-version: ^1.13.1
+    - uses: ./../action/init
+      with:
+        languages: go
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - uses: ./../action/analyze
+      env:
+        TEST_MODE: true
+    - shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d go ]]; then
+          echo "Did not find a Go database"
+          exit 1
+        fi
+    env:
+  # Enable reconciled Go tracing beta functionality
+      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__init-with-registries.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Download using registries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  init-with-registries:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
+    name: 'Packaging: Download using registries'
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - name: Init with registries
+      uses: ./../action/init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+        config-file: ./.github/codeql/codeql-config-registries.yml
+        languages: javascript
+        registries: |
+          - url: "https://ghcr.io/v2/"
+            packages: "*/*"
+            token: "${{ secrets.GITHUB_TOKEN }}"
+
+      env:
+        TEST_MODE: true
+    - name: Verify packages installed
+      shell: bash
+      run: |
+        PRIVATE_PACK="$HOME/.codeql/packages/dsp-testing/private-pack"
+        CODEQL_PACK1="$HOME/.codeql/packages/dsp-testing/codeql-pack1"
+
+        if [[ -d $PRIVATE_PACK ]]
+        then
+            echo "$PRIVATE_PACK was installed."
+        else
+            echo "::error $PRIVATE_PACK pack was not installed."
+            exit 1
+        fi
+
+        if [[ -d $CODEQL_PACK1 ]]
+        then
+            echo "$CODEQL_PACK1 was installed."
+        else
+            echo "::error $CODEQL_PACK1 pack was not installed."
+            exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__javascript-source-root.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -31,11 +32,11 @@ jobs:
         - os: ubuntu-latest
           version: nightly-latest
     name: Custom source root
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -51,6 +52,8 @@ jobs:
         languages: javascript
         source-root: ../new-source-root
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - uses: ./../action/analyze
       with:
         skip-queries: true

.github/workflows/__ml-powered-queries.yml

@@ -0,0 +1,140 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: PR Check - ML-powered queries
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  ml-powered-queries:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20220120
+        - os: macos-latest
+          version: stable-20220120
+        - os: windows-latest
+          version: stable-20220120
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-latest
+          version: cached
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-latest
+          version: nightly-latest
+    name: ML-powered queries
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        queries: security-extended
+        source-root: ./../action/tests/ml-powered-queries-repo
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+      env:
+        TEST_MODE: true
+
+    - name: Upload SARIF
+      uses: actions/upload-artifact@v3
+      with:
+        name: ml-powered-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+        path: ${{ runner.temp }}/results/javascript.sarif
+        retention-days: 7
+
+    - name: Check sarif
+      uses: ./../action/.github/check-sarif
+      if: matrix.os != 'windows-latest' || matrix.version == 'latest' || matrix.version
+        == 'nightly-latest'
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/ml-powered/nosql-injection,js/ml-powered/path-injection,js/ml-powered/sql-injection,js/ml-powered/xss
+        queries-not-run: foo,bar
+
+    - name: Check results
+    # Running ML-powered queries on Windows requires CodeQL CLI 2.9.0+. We don't run these checks
+    # against Windows and `cached` while CodeQL CLI 2.9.0 makes its way into `cached` to avoid the
+    # test starting to fail when the cached CodeQL Bundle gets updated. Once the CodeQL Bundle
+    # containing CodeQL CLI 2.9.0 has been fully released, we can drop this line and start running
+    # these checks on Windows and `cached`.
+      if: matrix.os != 'windows-latest' || matrix.version != 'cached'
+      env:
+      # Running on Windows requires CodeQL CLI 2.9.0+, which has so far only made it to 'latest'.
+        SHOULD_RUN_ML_POWERED_QUERIES: ${{ matrix.os != 'windows-latest' || matrix.version
+          == 'latest' || matrix.version == 'nightly-latest' }}
+      shell: bash
+      run: |
+        echo "Expecting ML-powered queries to be run: ${SHOULD_RUN_ML_POWERED_QUERIES}"
+
+        cd "$RUNNER_TEMP/results"
+        # We should run at least the ML-powered queries in `expected_rules`.
+        expected_rules="js/ml-powered/nosql-injection js/ml-powered/path-injection js/ml-powered/sql-injection js/ml-powered/xss"
+
+        for rule in ${expected_rules}; do
+          found_rule=$(jq --arg rule "${rule}" '[.runs[0].tool.extensions[].rules | select(. != null) |
+            flatten | .[].id] | any(. == $rule)' javascript.sarif)
+          echo "Did find rule '${rule}': ${found_rule}"
+          if [[ "${found_rule}" != "true" && "${SHOULD_RUN_ML_POWERED_QUERIES}" == "true" ]]; then
+            echo "Expected SARIF output to contain rule '${rule}', but found no such rule."
+            exit 1
+          elif [[ "${found_rule}" == "true" && "${SHOULD_RUN_ML_POWERED_QUERIES}" != "true" ]]; then
+            echo "Found rule '${rule}' in the SARIF output which shouldn't have been part of the analysis."
+            exit 1
+          fi
+        done
+
+        # We should have at least one alert from an ML-powered query.
+        num_alerts=$(jq '[.runs[0].results[] |
+          select(.properties.score != null and (.rule.id | startswith("js/ml-powered/")))] | length' \
+          javascript.sarif)
+        echo "Found ${num_alerts} alerts from ML-powered queries.";
+        if [[ "${num_alerts}" -eq 0 && "${SHOULD_RUN_ML_POWERED_QUERIES}" == "true" ]]; then
+          echo "Expected to find at least one alert from an ML-powered query but found ${num_alerts}."
+          exit 1
+        elif [[ "${num_alerts}" -ne 0 && "${SHOULD_RUN_ML_POWERED_QUERIES}" != "true" ]]; then
+          echo "Expected not to find any alerts from an ML-powered query but found ${num_alerts}."
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__multi-language-autodetect.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -49,11 +50,11 @@ jobs:
         - os: macos-latest
           version: nightly-latest
     name: Multi-language repository
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -63,6 +64,8 @@ jobs:
       with:
         db-location: ${{ runner.temp }}/customDbLocation
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -0,0 +1,102 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input passed to the CLI'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  packaging-codescanning-config-inputs-js:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
+    name: 'Packaging: Config and input passed to the CLI'
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: ./../action/init
+      with:
+        config-file: .github/codeql/codeql-config-packaging3.yml
+        packs: +dsp-testing/codeql-pack1@1.0.0
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+      env:
+        TEST_MODE: true
+
+    - name: Check results
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
+    - name: Assert Results
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/results"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+        echo "Found matching rules '$RULES'"
+        if [ "$RULES" != "$EXPECTED_RULES" ]; then
+          echo "Did not match expected rules '$EXPECTED_RULES'."
+          exit 1
+        fi
+    env:
+      CODEQL_PASS_CONFIG_TO_CLI: true
+
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -25,15 +26,33 @@ jobs:
       matrix:
         include:
         - os: ubuntu-latest
-          version: nightly-20210831
+          version: latest
         - os: macos-latest
-          version: nightly-20210831
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
     name: 'Packaging: Config and input'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -42,9 +61,11 @@ jobs:
     - uses: ./../action/init
       with:
         config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +dsp-testing/codeql-pack1@0.1.0
+        packs: +dsp-testing/codeql-pack1@1.0.0
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh
@@ -53,15 +74,23 @@ jobs:
         output: ${{ runner.temp }}/results
       env:
         TEST_MODE: true
+
+    - name: Check results
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
     - name: Assert Results
       shell: bash
       run: |
         cd "$RUNNER_TEMP/results"
-        # We should have 3 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/two-block"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
         # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n" " " | xargs)"
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
         echo "Found matching rules '$RULES'"
         if [ "$RULES" != "$EXPECTED_RULES" ]; then
           echo "Did not match expected rules '$EXPECTED_RULES'."

.github/workflows/__packaging-config-js.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -25,15 +26,33 @@ jobs:
       matrix:
         include:
         - os: ubuntu-latest
-          version: nightly-20210831
+          version: latest
         - os: macos-latest
-          version: nightly-20210831
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
     name: 'Packaging: Config file'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -44,6 +63,8 @@ jobs:
         config-file: .github/codeql/codeql-config-packaging.yml
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh
@@ -52,15 +73,23 @@ jobs:
         output: ${{ runner.temp }}/results
       env:
         TEST_MODE: true
+
+    - name: Check results
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
     - name: Assert Results
       shell: bash
       run: |
         cd "$RUNNER_TEMP/results"
-        # We should have 3 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/two-block"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
         # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n" " " | xargs)"
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
         echo "Found matching rules '$RULES'"
         if [ "$RULES" != "$EXPECTED_RULES" ]; then
           echo "Did not match expected rules '$EXPECTED_RULES'."

.github/workflows/__packaging-inputs-js.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -25,15 +26,33 @@ jobs:
       matrix:
         include:
         - os: ubuntu-latest
-          version: nightly-20210831
+          version: latest
         - os: macos-latest
-          version: nightly-20210831
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
     name: 'Packaging: Action input'
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -43,8 +62,10 @@ jobs:
       with:
         config-file: .github/codeql/codeql-config-packaging2.yml
         languages: javascript
-        packs: dsp-testing/codeql-pack1@0.1.0, dsp-testing/codeql-pack2
+        packs: dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2, dsp-testing/codeql-pack3:other-query.ql
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh
@@ -53,15 +74,23 @@ jobs:
         output: ${{ runner.temp }}/results
       env:
         TEST_MODE: true
+
+    - name: Check results
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-not-run: foo,bar
+
     - name: Assert Results
       shell: bash
       run: |
         cd "$RUNNER_TEMP/results"
-        # We should have 3 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/two-block"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
         # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n" " " | xargs)"
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
         echo "Found matching rules '$RULES'"
         if [ "$RULES" != "$EXPECTED_RULES" ]; then
           echo "Did not match expected rules '$EXPECTED_RULES'."

.github/workflows/__remote-config.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -65,11 +66,11 @@ jobs:
         - os: windows-2022
           version: nightly-latest
     name: Remote config file
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -81,6 +82,8 @@ jobs:
         languages: cpp,csharp,java,javascript,python
         config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
           github.sha }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh

.github/workflows/__rubocop-multi-language.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -37,11 +38,11 @@ jobs:
         - os: ubuntu-latest
           version: nightly-latest
     name: RuboCop multi-language
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test

.github/workflows/__split-workflow.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -25,15 +26,23 @@ jobs:
       matrix:
         include:
         - os: ubuntu-latest
-          version: nightly-20210831
+          version: latest
         - os: macos-latest
-          version: nightly-20210831
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
     name: Split workflow
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -42,9 +51,11 @@ jobs:
     - uses: ./../action/init
       with:
         config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +dsp-testing/codeql-pack1@0.1.0
+        packs: +dsp-testing/codeql-pack1@1.0.0
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh
@@ -54,6 +65,7 @@ jobs:
         output: ${{ runner.temp }}/results
       env:
         TEST_MODE: true
+
     - name: Assert No Results
       shell: bash
       run: |
@@ -71,11 +83,11 @@ jobs:
       shell: bash
       run: |
         cd "$RUNNER_TEMP/results"
-        # We should have 3 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/two-block"
+        # We should have 4 hits from these rules
+        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
         # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n" " " | xargs)"
+        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
         echo "Found matching rules '$RULES'"
         if [ "$RULES" != "$EXPECTED_RULES" ]; then
           echo "Did not match expected rules '$EXPECTED_RULES'."

.github/workflows/__test-autobuild-working-dir.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  test-autobuild-working-dir:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+    name: Autobuild working directory
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - name: Test setup
+      shell: bash
+      run: |
+        # Make sure that Gradle build succeeds in autobuild-dir ...
+        cp -a ../action/tests/java-repo autobuild-dir
+        # ... and fails if attempted in the current directory
+        echo > build.gradle
+    - uses: ./../action/init
+      with:
+        languages: java
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - uses: ./../action/autobuild
+      with:
+        working-directory: autobuild-dir
+    - uses: ./../action/analyze
+      env:
+        TEST_MODE: true
+    - name: Check database
+      shell: bash
+      run: |
+        cd "$RUNNER_TEMP/codeql_databases"
+        if [[ ! -d java ]]; then
+          echo "Did not find a Java database"
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__test-local-codeql.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -27,11 +28,11 @@ jobs:
         - os: ubuntu-latest
           version: nightly-latest
     name: Local CodeQL bundle
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -46,6 +47,8 @@ jobs:
     - uses: ./../action/init
       with:
         tools: ./codeql-bundle.tar.gz
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh

.github/workflows/__test-proxy.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -27,11 +28,11 @@ jobs:
         - os: ubuntu-latest
           version: latest
     name: Proxy test
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -41,6 +42,8 @@ jobs:
       with:
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - uses: ./../action/analyze
       env:
         TEST_MODE: true

.github/workflows/__test-ruby.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -37,11 +38,11 @@ jobs:
         - os: macos-latest
           version: nightly-latest
     name: Ruby analysis
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -51,6 +52,8 @@ jobs:
       with:
         languages: ruby
         tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
     - uses: ./../action/analyze
       id: analysis
       env:

.github/workflows/__unset-environment.yml

@@ -1,94 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - Test unsetting environment variables
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - v1
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  unset-environment:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-    name: Test unsetting environment variables
-    timeout-minutes: 30
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v2
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
-    - uses: ./../action/analyze
-      id: analysis
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
-        if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for CPP, or created it in the wrong location."
-          exit 1
-        fi
-        CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
-        if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for C Sharp, or created it in the wrong location."
-          exit 1
-        fi
-        GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
-        if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Go, or created it in the wrong location."
-          exit 1
-        fi
-        JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
-        if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Java, or created it in the wrong location."
-          exit 1
-        fi
-        JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
-        if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Javascript, or created it in the wrong location."
-          exit 1
-        fi
-        PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
-        if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Python, or created it in the wrong location."
-          exit 1
-        fi
-    env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__upload-ref-sha-input.yml

@@ -11,7 +11,8 @@ on:
   push:
     branches:
     - main
-    - v1
+    - releases/v1
+    - releases/v2
   pull_request:
     types:
     - opened
@@ -65,11 +66,11 @@ jobs:
         - os: windows-2022
           version: nightly-latest
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - name: Prepare test
       id: prepare-test
       uses: ./.github/prepare-test
@@ -81,6 +82,8 @@ jobs:
         languages: cpp,csharp,java,javascript,python
         config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
           github.sha }}
+      env:
+        TEST_MODE: true
     - name: Build code
       shell: bash
       run: ./build.sh

.github/workflows/__with-checkout-path.yml

@@ -0,0 +1,148 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pip install ruamel.yaml && python3 sync.py
+# to regenerate this file.
+
+name: PR Check - Use a custom `checkout_path`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  with-checkout-path:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20210308
+        - os: macos-latest
+          version: stable-20210308
+        - os: windows-2019
+          version: stable-20210308
+        - os: ubuntu-latest
+          version: stable-20210319
+        - os: macos-latest
+          version: stable-20210319
+        - os: windows-2019
+          version: stable-20210319
+        - os: ubuntu-latest
+          version: stable-20210809
+        - os: macos-latest
+          version: stable-20210809
+        - os: windows-2019
+          version: stable-20210809
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: windows-2019
+          version: cached
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: windows-2019
+          version: latest
+        - os: windows-2022
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+        - os: windows-2019
+          version: nightly-latest
+        - os: windows-2022
+          version: nightly-latest
+    name: Use a custom `checkout_path`
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: actions/checkout@v3
+      with:
+        ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        path: x/y/z/some-path
+    - uses: ./../action/init
+      with:
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      # it's enough to test one compiled language and one interpreted language
+        languages: csharp,javascript
+        source-path: x/y/z/some-path/tests/multi-language-repo
+        debug: true
+      env:
+        TEST_MODE: true
+    - name: Build code (non-windows)
+      shell: bash
+      if: ${{ runner.os != 'Windows' }}
+      run: |
+        $CODEQL_RUNNER x/y/z/some-path/tests/multi-language-repo/build.sh
+    - name: Build code (windows)
+      shell: bash
+      if: ${{ runner.os == 'Windows' }}
+      run: |
+        x/y/z/some-path/tests/multi-language-repo/build.sh
+    - uses: ./../action/analyze
+      with:
+        checkout_path: x/y/z/some-path/tests/multi-language-repo
+        ref: v1.1.0
+        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        upload: false
+      env:
+        TEST_MODE: true
+
+    - uses: ./../action/upload-sarif
+      with:
+        ref: v1.1.0
+        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+        checkout_path: x/y/z/some-path/tests/multi-language-repo
+      env:
+        TEST_MODE: true
+
+    - name: Verify SARIF after upload
+      shell: bash
+      run: |
+        EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+        EXPECTED_REF="v1.1.0"
+        EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+
+        ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+        ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+        ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+
+        if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+          echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
+
+        if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+          echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
+
+        if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+          echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+          echo "$RUNNER_TEMP/payload.json"
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/check-expected-release-files.yml

@@ -15,7 +15,7 @@ jobs:
 
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -2,9 +2,9 @@ name: "CodeQL action"
 
 on:
   push:
-    branches: [main, v1]
+    branches: [main, releases/v1, releases/v2]
   pull_request:
-    branches: [main, v1]
+    branches: [main, releases/v1, releases/v2]
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
@@ -20,7 +20,7 @@ jobs:
       security-events: write
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
     - name: Init with default CodeQL bundle from the VM image
       id: init-default
       uses: ./init
@@ -75,7 +75,7 @@ jobs:
       security-events: write
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
     - uses: ./init
       id: init
       with:

.github/workflows/codescanning-config-cli.yml

@@ -0,0 +1,220 @@
+# Tests that the generated code scanning config file contains the expected contents
+
+name: Code-Scanning config CLI tests
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  CODEQL_PASS_CONFIG_TO_CLI: true
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+
+jobs:
+  code-scanning-config-tests:
+    continue-on-error: true
+
+    strategy:
+      fail-fast: true
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: latest
+        - os: macos-latest
+          version: latest
+        - os: ubuntu-latest
+          version: cached
+        - os: macos-latest
+          version: cached
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+
+    # Code-Scanning config not created because environment variable is not set
+    name: Code Scanning Configuration tests
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+
+    - name: Empty file
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: "{}"
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Packs from input
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        packs: dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Packs from input with +
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        packs: + dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries from input
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }]
+          }
+        languages: javascript
+        queries: ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries from input with +
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }]
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from input with +
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }],
+            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: + dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }],
+            "packs": {
+              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+            }
+          }
+        languages: javascript
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config overriden by input
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }],
+            "packs": ["codeql/javascript-queries"]
+          }
+        languages: javascript
+        queries: ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: codeql/javascript-queries
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config merging with input
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
+            "packs": {
+              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2", "codeql/javascript-queries" ]
+            }
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: + codeql/javascript-queries
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Multi-language packs from config
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": {
+              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ],
+              "ruby": ["codeql/ruby-queries"]
+            },
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
+            ]
+          }
+        languages: javascript,ruby
+        config-file-test: .github/codeql/multi-language-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Other config properties
+      if: success() || failure()
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "name": "Config using all properties",
+            "packs": ["codeql/javascript-queries" ],
+            "disable-default-queries": true,
+            "paths-ignore": ["xxx"],
+            "paths": ["yyy"]
+          }
+        languages: javascript
+        packs: + codeql/javascript-queries
+        config-file-test: .github/codeql/other-config-properties.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Config not generated when env var is not set
+      if: success() || failure()
+      env:
+        CODEQL_PASS_CONFIG_TO_CLI: false
+      uses: ./../action/.github/check-codescanning-config
+      with:
+        expected-config-file-contents: ""
+        languages: javascript
+        packs: + codeql/javascript-queries
+        config-file-test: .github/codeql/other-config-properties.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/debug-artifacts-failure.yml

@@ -0,0 +1,90 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v3
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/prepare-test
+        with:
+          version: latest
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+        env:
+          TEST_MODE: true
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis  
+        with:
+          expect-error: true
+          ram: 1
+        env:
+          TEST_MODE: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for os in $OPERATING_SYSTEMS; do
+            pushd "./my-debug-artifacts-$os"
+            echo "Artifacts from run on $os:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+                echo "Missing a partial database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "log" ]] ; then
+                echo "Missing database initialization logs"
+                exit 1
+              fi
+              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/debug-artifacts.yml

@@ -0,0 +1,87 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        version: [stable-20210308, stable-20210319, stable-20210809, cached, latest, nightly-latest]
+    name: Upload debug artifacts
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v3
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+        env:
+          TEST_MODE: true
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis  
+        env:
+          TEST_MODE: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
+          VERSIONS="stable-20210308 stable-20210319 stable-20210809 cached latest nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for os in $OPERATING_SYSTEMS; do
+            for version in $VERSIONS; do
+              pushd "./my-debug-artifacts-$os-$version"
+              echo "Artifacts from version $version on $os:"
+              for language in $LANGUAGES; do
+                echo "- Checking $language"
+                if [[ ! -f "$language.sarif" ]] ; then
+                  echo "Missing a SARIF file for $language"
+                  exit 1
+                fi
+                if [[ ! -f "my-db-$language.zip" ]] ; then
+                  echo "Missing a database bundle for $language"
+                  exit 1
+                fi
+                if [[ ! -d "$language/log" ]] ; then
+                  echo "Missing logs for $language"
+                  exit 1
+                fi
+              done
+              popd
+            done
+          done
+        env:
+          INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,49 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: latest
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+        upload: false
+      env:
+        TEST_MODE: true
+
+    - name: Check Sarif
+      uses: ./../action/.github/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

.github/workflows/post-release-mergeback.yml

@@ -1,7 +1,8 @@
-# This workflow runs after a release of the action.
-# It merges any changes from the release back into the
-# main branch. Typically, this is just a single commit
-# that updates the changelog.
+# This workflow runs after a release of the action. For v2 releases, it merges any changes from the
+# release back into the main branch. Typically, this is just a single commit that updates the
+# changelog. For v2 and v1 releases, it then (a) tags the merge commit on the release branch that
+# represents the new release with an `vx.y.z` tag and (b) updates the `vx` tag to refer to this
+# commit.
 name: Tag release and merge back
 
 on:
@@ -14,7 +15,8 @@ on:
 
   push:
     branches:
-      - v1
+      - releases/v1
+      - releases/v2
 
 jobs:
   merge-back:
@@ -25,13 +27,16 @@ jobs:
       HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
 
     steps:
-      - name: Dump GitHub Event context
-        env:
-          GITHUB_EVENT_CONTEXT: "${{ toJson(github.event) }}"
-        run: echo "$GITHUB_EVENT_CONTEXT"
+      - name: Dump environment
+        run: env
 
-      - uses: actions/checkout@v2
-      - uses: actions/setup-node@v2
+      - name: Dump GitHub context
+        env:
+          GITHUB_CONTEXT: '${{ toJson(github) }}'
+        run: echo "${GITHUB_CONTEXT}"
+
+      - uses: actions/checkout@v3
+      - uses: actions/setup-node@v3
 
       - name: Update git config
         run: |
@@ -42,25 +47,25 @@ jobs:
         id: getVersion
         run: |
           VERSION="v$(jq '.version' -r 'package.json')"
-          SHORT_SHA="${GITHUB_SHA:0:8}"
-          echo "::set-output name=version::$VERSION"
-          NEW_BRANCH="mergeback/${VERSION}-to-${BASE_BRANCH}-${SHORT_SHA}"
-          echo "::set-output name=newBranch::$NEW_BRANCH"
+          echo "::set-output name=version::${VERSION}"
+          short_sha="${GITHUB_SHA:0:8}"
+          NEW_BRANCH="mergeback/${VERSION}-to-${BASE_BRANCH}-${short_sha}"
+          echo "::set-output name=newBranch::${NEW_BRANCH}"
 
 
       - name: Dump branches
         env:
           NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
         run: |
-          echo "BASE_BRANCH $BASE_BRANCH"
-          echo "HEAD_BRANCH $HEAD_BRANCH"
-          echo "NEW_BRANCH $NEW_BRANCH"
+          echo "BASE_BRANCH ${BASE_BRANCH}"
+          echo "HEAD_BRANCH ${HEAD_BRANCH}"
+          echo "NEW_BRANCH ${NEW_BRANCH}"
 
       - name: Create mergeback branch
         env:
           NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
         run: |
-          git checkout -b "$NEW_BRANCH"
+          git checkout -b "${NEW_BRANCH}"
 
       - name: Check for tag
         id: check
@@ -68,13 +73,13 @@ jobs:
           VERSION: "${{ steps.getVersion.outputs.version }}"
         run: |
           set +e # don't fail on an errored command
-          git ls-remote --tags origin | grep "$VERSION"
-          EXISTS="$?"
-          if [ "$EXISTS" -eq 0 ]; then
-            echo "Tag $TAG exists. Not going to re-release."
+          git ls-remote --tags origin | grep "${VERSION}"
+          exists="$?"
+          if [ "${exists}" -eq 0 ]; then
+            echo "Tag ${VERSION} exists. Not going to re-release."
             echo "::set-output name=exists::true"
           else
-            echo "Tag $TAG does not exist yet."
+            echo "Tag ${VERSION} does not exist yet."
           fi
 
       # we didn't tag the release during the update-release-branch workflow because the
@@ -85,35 +90,59 @@ jobs:
         env:
           VERSION: ${{ steps.getVersion.outputs.version }}
         run: |
-          git tag -a "$VERSION" -m "$VERSION"
-          git fetch --unshallow  # unshallow the repo in order to allow pushes
-          git push origin --follow-tags "$VERSION"
+          # Unshallow the repo in order to allow pushes
+          git fetch --unshallow
+          # Create the `vx.y.z` tag
+          git tag --annotate "${VERSION}" --message "${VERSION}"
+          # Update the `vx` tag
+          major_version_tag=$(cut -d '.' -f1 <<< "${VERSION}")
+          # Use `--force` to overwrite the major version tag
+          git tag --annotate "${major_version_tag}" --message "${major_version_tag}" --force
+          # Push the tags, using:
+          # - `--atomic` to make sure we either update both tags or neither (an intermediate state,
+          #   e.g. where we update the v2.x.y tag on the remote but not the v2 tag, could result in
+          #   unwanted Dependabot updates, e.g. from v2 to v2.x.y)
+          # - `--force` since we're overwriting the `vx` tag
+          git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
 
       - name: Create mergeback branch
-        if: steps.check.outputs.exists != 'true'
+        if: steps.check.outputs.exists != 'true' && contains(github.ref, 'releases/v2')
         env:
           VERSION: "${{ steps.getVersion.outputs.version }}"
           NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
           GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
         run: |
           set -exu
-          PR_TITLE="Mergeback $VERSION $HEAD_BRANCH into $BASE_BRANCH"
-          PR_BODY="Updates version and changelog."
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
+
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR.
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
 
           # Update the changelog
           perl -i -pe 's/^/## \[UNRELEASED\]\n\nNo user facing changes.\n\n/ if($.==3)' CHANGELOG.md
           git add .
-          git commit -m "Update changelog and version after $VERSION"
-          npm version patch
+          git commit -m "Update changelog and version after ${VERSION}"
 
-          git push origin "$NEW_BRANCH"
+          git push origin "${NEW_BRANCH}"
 
           # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
           # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
           gh pr create \
-            --head "$NEW_BRANCH" \
-            --base "$BASE_BRANCH" \
-            --title "$PR_TITLE" \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
             --label "Update dependencies" \
-            --body "$PR_BODY" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
             --draft

.github/workflows/pr-checks.yml

@@ -1,8 +1,8 @@
-name: PR Checks (Basic Checks and Runner)
+name: PR Checks
 
 on:
   push:
-    branches: [main, v1]
+    branches: [main, releases/v1, releases/v2]
   pull_request:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
@@ -10,50 +10,95 @@ on:
   workflow_dispatch:
 
 jobs:
-  lint-js:
-    name: Lint
+  check-js:
+    name: Check JS
     runs-on: ubuntu-latest
-    timeout-minutes: 30
+    timeout-minutes: 45
+
+    strategy:
+      fail-fast: true
+      matrix:
+        node-types-version: [12.12, current]
 
     steps:
-      - uses: actions/checkout@v2
-      - name: Run Lint
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Lint
         run: npm run-script lint
 
-  check-js:
-    runs-on: ubuntu-latest
-    timeout-minutes: 30
+      - name: Update version of @types/node
+        if: matrix.node-types-version != 'current'
+        env:
+          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
+        run: |
+          # Export `NODE_TYPES_VERSION` so it's available to jq
+          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
+          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
+          echo "${contents}" > package.json
+          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
+          # However we're not checking in the updated lockfile here, so it's fine to run
+          # `npm install` on Linux.
+          npm install
+
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "github-actions@github.com"
+            git config --global user.name "github-actions[bot]"
+            # The period in `git add --all .` ensures that we stage deleted files too.
+            git add --all .
+            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
+          fi
 
-    steps:
-      - uses: actions/checkout@v2
       - name: Check generated JS
         run: .github/workflows/script/check-js.sh
 
   check-node-modules:
     name: Check modules up to date
     runs-on: macos-latest
-    timeout-minutes: 30
+    timeout-minutes: 45
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - name: Check node modules up to date
         run: .github/workflows/script/check-node-modules.sh
 
-  verify-pr-checks:
-    name: Verify PR checks up to date
+  check-file-contents:
+    name: Check file contents
     runs-on: ubuntu-latest
-    timeout-minutes: 30
+    timeout-minutes: 45
 
     steps:
-      - uses: actions/checkout@v2
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      # Checks for any conflict markers created by git. This check is primarily intended to validate that
+      # any merge conflicts in the v2 -> v1 backport PR are fixed before the PR is merged.
+      - name: Check for merge conflicts
+        run: |
+          # Use `|| true` since grep returns exit code 1 if there are no matches, and we don't want
+          # this to fail the workflow.
+          FILES_WITH_CONFLICTS=$(grep --extended-regexp --ignore-case --line-number --recursive \
+            '^(<<<<<<<|>>>>>>>)' . || true)
+          if [[ "${FILES_WITH_CONFLICTS}" ]]; then
+            echo "Fail: Found merge conflict markers in the following files:"
+            echo ""
+            echo "${FILES_WITH_CONFLICTS}"
+            exit 1
+          else
+            echo "Success: Found no merge conflict markers."
+          fi
+
       - name: Set up Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v3
         with:
           python-version: 3.8
+
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
           pip install ruamel.yaml
+
+      # Ensure the generated PR check workflows are up to date.
       - name: Verify PR checks up to date
         run: .github/workflows/script/verify-pr-checks.sh
 
@@ -62,393 +107,15 @@ jobs:
     needs: [check-js, check-node-modules]
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest]
+        os: [ubuntu-latest, macos-latest, windows-latest]
     runs-on: ${{ matrix.os }}
-    timeout-minutes: 30
+    timeout-minutes: 45
 
     steps:
-      - uses: actions/checkout@v2
-      - name: npm run-script test
-        run: npm run-script test
-
-  runner-analyze-javascript-ubuntu:
-    name: Runner ubuntu JS analyze
-    needs: [check-js, check-node-modules]
-    timeout-minutes: 30
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
+      - uses: actions/checkout@v3
+      - name: npm test
         run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          # Pass --config-file here, but not for other jobs in this workflow.
-          # This means we're testing the config file parsing in the runner
-          # but not slowing down all jobs unnecessarily as it doesn't add much
-          # testing the parsing on different operating systems and languages.
-          runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Run analyze
-        run: |
-          runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-javascript-windows:
-    name: Runner windows JS analyze
-    needs: [check-js, check-node-modules]
-    timeout-minutes: 30
-    runs-on: windows-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
-        run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages javascript --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Run analyze
-        run: |
-          runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-javascript-macos:
-    name: Runner macos JS analyze
-    needs: [check-js, check-node-modules]
-    timeout-minutes: 30
-    runs-on: macos-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
-        run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Run analyze
-        run: |
-          runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-ubuntu:
-    name: Runner ubuntu C# analyze
-    needs: [check-js, check-node-modules]
-    timeout-minutes: 30
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        run: |
-          . ./codeql-runner/codeql-env.sh
-          $CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-windows:
-    name: Runner windows C# analyze
-    needs: [check-js, check-node-modules]
-    # Build tracing currently does not support Windows 2022, so use `windows-2019` instead of
-    # `windows-latest`.
-    timeout-minutes: 30
-    runs-on: windows-2019
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        shell: powershell
-        run: |
-          cat ./codeql-runner/codeql-env.sh | Invoke-Expression
-          $Env:CODEQL_EXTRACTOR_CSHARP_ROOT = "" # Unset an environment variable to make sure the tracer resists this
-          & $Env:CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
-
-      - name: Upload tracer logs
-        uses: actions/upload-artifact@v2
-        with:
-          name: tracer-logs
-          path: ./codeql-runner/compound-build-tracer.log
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-macos:
-    name: Runner macos C# analyze
-    timeout-minutes: 30
-    needs: [check-js, check-node-modules]
-    runs-on: macos-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        shell: bash
-        run: |
-          . ./codeql-runner/codeql-env.sh
-          $CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-autobuild-ubuntu:
-    name: Runner ubuntu autobuild C# analyze
-    timeout-minutes: 30
-    needs: [check-js, check-node-modules]
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        run: |
-          ../action/runner/dist/codeql-runner-linux autobuild
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-autobuild-windows:
-    timeout-minutes: 30
-    name: Runner windows autobuild C# analyze
-    needs: [check-js, check-node-modules]
-    # Build tracing currently does not support Windows 2022, so use `windows-2019` instead of
-    # `windows-latest`.
-    runs-on: windows-2019
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        shell: powershell
-        run: |
-          ../action/runner/dist/codeql-runner-win.exe autobuild
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-analyze-csharp-autobuild-macos:
-    name: Runner macos autobuild C# analyze
-    needs: [check-js, check-node-modules]
-    runs-on: macos-latest
-    timeout-minutes: 30
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Move codeql-action
-        shell: bash
-        run: |
-          mkdir ../action
-          mv * .github ../action/
-          mv ../action/tests/multi-language-repo/{*,.github} .
-          mv ../action/.github/workflows .github
-
-      - name: Build runner
-        run: |
-          cd ../action/runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Build code
-        shell: bash
-        run: |
-          ../action/runner/dist/codeql-runner-macos autobuild
-
-      - name: Run analyze
-        run: |
-          ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-        env:
-          TEST_MODE: true
-
-  runner-upload-sarif:
-    name: Runner upload sarif
-    needs: [check-js, check-node-modules]
-    runs-on: ubuntu-latest
-    timeout-minutes: 30
-
-    if: ${{ github.event_name != 'pull_request' || github.event.pull_request.base.repo.id == github.event.pull_request.head.repo.id }}
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
-        run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - name: Upload with runner
-        run: |
-          # Deliberately don't use TEST_MODE here. This is specifically testing
-          # the compatibility with the API.
-          runner/dist/codeql-runner-linux upload --sarif-file src/testdata/empty-sarif.sarif --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-  runner-extractor-ram-threads-options:
-    name: Runner ubuntu extractor RAM and threads options
-    needs: [check-js, check-node-modules]
-    runs-on: ubuntu-latest
-    timeout-minutes: 30
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
-        run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - name: Run init
-        run: |
-          runner/dist/codeql-runner-linux init --ram=230 --threads=1 --repository $GITHUB_REPOSITORY --languages java --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
-
-      - name: Assert Results
-        shell: bash
-        run: |
-          . ./codeql-runner/codeql-env.sh
-          if [ "${CODEQL_RAM}" != "230" ]; then
-            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
-            exit 1
-          fi
-          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
-            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
-            exit 1
-          fi
-          if [ "${CODEQL_THREADS}" != "1" ]; then
-            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
-            exit 1
-          fi
-          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
-            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
-            exit 1
-          fi
+          # Run any commands referenced in package.json using Bash, otherwise
+          # we won't be able to find them on Windows.
+          npm config set script-shell bash
+          npm test

.github/workflows/python-deps.yml

@@ -2,22 +2,44 @@ name: Test Python Package Installation on Linux and Mac
 
 on:
   push:
-    branches: [main, v1]
+    branches: [main, releases/v1, releases/v2]
   pull_request:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
+    paths:
+      # Changes to this workflow.
+      - '.github/workflows/python-deps.yml'
+      # Changes to the Python package installation scripts and their tests.
+      - 'python-setup/**'
+      # Changes to the default CodeQL bundle version.
+      - '**/defaults.json'
+  schedule:
+    # Weekly on Monday.
+    - cron: '0 0 * * 1'
+  workflow_dispatch:
 
 jobs:
   test-setup-python-scripts:
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     strategy:
         fail-fast: false
         matrix:
-          os: [ubuntu-latest, macos-latest]
+          os: [ubuntu-latest, ubuntu-22.04, macos-latest]
           python_deps_type: [pipenv, poetry, requirements, setup_py]
           python_version: [2, 3]
+          exclude:
+            # Python2 and poetry are not supported. See https://github.com/actions/setup-python/issues/374
+            - python_version: 2
+              python_deps_type: poetry
+            # Python2 and pipenv are not supported since pipenv v2021.11.5
+            - python_version: 2
+              python_deps_type: pipenv
+            # Python2 is not available on ubuntu-22.04 by default -- see https://github.com/github/codeql-action/pull/1257
+            - python_version: 2
+              os: ubuntu-22.04
+
 
     env:
       PYTHON_DEPS_TYPE: ${{ matrix.python_deps_type }}
@@ -25,7 +47,7 @@ jobs:
 
     steps:
     # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
     - name: Initialize CodeQL
       uses: ./init
@@ -44,6 +66,7 @@ jobs:
 
         case ${{ matrix.os }} in
             ubuntu-latest*)     basePath="/opt";;
+            ubuntu-22.04*)     basePath="/opt";;
             macos-latest*)    basePath="/Users/runner";;
         esac
         echo ${basePath}
@@ -67,11 +90,11 @@ jobs:
     strategy:
         fail-fast: false
         matrix:
-          os: [ubuntu-latest, macos-latest]
+          os: [ubuntu-latest, ubuntu-22.04, macos-latest]
 
     steps:
     # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
     - name: Initialize CodeQL
       uses: ./init
@@ -90,6 +113,7 @@ jobs:
 
         case ${{ matrix.os }} in
             ubuntu-latest*)     basePath="/opt";;
+            ubuntu-22.04*)     basePath="/opt";;
             macos-latest*)    basePath="/Users/runner";;
         esac
         echo ${basePath}
@@ -115,6 +139,13 @@ jobs:
         matrix:
           python_deps_type: [pipenv, poetry, requirements, setup_py]
           python_version: [2, 3]
+          exclude:
+            # Python2 and poetry are not supported. See https://github.com/actions/setup-python/issues/374
+            - python_version: 2
+              python_deps_type: poetry
+            # Python2 and pipenv are not supported since pipenv v2021.11.5
+            - python_version: 2
+              python_deps_type: pipenv
 
     env:
       PYTHON_DEPS_TYPE: ${{ matrix.python_deps_type }}
@@ -122,9 +153,9 @@ jobs:
 
     steps:
     # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
-    - uses: actions/setup-python@v2
+    - uses: actions/setup-python@v3
       with:
         python-version: ${{ matrix.python_version }}
 
@@ -134,6 +165,8 @@ jobs:
         tools: latest
         languages: python
         setup-python-dependencies: false
+      env:
+        TEST_MODE: true
 
     - name: Test Auto Package Installation
       run: |

.github/workflows/query-filters.yml

@@ -0,0 +1,56 @@
+name: Query filters tests
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+
+jobs:
+  query-filters:
+    name: Query Filters Tests
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: latest
+
+    - name: Check SARIF for default queries with Single include, Single exclude
+      uses: ./../action/.github/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip
+        queries-not-run: js/path-injection
+        config-file: ./.github/codeql/codeql-config-query-filters1.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Check SARIF for query packs with Single include, Single exclude
+      uses: ./../action/.github/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip,javascript/example/empty-or-one-block
+        queries-not-run: js/path-injection
+        config-file: ./.github/codeql/codeql-config-query-filters2.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Check SARIF for query packs and local queries with Single include, Single exclude
+      uses: ./../action/.github/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip,javascript/example/empty-or-one-block,inrepo-javascript-querypack/show-ifs
+        queries-not-run: js/path-injection,complex-python-querypack/show-ifs,complex-python-querypack/foo/bar/show-ifs
+        config-file: ./.github/codeql/codeql-config-query-filters3.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/release-runner.yml

@@ -1,55 +0,0 @@
-name: Release runner
-
-on:
-  workflow_dispatch:
-    inputs:
-      bundle-tag:
-        description: 'Tag of the bundle release (e.g., "codeql-bundle-20200826")'
-        required: false
-
-jobs:
-  release-runner:
-    timeout-minutes: 30
-    runs-on: ubuntu-latest
-    env:
-      RELEASE_TAG: "${{ github.event.inputs.bundle-tag }}"
-
-    strategy:
-      matrix:
-        extension: ["linux", "macos", "win.exe"]
-
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Build runner
-        run: |
-          cd runner
-          npm install
-          npm run build-runner
-
-      - uses: actions/upload-artifact@v2
-        with:
-          name: codeql-runner-${{matrix.extension}}
-          path: runner/dist/codeql-runner-${{matrix.extension}}
-
-      - name: Resolve Upload URL for the release
-        if: ${{ github.event.inputs.bundle-tag != null }}
-        id: save_url
-        run: |
-          UPLOAD_URL=$(curl -sS \
-                "https://api.github.com/repos/${GITHUB_REPOSITORY}/releases/tags/${RELEASE_TAG}" \
-                -H "Accept: application/json" \
-                -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" | jq .upload_url | sed s/\"//g)
-          echo ${UPLOAD_URL}
-          echo "::set-output name=upload_url::${UPLOAD_URL}"
-
-      - name: Upload Platform Package
-        if: ${{ github.event.inputs.bundle-tag != null }}
-        uses: actions/upload-release-asset@v1
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          upload_url: ${{ steps.save_url.outputs.upload_url }}
-          asset_path: runner/dist/codeql-runner-${{matrix.extension}}
-          asset_name: codeql-runner-${{matrix.extension}}
-          asset_content_type: application/octet-stream

.github/workflows/runner-checks.yml

@@ -0,0 +1,412 @@
+name: CodeQL Runner Checks
+
+on:
+  push:
+    branches: [main, releases/v1, releases/v2]
+  pull_request:
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
+  workflow_dispatch:
+
+jobs:
+  runner-analyze-javascript-ubuntu:
+    name: Runner ubuntu JS analyze
+
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          # Pass --config-file here, but not for other jobs in this workflow.
+          # This means we're testing the config file parsing in the runner
+          # but not slowing down all jobs unnecessarily as it doesn't add much
+          # testing the parsing on different operating systems and languages.
+          runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Run analyze
+        run: |
+          runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-javascript-windows:
+    name: Runner windows JS analyze
+    timeout-minutes: 45
+    runs-on: windows-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages javascript --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Run analyze
+        run: |
+          runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-javascript-macos:
+    name: Runner macos JS analyze
+    timeout-minutes: 45
+    runs-on: macos-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Run analyze
+        run: |
+          runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-ubuntu:
+    name: Runner ubuntu C# analyze
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        run: |
+          . ./codeql-runner/codeql-env.sh
+          $CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-windows:
+    name: Runner windows C# analyze
+
+    # Build tracing currently does not support Windows 2022, so use `windows-2019` instead of
+    # `windows-latest`.
+    timeout-minutes: 45
+    runs-on: windows-2019
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        shell: powershell
+        run: |
+          cat ./codeql-runner/codeql-env.sh | Invoke-Expression
+          & $Env:CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
+
+      - name: Upload tracer logs
+        uses: actions/upload-artifact@v3
+        with:
+          name: tracer-logs
+          path: ./codeql-runner/compound-build-tracer.log
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-macos:
+    name: Runner macos C# analyze
+    timeout-minutes: 45
+
+    runs-on: macos-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        shell: bash
+        run: |
+          . ./codeql-runner/codeql-env.sh
+          $CODEQL_RUNNER dotnet build /p:UseSharedCompilation=false
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-autobuild-ubuntu:
+    name: Runner ubuntu autobuild C# analyze
+    timeout-minutes: 45
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        run: |
+          ../action/runner/dist/codeql-runner-linux autobuild
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-autobuild-windows:
+    timeout-minutes: 45
+    name: Runner windows autobuild C# analyze
+
+    # Build tracing currently does not support Windows 2022, so use `windows-2019` instead of
+    # `windows-latest`.
+    runs-on: windows-2019
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        shell: powershell
+        run: |
+          ../action/runner/dist/codeql-runner-win.exe autobuild
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-analyze-csharp-autobuild-macos:
+    name: Runner macos autobuild C# analyze
+
+    runs-on: macos-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../action
+          mv * .github ../action/
+          mv ../action/tests/multi-language-repo/{*,.github} .
+          mv ../action/.github/workflows .github
+
+      - name: Build runner
+        run: |
+          cd ../action/runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Build code
+        shell: bash
+        run: |
+          . codeql-runner/codeql-env.sh
+          CODEQL_RUNNER="$(cat codeql-runner/codeql-env.json | jq -r '.CODEQL_RUNNER')"
+          echo "$CODEQL_RUNNER"
+          $CODEQL_RUNNER ../action/runner/dist/codeql-runner-macos autobuild
+
+      - name: Run analyze
+        run: |
+          ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+  runner-upload-sarif:
+    name: Runner upload sarif
+
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    if: ${{ github.event_name != 'pull_request' || github.event.pull_request.base.repo.id == github.event.pull_request.head.repo.id }}
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - name: Upload with runner
+        run: |
+          # Deliberately don't use TEST_MODE here. This is specifically testing
+          # the compatibility with the API.
+          runner/dist/codeql-runner-linux upload --sarif-file src/testdata/empty-sarif.sarif --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+  runner-extractor-ram-threads-options:
+    name: Runner ubuntu extractor RAM and threads options
+
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - name: Run init
+        run: |
+          runner/dist/codeql-runner-linux init --ram=230 --threads=1 --repository $GITHUB_REPOSITORY --languages java --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+        env:
+          TEST_MODE: true
+
+      - name: Assert Results
+        shell: bash
+        run: |
+          . ./codeql-runner/codeql-env.sh
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi

.github/workflows/script/check-js.sh

@@ -14,8 +14,8 @@ npm run-script build
 # Check that repo is still clean
 if [ ! -z "$(git status --porcelain)" ]; then
     # If we get a fail here then the PR needs attention
-    >&2 echo "Failed: JavaScript files are not up to date. Run 'npm run-script build' to update"
+    >&2 echo "Failed: JavaScript files are not up to date. Run 'rm -rf lib && npm run-script build' to update"
     git status
     exit 1
 fi
-echo "Success: JavaScript files are up to date"
+echo "Success: JavaScript files are up to date"

.github/workflows/script/update-required-checks.sh

@@ -0,0 +1,37 @@
+#!/usr/bin/env bash
+# Update the required checks based on the current branch.
+# Typically, this will be main.
+
+if ! gh auth status 2>/dev/null; then
+  gh auth status
+  echo "Failed: Not authorized. This script requires admin access to github/codeql-action through the gh CLI."
+  exit 1
+fi
+
+if [ "$#" -eq 1 ]; then
+  # If we were passed an argument, use that as the SHA
+  GITHUB_SHA="$0"
+elif [ "$#" -gt 1 ]; then
+  echo "Usage: $0 [SHA]"
+  echo "Update the required checks based on the SHA, or main."
+  exit 1
+elif [ -z "$GITHUB_SHA" ]; then
+  # If we don't have a SHA, use main
+  GITHUB_SHA="$(git rev-parse main)"
+fi
+
+echo "Getting checks for $GITHUB_SHA"
+
+# Ignore any checks with "https://", CodeQL, LGTM, and Update checks.
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs | .[].name | select(contains("https://") or . == "CodeQL" or . == "LGTM.com" or contains("Update") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+
+echo "$CHECKS" | jq
+
+echo "{\"contexts\": ${CHECKS}}" > checks.json
+
+for BRANCH in main releases/v2 releases/v1; do
+  echo "Updating $BRANCH"
+  gh api --silent -X "PATCH" "repos/github/codeql-action/branches/$BRANCH/protection/required_status_checks" --input checks.json
+done
+
+rm checks.json

.github/workflows/split.yml

@@ -1,74 +0,0 @@
-#
-# Split the CodeQL Bundle into platform bundles
-#
-# Instructions:
-#  1. Upload the new codeql-bundle (codeql-bundle.tar.gz) as an asset of the
-#     release (codeql-bundle-20200826)
-#  2. Take note of the CLI Release used by the bundle (e.g., v2.2.5)
-#  3. Manually launch this workflow file (via the Actions UI) specifying
-#     - The CLI Release (e.g., v2.2.5)
-#     - The release tag (e.g., codeql-bundle-20200826)
-#  4. If everything succeeds you should see 3 new assets.
-#
-
-name: Split Bundle
-
-on:
- workflow_dispatch:
-    inputs:
-      cli-release:
-        description: 'CodeQL CLI Release (e.g., "v2.2.5")'
-        required: true
-      bundle-tag:
-        description: 'Tag of the bundle release (e.g., "codeql-bundle-20200826")'
-        required: true
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    timeout-minutes: 30
-    env:
-      CLI_RELEASE: "${{ github.event.inputs.cli-release }}"
-      RELEASE_TAG: "${{ github.event.inputs.bundle-tag }}"
-
-    strategy:
-      fail-fast: false
-      matrix:
-        platform: ["linux64", "osx64", "win64"]
-
-    steps:
-      - name: Resolve Upload URL for the release
-        id: save_url
-        run: |
-          UPLOAD_URL=$(curl -sS \
-               "https://api.github.com/repos/${GITHUB_REPOSITORY}/releases/tags/${RELEASE_TAG}" \
-               -H "Accept: application/json" \
-               -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" | jq .upload_url | sed s/\"//g)
-          echo ${UPLOAD_URL}
-          echo "::set-output name=upload_url::${UPLOAD_URL}"
-
-      - name: Download CodeQL CLI and Bundle
-        run: |
-          wget --no-verbose "https://github.com/${GITHUB_REPOSITORY}/releases/download/${RELEASE_TAG}/codeql-bundle.tar.gz"
-          wget --no-verbose "https://github.com/github/codeql-cli-binaries/releases/download/${CLI_RELEASE}/codeql-${{matrix.platform}}.zip"
-
-      - name: Create Platform Package
-        # Replace the codeql-binaries with the platform specific ones
-        run: |
-          gunzip codeql-bundle.tar.gz
-          tar -f codeql-bundle.tar --delete codeql
-          unzip -q codeql-${{matrix.platform}}.zip
-          tar -f codeql-bundle.tar --append codeql
-          gzip codeql-bundle.tar
-          mv codeql-bundle.tar.gz codeql-bundle-${{matrix.platform}}.tar.gz
-          du -sh codeql-bundle-${{matrix.platform}}.tar.gz
-
-      - name: Upload Platform Package
-        uses: actions/upload-release-asset@v1
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        with:
-          upload_url: ${{ steps.save_url.outputs.upload_url }}
-          asset_path: ./codeql-bundle-${{matrix.platform}}.tar.gz
-          asset_name: codeql-bundle-${{matrix.platform}}.tar.gz
-          asset_content_type: application/tar+gzip

.github/workflows/unset-environment-new-cli.yml

@@ -0,0 +1,95 @@
+# See `unset-environment-old-cli.yml` for reasoning behind the separate tests.
+name: PR Check - Test unsetting environment variables for CLI version >= 2.5.1
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  unset-environment:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20210809
+        - os: ubuntu-latest
+          version: cached
+        - os: ubuntu-latest
+          version: latest
+        - os: ubuntu-latest
+          version: nightly-latest
+    name: Test unsetting environment variables
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: ./../action/init
+      with:
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - name: Build code
+      shell: bash
+      run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+    - uses: ./../action/analyze
+      id: analysis
+      env:
+        TEST_MODE: true
+    - shell: bash
+      run: |
+        CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+        if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+          echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+          exit 1
+        fi
+        CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+        if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+          echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+          exit 1
+        fi
+        GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+        if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+          echo "::error::Did not create a database for Go, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+          exit 1
+        fi
+        JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+        if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+          echo "::error::Did not create a database for Java, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+          exit 1
+        fi
+        JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+        if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+          echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+          exit 1
+        fi
+        PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+        if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+          echo "::error::Did not create a database for Python, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/unset-environment-old-cli.yml

@@ -0,0 +1,89 @@
+# There was a bug, fixed in CLI v2.5.1, that didn't propagate environment
+# variables that the Java tracer needed. Here we test all languages
+# except Java for these CLI versions. In `unset-environment-new-cli.yml`
+# we test all languages for recent CLI versions.
+name: PR Check - Test unsetting environment variables for CLI version < 2.5.1
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v1
+    - releases/v2
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  workflow_dispatch: {}
+jobs:
+  unset-environment:
+    strategy:
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: stable-20210308
+        - os: ubuntu-latest
+          version: stable-20210319
+    name: Test unsetting environment variables
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v3
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/prepare-test
+      with:
+        version: ${{ matrix.version }}
+    - uses: ./../action/init
+      with:
+        languages: csharp,cpp,go,javascript,python
+        db-location: ${{ runner.temp }}/customDbLocation
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      env:
+        TEST_MODE: true
+    - name: Build code
+      shell: bash
+      run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+    - uses: ./../action/analyze
+      id: analysis
+      env:
+        TEST_MODE: true
+    - shell: bash
+      run: |
+        CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+        if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+          echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+          exit 1
+        fi
+        CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+        if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+          echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+          exit 1
+        fi
+        GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+        if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+          echo "::error::Did not create a database for Go, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+          exit 1
+        fi
+        JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+        if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+          echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+          exit 1
+        fi
+        PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+        if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+          echo "::error::Did not create a database for Python, or created it in the wrong location." \
+            "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+          exit 1
+        fi
+    env:
+      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/update-dependencies.yml

@@ -6,12 +6,12 @@ on:
 jobs:
   update:
     name: Update dependencies
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: macos-latest
     if: contains(github.event.pull_request.labels.*.name, 'Update dependencies') && (github.event.pull_request.head.repo.full_name == 'github/codeql-action')
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
 
     - name: Remove PR label
       env:

.github/workflows/update-release-branch.yml

@@ -1,25 +1,35 @@
 name: Update release branch
 on:
-  repository_dispatch:
-    # Example of how to trigger this:
-    # curl -H "Authorization: Bearer <token>" -X POST https://api.github.com/repos/github/codeql-action/dispatches -d '{"event_type":"update-release-branch"}'
-    # Replace <token> with a personal access token from this page: https://github.com/settings/tokens
-    types: [update-release-branch]
+  # You can trigger this workflow via workflow dispatch to start a release.
+  # This will open a PR to update the v2 release branch.
   workflow_dispatch:
 
+  # When the v2 release is complete, this workflow will open a PR to update the v1 release branch.
+  push:
+    branches:
+      - releases/v2
+
 jobs:
   update:
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ubuntu-latest
-    if: ${{ github.repository == 'github/codeql-action' }}
+    if: github.repository == 'github/codeql-action'
     steps:
-    - uses: actions/checkout@v2
+    - name: Dump environment
+      run: env
+
+    - name: Dump GitHub context
+      env:
+        GITHUB_CONTEXT: '${{ toJson(github) }}'
+      run: echo "$GITHUB_CONTEXT"
+
+    - uses: actions/checkout@v3
       with:
         # Need full history so we calculate diffs
         fetch-depth: 0
 
     - name: Set up Python
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v3
       with:
         python-version: 3.8
 
@@ -33,5 +43,20 @@ jobs:
         git config --global user.email "github-actions@github.com"
         git config --global user.name "github-actions[bot]"
 
-    - name: Update release branch
-      run: python .github/update-release-branch.py ${{ secrets.GITHUB_TOKEN }} ${{ github.repository }}
+    - name: Update v2 release branch
+      if: github.event_name == 'workflow_dispatch'
+      run: |
+        python .github/update-release-branch.py \
+          --github-token ${{ secrets.GITHUB_TOKEN }} \
+          --repository-nwo ${{ github.repository }} \
+          --mode v2-release \
+          --conductor ${GITHUB_ACTOR}
+
+    - name: Update v1 release branch
+      if: github.event_name == 'push'
+      run: |
+        python .github/update-release-branch.py \
+          --github-token ${{ secrets.GITHUB_TOKEN }} \
+          --repository-nwo ${{ github.repository }} \
+          --mode v1-release \
+          --conductor ${GITHUB_ACTOR}

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -7,19 +7,19 @@ on:
 jobs:
   update-supported-enterprise-server-versions:
     name: Update Supported Enterprise Server Versions
-    timeout-minutes: 30
+    timeout-minutes: 45
     runs-on: ubuntu-latest
     if: ${{ github.repository == 'github/codeql-action' }}
 
     steps:
       - name: Setup Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v3
         with:
           python-version: "3.7"
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
       - name: Checkout Enterprise Releases
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: github/enterprise-releases
           ssh-key: ${{ secrets.ENTERPRISE_RELEASES_SSH_KEY }}

CHANGELOG.md

@@ -4,6 +4,112 @@
 
 No user facing changes.
 
+## 2.1.27 - 06 Oct 2022
+
+- We are rolling out a feature of the CodeQL Action in October 2022 that changes the way that Go code is analyzed to be more consistent with other compiled languages like C/C++, C#, and Java. You do not need to alter your code scanning workflows. If you encounter any problems, please [file an issue](https://github.com/github/codeql-action/issues) or open a private ticket with GitHub Support and request an escalation to engineering.
+
+## 2.1.26 - 29 Sep 2022
+
+- Update default CodeQL bundle version to 2.11.0. [#1267](https://github.com/github/codeql-action/pull/1267)
+
+## 2.1.25 - 21 Sep 2022
+
+- We will soon be rolling out a feature of the CodeQL Action that stores some information used to make future runs faster in the GitHub Actions cache. Initially, this will only be enabled on JavaScript repositories, but we plan to add more languages to this soon. The new feature can be disabled by passing the `trap-caching: false` option to your workflow's `init` step, for example if you are already using the GitHub Actions cache for a different purpose and are near the storage limit for it.
+- Add support for Python automatic dependency installation with Poetry 1.2 [#1258](https://github.com/github/codeql-action/pull/1258).
+
+## 2.1.24 - 16 Sep 2022
+
+No user facing changes.
+
+## 2.1.23 - 14 Sep 2022
+
+- Allow CodeQL packs to be downloaded from GitHub Enterprise Server instances, using the new `registries` input for the `init` action.  [#1221](https://github.com/github/codeql-action/pull/1221)
+- Update default CodeQL bundle version to 2.10.5. [#1240](https://github.com/github/codeql-action/pull/1240)
+
+## 2.1.22 - 01 Sep 2022
+
+- Downloading CodeQL packs has been moved to the `init` step. Previously, CodeQL packs were downloaded during the `analyze` step. [#1218](https://github.com/github/codeql-action/pull/1218)
+- Update default CodeQL bundle version to 2.10.4. [#1224](https://github.com/github/codeql-action/pull/1224)
+- The newly released [Poetry 1.2](https://python-poetry.org/blog/announcing-poetry-1.2.0) is not yet supported. In the most common case where the CodeQL Action is automatically installing Python dependencies, it will continue to install and use Poetry 1.1 on its own. However, in certain cases such as with self-hosted runners, you may need to ensure Poetry 1.1 is installed yourself.
+
+## 2.1.21 - 25 Aug 2022
+
+- Improve error messages when the code scanning configuration file includes an invalid `queries` block or an invalid `query-filters` block. [#1208](https://github.com/github/codeql-action/pull/1208)
+- Fix a bug where Go build tracing could fail on Windows. [#1209](https://github.com/github/codeql-action/pull/1209)
+
+## 2.1.20 - 22 Aug 2022
+
+No user facing changes.
+
+## 2.1.19 - 17 Aug 2022
+
+- Add the ability to filter queries from a code scanning run by using the `query-filters` option in the code scanning configuration file. [#1098](https://github.com/github/codeql-action/pull/1098)
+- In debug mode, debug artifacts are now uploaded even if a step in the Actions workflow fails. [#1159](https://github.com/github/codeql-action/pull/1159)
+- Update default CodeQL bundle version to 2.10.3. [#1178](https://github.com/github/codeql-action/pull/1178)
+- The combination of python2 and Pipenv is no longer supported. [#1181](https://github.com/github/codeql-action/pull/1181)
+
+## 2.1.18 - 03 Aug 2022
+
+- Update default CodeQL bundle version to 2.10.2.  [#1156](https://github.com/github/codeql-action/pull/1156)
+
+## 2.1.17 - 28 Jul 2022
+
+- Update default CodeQL bundle version to 2.10.1.  [#1143](https://github.com/github/codeql-action/pull/1143)
+
+## 2.1.16 - 13 Jul 2022
+
+- You can now quickly debug a job that uses the CodeQL Action by re-running the job from the GitHub UI and selecting the "Enable debug logging" option. [#1132](https://github.com/github/codeql-action/pull/1132)
+- You can now see diagnostic messages produced by the analysis in the logs of the `analyze` Action by enabling debug mode. To enable debug mode, pass `debug: true` to the `init` Action, or [enable step debug logging](https://docs.github.com/en/actions/monitoring-and-troubleshooting-workflows/enabling-debug-logging#enabling-step-debug-logging). This feature is available for CodeQL CLI version 2.10.0 and later. [#1133](https://github.com/github/codeql-action/pull/1133)
+
+## 2.1.15 - 28 Jun 2022
+
+- CodeQL query packs listed in the `packs` configuration field will be skipped if their target language is not being analyzed in the current Actions job. Previously, this would throw an error. [#1116](https://github.com/github/codeql-action/pull/1116)
+- The combination of python2 and poetry is no longer supported. See <https://github.com/actions/setup-python/issues/374> for more details. [#1124](https://github.com/github/codeql-action/pull/1124)
+- Update default CodeQL bundle version to 2.10.0. [#1123](https://github.com/github/codeql-action/pull/1123)
+
+## 2.1.14 - 22 Jun 2022
+
+No user facing changes.
+
+## 2.1.13 - 21 Jun 2022
+
+- Update default CodeQL bundle version to 2.9.4. [#1100](https://github.com/github/codeql-action/pull/1100)
+
+## 2.1.12 - 01 Jun 2022
+
+- Update default CodeQL bundle version to 2.9.3. [#1084](https://github.com/github/codeql-action/pull/1084)
+
+## 2.1.11 - 17 May 2022
+
+- Update default CodeQL bundle version to 2.9.2. [#1074](https://github.com/github/codeql-action/pull/1074)
+
+## 2.1.10 - 10 May 2022
+
+- Update default CodeQL bundle version to 2.9.1. [#1056](https://github.com/github/codeql-action/pull/1056)
+- When `wait-for-processing` is enabled, the workflow will now fail if there were any errors that occurred during processing of the analysis results.
+
+## 2.1.9 - 27 Apr 2022
+
+- Add `working-directory` input to the `autobuild` action. [#1024](https://github.com/github/codeql-action/pull/1024)
+- The `analyze` and `upload-sarif` actions will now wait up to 2 minutes for processing to complete after they have uploaded the results so they can report any processing errors that occurred. This behavior can be disabled by setting the `wait-for-processing` action input to `"false"`. [#1007](https://github.com/github/codeql-action/pull/1007)
+- Update default CodeQL bundle version to 2.9.0.
+- Fix a bug where [status reporting fails on Windows](https://github.com/github/codeql-action/issues/1041). [#1042](https://github.com/github/codeql-action/pull/1042)
+
+## 2.1.8 - 08 Apr 2022
+
+- Update default CodeQL bundle version to 2.8.5. [#1014](https://github.com/github/codeql-action/pull/1014)
+- Fix error where the init action would fail due to a GitHub API request that was taking too long to complete [#1025](https://github.com/github/codeql-action/pull/1025)
+
+## 2.1.7 - 05 Apr 2022
+
+- A bug where additional queries specified in the workflow file would sometimes not be respected has been fixed. [#1018](https://github.com/github/codeql-action/pull/1018)
+
+## 2.1.6 - 30 Mar 2022
+
+- [v2+ only] The CodeQL Action now runs on Node.js v16. [#1000](https://github.com/github/codeql-action/pull/1000)
+- Update default CodeQL bundle version to 2.8.4. [#990](https://github.com/github/codeql-action/pull/990)
+- Fix a bug where an invalid `commit_oid` was being sent to code scanning when a custom checkout path was being used. [#956](https://github.com/github/codeql-action/pull/956)
+
 ## 1.1.5 - 15 Mar 2022
 
 - Update default CodeQL bundle version to 2.8.3.
@@ -19,7 +125,7 @@ No user facing changes.
 
 ## 1.1.3 - 23 Feb 2022
 
-- Fix bug where the CLR traces can continue tracing even after tracing should be stopped. [#938](https://github.com/github/codeql-action/pull/938)
+- Fix a bug where the CLR traces can continue tracing even after tracing should be stopped. [#938](https://github.com/github/codeql-action/pull/938)
 
 ## 1.1.2 - 17 Feb 2022
 

CODEOWNERS

@@ -1 +1,3 @@
 **/* @github/codeql-action-reviewers
+
+/python-setup/ @github/codeql-python @github/codeql-action-reviewers

CONTRIBUTING.md

@@ -61,35 +61,30 @@ Here are a few things you can do that will increase the likelihood of your pull
 ## Releasing (write access required)
 
 1. The first step of releasing a new version of the `codeql-action` is running the "Update release branch" workflow.
-    This workflow goes through the pull requests that have been merged to `main` since the last release, creates a changelog, then opens a pull request to merge the changes since the last release into the `v1` release branch.
+    This workflow goes through the pull requests that have been merged to `main` since the last release, creates a changelog, then opens a pull request to merge the changes since the last release into the `releases/v2` release branch.
 
-    A release is automatically started every Monday via a scheduled run of this workflow, however you can start a release manually by triggering a run via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
-1. The workflow run will open a pull request titled "Merge main into v1". Mark the pull request as [ready for review](https://docs.github.com/en/github/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/changing-the-stage-of-a-pull-request#marking-a-pull-request-as-ready-for-review) to trigger the PR checks.
+    You can start a release by triggering this workflow via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
+1. The workflow run will open a pull request titled "Merge main into releases/v2". Mark the pull request as [ready for review](https://docs.github.com/en/github/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/changing-the-stage-of-a-pull-request#marking-a-pull-request-as-ready-for-review) to trigger the PR checks.
 1. Review the checklist items in the pull request description.
-    Once you've checked off all but the last of these, approve the PR and automerge it.
-1. When the "Merge main into v1" pull request is merged into the `v1` branch, the "Tag release and merge back" workflow will create a mergeback PR.
-    This mergeback incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into v1" pull request, and bumps the patch version of the CodeQL Action.
+    Once you've checked off all but the last two of these, approve the PR and automerge it.
+1. When the "Merge main into releases/v2" pull request is merged into the `releases/v2` branch, the "Tag release and merge back" workflow will create a mergeback PR.
+    This mergeback incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v2" pull request, and bumps the patch version of the CodeQL Action.
 
-    Approve the mergeback PR and automerge it. Once the mergeback has been merged into main, the release is complete.
+    Approve the mergeback PR and automerge it.
+1. When the "Merge main into releases/v2" pull request is merged into the `releases/v2` branch, the "Update release branch" workflow will create a "Merge releases/v2 into releases/v1" pull request to merge the changes since the last release into the `releases/v1` release branch.
+    This ensures we keep both the `releases/v1` and `releases/v2` release branches up to date and fully supported.
+
+    Review the checklist items in the pull request description.
+    Once you've checked off all the items, approve the PR and automerge it.
+1. Once the mergeback has been merged to `main` and the "Merge releases/v2 into releases/v1" PR has been merged to `releases/v1`, the release is complete.
 
 ## Keeping the PR checks up to date (admin access required)
 
-Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred jobs that need to pass in order for a PR to turn green. Managing these PR checks manually is time consuming and complex. Here is a semi-automated approach.
-
-To regenerate the PR jobs for the action:
-
-1. From a terminal, run the following commands (replace `SHA` with the sha of the commit whose checks you want to use, typically this should be the latest from `main`):
-
-    ```sh
-    SHA= ####
-    CHECKS="$(gh api repos/github/codeql-action/commits/${SHA}/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs | .[].name | select(contains("https://") or . == "CodeQL" or . == "LGTM.com" or . == "Update dependencies" or . == "Update Supported Enterprise Server Versions" | not)]')"
-    echo "{\"contexts\": ${CHECKS}}" > checks.json
-    gh api -X "PATCH" repos/github/codeql-action/branches/main/protection/required_status_checks --input checks.json
-    gh api -X "PATCH" repos/github/codeql-action/branches/v1/protection/required_status_checks --input checks.json
-    ````
-
-2. Go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules have been updated.
+Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred jobs that need to pass in order for a PR to turn green. You can regenerate the checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
 
+1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
+2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
+3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v1`, and `v2` have been updated.
 
 ## Resources
 

README.md

@@ -52,11 +52,11 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@v1
+        uses: github/codeql-action/init@v2
         # Override language selection by uncommenting this and choosing your languages
         # with:
         #   languages: go, javascript, csharp, python, cpp, java
@@ -64,10 +64,10 @@ jobs:
       # Autobuild attempts to build any compiled languages (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below).
       - name: Autobuild
-        uses: github/codeql-action/autobuild@v1
+        uses: github/codeql-action/autobuild@v2
 
       # ℹ️ Command-line programs to run using the OS shell.
-      # 📚 https://git.io/JvXDl
+      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
 
       # ✏️ If the Autobuild fails above, remove it and uncomment the following
       #    three lines and modify them (or add more) to build your code if your
@@ -78,14 +78,14 @@ jobs:
       #     make release
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@v1
+        uses: github/codeql-action/analyze@v2
 ```
 
 If you prefer to integrate this within an existing CI workflow, it should end up looking something like this:
 
 ```yaml
 - name: Initialize CodeQL
-  uses: github/codeql-action/init@v1
+  uses: github/codeql-action/init@v2
   with:
     languages: go, javascript
 
@@ -95,7 +95,7 @@ If you prefer to integrate this within an existing CI workflow, it should end up
     make release
 
 - name: Perform CodeQL Analysis
-  uses: github/codeql-action/analyze@v1
+  uses: github/codeql-action/analyze@v2
 ```
 
 ### Configuration file
@@ -103,7 +103,7 @@ If you prefer to integrate this within an existing CI workflow, it should end up
 Use the `config-file` parameter of the `init` action to enable the configuration file. The value of `config-file` is the path to the configuration file you want to use. This example loads the configuration file `./.github/codeql/codeql-config.yml`.
 
 ```yaml
-- uses: github/codeql-action/init@v1
+- uses: github/codeql-action/init@v2
   with:
     config-file: ./.github/codeql/codeql-config.yml
 ```
@@ -111,7 +111,7 @@ Use the `config-file` parameter of the `init` action to enable the configuration
 The configuration file can be located in a different repository. This is useful if you want to share the same configuration across multiple repositories. If the configuration file is in a private repository you can also specify an `external-repository-token` option. This should be a personal access token that has read access to any repositories containing referenced config files and queries.
 
 ```yaml
-- uses: github/codeql-action/init@v1
+- uses: github/codeql-action/init@v2
   with:
     config-file: owner/repo/codeql-config.yml@branch
     external-repository-token: ${{ secrets.EXTERNAL_REPOSITORY_TOKEN }}
@@ -122,7 +122,7 @@ For information on how to write a configuration file, see "[Using a custom confi
 If you only want to customise the queries used, you can specify them in your workflow instead of creating a config file, using the `queries` property of the `init` action:
 
 ```yaml
-- uses: github/codeql-action/init@v1
+- uses: github/codeql-action/init@v2
   with:
     queries: <local-or-remote-query>,<another-query>
 ```
@@ -130,7 +130,7 @@ If you only want to customise the queries used, you can specify them in your wor
 By default, this will override any queries specified in a config file. If you wish to use both sets of queries, prefix the list of queries in the workflow with `+`:
 
 ```yaml
-- uses: github/codeql-action/init@v1
+- uses: github/codeql-action/init@v2
   with:
     queries: +<local-or-remote-query>,<another-query>
 ```
@@ -139,10 +139,3 @@ By default, this will override any queries specified in a config file. If you wi
 
 Read about [troubleshooting code scanning](https://help.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/troubleshooting-code-scanning).
 
-### Note on "missing analysis" message
-
-The very first time code scanning is run and if it is on a pull request, you will probably get a message mentioning a "missing analysis". This is expected.
-
-After code scanning has analyzed the code in a pull request, it needs to compare the analysis of the topic branch (the merge commit of the branch you used to create the pull request) with the analysis of the base branch (the branch into which you want to merge the pull request). This allows code scanning to compute which alerts are newly introduced by the pull request, which alerts were already present in the base branch, and whether any existing alerts are fixed by the changes in the pull request. Initially, if you use a pull request to add code scanning to a repository, the base branch has not yet been analyzed, so it's not possible to compute these details. In this case, when you click through from the results check on the pull request you will see the "Missing analysis for base commit SHA-HASH" message.
-
-For more information and other causes of this message, see [Reasons for the "Analysis not found" message](https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/setting-up-code-scanning-for-a-repository#reasons-for-the-analysis-not-found-message)

analyze/action.yml

@@ -61,16 +61,21 @@ inputs:
   wait-for-processing:
     description: If true, the Action will wait for the uploaded SARIF to be processed before completing.
     required: true
-    default: "false"
+    default: "true"
   token:
     default: ${{ github.token }}
   matrix:
     default: ${{ toJson(matrix) }}
+  expect-error:
+    description: "[Internal] It is an error to use this input outside of integration testing of the codeql-action."
+    required: false
+    default: "false"
 outputs:
   db-locations:
     description: A map from language to absolute path for each database created by CodeQL.
   sarif-id:
     description: The ID of the uploaded SARIF file.
 runs:
-  using: "node12"
+  using: "node16"
   main: "../lib/analyze-action.js"
+  post: "../lib/analyze-action-post.js"

autobuild/action.yml

@@ -6,6 +6,12 @@ inputs:
     default: ${{ github.token }}
   matrix:
     default: ${{ toJson(matrix) }}
+  working-directory:
+    description: >-
+      Run the autobuilder using this path (relative to $GITHUB_WORKSPACE) as
+      working directory. If this input is not set, the autobuilder runs with
+      $GITHUB_WORKSPACE as its working directory.
+    required: false
 runs:
-  using: 'node12'
-  main: '../lib/autobuild-action.js'
+  using: 'node16'
+  main: '../lib/autobuild-action.js'

init/action.yml

@@ -10,9 +10,34 @@ inputs:
     description: The languages to be analysed
     required: false
   token:
+    description: GitHub token to use for authenticating with this instance of GitHub. To download custom packs from multiple registries, use the registries input.
     default: ${{ github.token }}
+    required: false
+  registries:
+    description: |
+      Use this input only when you need to download CodeQL packages from another instance of GitHub. If you only need to download packages from this GitHub instance, use the token input instead.
+
+      A YAML string that defines the list of GitHub container registries to use for downloading packs. The string is in the following form (the | is required on the first line):
+
+      registries: |
+          - url: https://containers.GHEHOSTNAME1/v2/
+            packages:
+              - my-company/*
+              - my-company2/*
+            token: \$\{{ secrets.GHEHOSTNAME1_TOKEN }}
+
+          - url: https://ghcr.io/v2/
+            packages: */*
+            token: \$\{{ secrets.GHCR_TOKEN }}
+
+      The `url` property contains the URL to the container registry you want to connect to.
+
+      The `packages` property contains a single glob string or a list of glob strings, specifying which packages should be retrieved from this particular container registry. Order is important. Earlier entries will match before later entries.
+
+      The `token` property contains a connection token for this registry.    required: false
   matrix:
     default: ${{ toJson(matrix) }}
+    required: false
   config-file:
     description: Path of the config file to use
     required: false
@@ -32,7 +57,7 @@ inputs:
       analyses, you must specify packs in the codeql-config.yml file.
     required: false
   external-repository-token:
-    description: A token for fetching external config files and queries if they reside in a private repository.
+    description: A token for fetching external config files and queries if they reside in a private repository in the same GitHub instance that is running this action.
     required: false
   setup-python-dependencies:
     description: Try to auto-install your python dependencies
@@ -56,7 +81,10 @@ inputs:
       This input also sets the number of threads that can later be used by the "analyze" action.
     required: false
   debug:
-    description: Enable debugging mode. This will result in more output being produced which may be useful when debugging certain issues.
+    description: >-
+      Enable debugging mode.
+      This will result in more output being produced which may be useful when debugging certain issues.
+      Debugging mode is enabled automatically when step debug logging is turned on.
     required: false
     default: 'false'
   debug-artifact-name:
@@ -69,9 +97,14 @@ inputs:
       The name of the database uploaded to the debugging artifact.
       This is only used when debug mode is enabled.
     required: false
+  trap-caching:
+    description: >-
+      Explicitly enable or disable TRAP caching rather than respecting the feature flag for it.
+    required: false
 outputs:
   codeql-path:
     description: The path of the CodeQL binary used for analysis
 runs:
-  using: 'node12'
+  using: 'node16'
   main: '../lib/init-action.js'
+  post: '../lib/init-action-post.js'

lib/actions-util.js

@@ -19,7 +19,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.sanitizeArifactName = exports.isAnalyzingDefaultBranch = exports.getRelativeScriptPath = exports.isRunningLocalAction = exports.sendStatusReport = exports.createStatusReportBase = exports.getActionsStatus = exports.getRef = exports.computeAutomationID = exports.getAutomationID = exports.getAnalysisKey = exports.getWorkflowRunID = exports.getWorkflow = exports.formatWorkflowCause = exports.formatWorkflowErrors = exports.validateWorkflow = exports.getWorkflowErrors = exports.WorkflowErrors = exports.patternIsSuperset = exports.determineMergeBaseCommitOid = exports.getCommitOid = exports.getToolCacheDirectory = exports.getTemporaryDirectory = exports.getOptionalInput = exports.getRequiredInput = void 0;
+exports.printDebugLogs = exports.isAnalyzingDefaultBranch = exports.getRelativeScriptPath = exports.isRunningLocalAction = exports.workflowEventName = exports.sendStatusReport = exports.createStatusReportBase = exports.getActionsStatus = exports.getRef = exports.computeAutomationID = exports.getAutomationID = exports.getAnalysisKey = exports.getWorkflowRunID = exports.getWorkflow = exports.formatWorkflowCause = exports.formatWorkflowErrors = exports.validateWorkflow = exports.getWorkflowErrors = exports.WorkflowErrors = exports.patternIsSuperset = exports.determineMergeBaseCommitOid = exports.getCommitOid = exports.getTemporaryDirectory = exports.getOptionalInput = exports.getRequiredInput = void 0;
 const fs = __importStar(require("fs"));
 const os = __importStar(require("os"));
 const path = __importStar(require("path"));
@@ -66,17 +66,10 @@ function getTemporaryDirectory() {
         : (0, util_1.getRequiredEnvParam)("RUNNER_TEMP");
 }
 exports.getTemporaryDirectory = getTemporaryDirectory;
-function getToolCacheDirectory() {
-    const value = process.env["CODEQL_ACTION_TOOL_CACHE"];
-    return value !== undefined && value !== ""
-        ? value
-        : (0, util_1.getRequiredEnvParam)("RUNNER_TOOL_CACHE");
-}
-exports.getToolCacheDirectory = getToolCacheDirectory;
 /**
  * Gets the SHA of the commit that is currently checked out.
  */
-const getCommitOid = async function (ref = "HEAD") {
+const getCommitOid = async function (checkoutPath, ref = "HEAD") {
     // Try to use git to get the current commit SHA. If that fails then
     // log but otherwise silently fall back to using the SHA from the environment.
     // The only time these two values will differ is during analysis of a PR when
@@ -96,6 +89,7 @@ const getCommitOid = async function (ref = "HEAD") {
                     process.stderr.write(data);
                 },
             },
+            cwd: checkoutPath,
         }).exec();
         return commitOid.trim();
     }
@@ -111,10 +105,11 @@ exports.getCommitOid = getCommitOid;
  * Returns undefined if run by other triggers or the merge base cannot be determined.
  */
 const determineMergeBaseCommitOid = async function () {
-    if (process.env.GITHUB_EVENT_NAME !== "pull_request") {
+    if (workflowEventName() !== "pull_request") {
         return undefined;
     }
     const mergeSha = (0, util_1.getRequiredEnvParam)("GITHUB_SHA");
+    const checkoutPath = (0, exports.getOptionalInput)("checkout_path");
     try {
         let commitOid = "";
         let baseOid = "";
@@ -139,6 +134,7 @@ const determineMergeBaseCommitOid = async function () {
                     process.stderr.write(data);
                 },
             },
+            cwd: checkoutPath,
         }).exec();
         // Let's confirm our assumptions: We had a merge commit and the parsed parent data looks correct
         if (commitOid === mergeSha &&
@@ -354,7 +350,7 @@ async function getWorkflowPath() {
     const repo = repo_nwo[1];
     const run_id = Number((0, util_1.getRequiredEnvParam)("GITHUB_RUN_ID"));
     const apiClient = api.getActionsApiClient();
-    const runsResponse = await apiClient.request("GET /repos/:owner/:repo/actions/runs/:run_id", {
+    const runsResponse = await apiClient.request("GET /repos/:owner/:repo/actions/runs/:run_id?exclude_pull_requests=true", {
         owner,
         repo,
         run_id,
@@ -427,6 +423,9 @@ async function getRef() {
     // or in the form "refs/pull/N/merge" on a pull_request event
     const refInput = (0, exports.getOptionalInput)("ref");
     const shaInput = (0, exports.getOptionalInput)("sha");
+    const checkoutPath = (0, exports.getOptionalInput)("checkout_path") ||
+        (0, exports.getOptionalInput)("source-root") ||
+        (0, util_1.getRequiredEnvParam)("GITHUB_WORKSPACE");
     const hasRefInput = !!refInput;
     const hasShaInput = !!shaInput;
     // If one of 'ref' or 'sha' are provided, both are required
@@ -448,15 +447,14 @@ async function getRef() {
     if (!pull_ref_regex.test(ref)) {
         return ref;
     }
-    const head = await (0, exports.getCommitOid)("HEAD");
-    // in actions/checkout@v2 we can check if git rev-parse HEAD == GITHUB_SHA
+    const head = await (0, exports.getCommitOid)(checkoutPath, "HEAD");
+    // in actions/checkout@v2+ we can check if git rev-parse HEAD == GITHUB_SHA
     // in actions/checkout@v1 this may not be true as it checks out the repository
     // using GITHUB_REF. There is a subtle race condition where
     // git rev-parse GITHUB_REF != GITHUB_SHA, so we must check
-    // git git-parse GITHUB_REF == git rev-parse HEAD instead.
+    // git rev-parse GITHUB_REF == git rev-parse HEAD instead.
     const hasChangedRef = sha !== head &&
-        (await (0, exports.getCommitOid)(ref.replace(/^refs\/pull\//, "refs/remotes/pull/"))) !==
-            head;
+        (await (0, exports.getCommitOid)(checkoutPath, ref.replace(/^refs\/pull\//, "refs/remotes/pull/"))) !== head;
     if (hasChangedRef) {
         const newRef = ref.replace(pull_ref_regex, "refs/pull/$1/head");
         core.debug(`No longer on merge commit, rewriting ref from ${ref} to ${newRef}.`);
@@ -503,11 +501,7 @@ async function createStatusReportBase(actionName, status, actionStartedAt, cause
     }
     const runnerOs = (0, util_1.getRequiredEnvParam)("RUNNER_OS");
     const codeQlCliVersion = (0, util_1.getCachedCodeQlVersion)();
-    // If running locally then the GITHUB_ACTION_REF cannot be trusted as it may be for the previous action
-    // See https://github.com/actions/runner/issues/803
-    const actionRef = isRunningLocalAction()
-        ? undefined
-        : process.env["GITHUB_ACTION_REF"];
+    const actionRef = process.env["GITHUB_ACTION_REF"];
     const statusReport = {
         workflow_run_id: workflowRunID,
         workflow_name: workflowName,
@@ -550,7 +544,7 @@ async function createStatusReportBase(actionName, status, actionStartedAt, cause
         statusReport.runner_os_release = os.release();
     }
     if (codeQlCliVersion !== undefined) {
-        statusReport.codeql_cli_version = codeQlCliVersion;
+        statusReport.codeql_version = codeQlCliVersion;
     }
     return statusReport;
 }
@@ -579,8 +573,7 @@ async function sendStatusReport(statusReport) {
     const statusReportJSON = JSON.stringify(statusReport);
     core.debug(`Sending status report: ${statusReportJSON}`);
     // If in test mode we don't want to upload the results
-    const testMode = process.env["TEST_MODE"] === "true" || false;
-    if (testMode) {
+    if ((0, util_1.isInTestMode)()) {
         core.debug("In test mode. Status reports are not uploaded.");
         return true;
     }
@@ -633,9 +626,21 @@ async function sendStatusReport(statusReport) {
     }
 }
 exports.sendStatusReport = sendStatusReport;
+function workflowEventName() {
+    // If the original event is dynamic CODESCANNING_EVENT_NAME will contain the right info (push/pull_request)
+    if (process.env["GITHUB_EVENT_NAME"] === "dynamic") {
+        const value = process.env["CODESCANNING_EVENT_NAME"];
+        if (value === undefined || value.length === 0) {
+            return process.env["GITHUB_EVENT_NAME"];
+        }
+        return value;
+    }
+    return process.env["GITHUB_EVENT_NAME"];
+}
+exports.workflowEventName = workflowEventName;
 // Was the workflow run triggered by a `push` event, for example as opposed to a `pull_request` event.
 function workflowIsTriggeredByPushEvent() {
-    return process.env["GITHUB_EVENT_NAME"] === "push";
+    return workflowEventName() === "push";
 }
 // Is dependabot the actor that triggered the current workflow run.
 function isDependabotActor() {
@@ -666,22 +671,51 @@ function getWorkflowEvent() {
         throw new Error(`Unable to read workflow event JSON from ${eventJsonFile}: ${e}`);
     }
 }
+function removeRefsHeadsPrefix(ref) {
+    return ref.startsWith("refs/heads/") ? ref.slice("refs/heads/".length) : ref;
+}
 // Is the version of the repository we are currently analyzing from the default branch,
 // or alternatively from another branch or a pull request.
 async function isAnalyzingDefaultBranch() {
     var _a;
     // Get the current ref and trim and refs/heads/ prefix
     let currentRef = await getRef();
-    currentRef = currentRef.startsWith("refs/heads/")
-        ? currentRef.slice("refs/heads/".length)
-        : currentRef;
+    currentRef = removeRefsHeadsPrefix(currentRef);
     const event = getWorkflowEvent();
-    const defaultBranch = (_a = event === null || event === void 0 ? void 0 : event.repository) === null || _a === void 0 ? void 0 : _a.default_branch;
+    let defaultBranch = (_a = event === null || event === void 0 ? void 0 : event.repository) === null || _a === void 0 ? void 0 : _a.default_branch;
+    if (process.env.GITHUB_EVENT_NAME === "schedule") {
+        defaultBranch = removeRefsHeadsPrefix((0, util_1.getRequiredEnvParam)("GITHUB_REF"));
+    }
     return currentRef === defaultBranch;
 }
 exports.isAnalyzingDefaultBranch = isAnalyzingDefaultBranch;
-function sanitizeArifactName(name) {
-    return name.replace(/[^a-zA-Z0-9_\\-]+/g, "");
+async function printDebugLogs(config) {
+    for (const language of config.languages) {
+        const databaseDirectory = (0, util_1.getCodeQLDatabasePath)(config, language);
+        const logsDirectory = path.join(databaseDirectory, "log");
+        if (!(0, util_1.doesDirectoryExist)(logsDirectory)) {
+            core.info(`Directory ${logsDirectory} does not exist.`);
+            continue; // Skip this language database.
+        }
+        const walkLogFiles = (dir) => {
+            const entries = fs.readdirSync(dir, { withFileTypes: true });
+            if (entries.length === 0) {
+                core.info(`No debug logs found at directory ${logsDirectory}.`);
+            }
+            for (const entry of entries) {
+                if (entry.isFile()) {
+                    const absolutePath = path.resolve(dir, entry.name);
+                    core.startGroup(`CodeQL Debug Logs - ${language} - ${entry.name} from file at path ${absolutePath}`);
+                    process.stdout.write(fs.readFileSync(absolutePath));
+                    core.endGroup();
+                }
+                else if (entry.isDirectory()) {
+                    walkLogFiles(path.resolve(dir, entry.name));
+                }
+            }
+        };
+        walkLogFiles(logsDirectory);
+    }
 }
-exports.sanitizeArifactName = sanitizeArifactName;
+exports.printDebugLogs = printDebugLogs;
 //# sourceMappingURL=actions-util.js.map

lib/actions-util.test.js

@@ -39,74 +39,93 @@ function errorCodes(actual, expected) {
     await t.throwsAsync(actionsutil.getRef);
 });
 (0, ava_1.default)("getRef() returns merge PR ref if GITHUB_SHA still checked out", async (t) => {
-    const expectedRef = "refs/pull/1/merge";
-    const currentSha = "a".repeat(40);
-    process.env["GITHUB_REF"] = expectedRef;
-    process.env["GITHUB_SHA"] = currentSha;
-    const callback = sinon.stub(actionsutil, "getCommitOid");
-    callback.withArgs("HEAD").resolves(currentSha);
-    const actualRef = await actionsutil.getRef();
-    t.deepEqual(actualRef, expectedRef);
-    callback.restore();
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        const expectedRef = "refs/pull/1/merge";
+        const currentSha = "a".repeat(40);
+        process.env["GITHUB_REF"] = expectedRef;
+        process.env["GITHUB_SHA"] = currentSha;
+        const callback = sinon.stub(actionsutil, "getCommitOid");
+        callback.withArgs("HEAD").resolves(currentSha);
+        const actualRef = await actionsutil.getRef();
+        t.deepEqual(actualRef, expectedRef);
+        callback.restore();
+    });
 });
 (0, ava_1.default)("getRef() returns merge PR ref if GITHUB_REF still checked out but sha has changed (actions checkout@v1)", async (t) => {
-    const expectedRef = "refs/pull/1/merge";
-    process.env["GITHUB_REF"] = expectedRef;
-    process.env["GITHUB_SHA"] = "b".repeat(40);
-    const sha = "a".repeat(40);
-    const callback = sinon.stub(actionsutil, "getCommitOid");
-    callback.withArgs("refs/remotes/pull/1/merge").resolves(sha);
-    callback.withArgs("HEAD").resolves(sha);
-    const actualRef = await actionsutil.getRef();
-    t.deepEqual(actualRef, expectedRef);
-    callback.restore();
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        const expectedRef = "refs/pull/1/merge";
+        process.env["GITHUB_REF"] = expectedRef;
+        process.env["GITHUB_SHA"] = "b".repeat(40);
+        const sha = "a".repeat(40);
+        const callback = sinon.stub(actionsutil, "getCommitOid");
+        callback.withArgs("refs/remotes/pull/1/merge").resolves(sha);
+        callback.withArgs("HEAD").resolves(sha);
+        const actualRef = await actionsutil.getRef();
+        t.deepEqual(actualRef, expectedRef);
+        callback.restore();
+    });
 });
 (0, ava_1.default)("getRef() returns head PR ref if GITHUB_REF no longer checked out", async (t) => {
-    process.env["GITHUB_REF"] = "refs/pull/1/merge";
-    process.env["GITHUB_SHA"] = "a".repeat(40);
-    const callback = sinon.stub(actionsutil, "getCommitOid");
-    callback.withArgs("refs/pull/1/merge").resolves("a".repeat(40));
-    callback.withArgs("HEAD").resolves("b".repeat(40));
-    const actualRef = await actionsutil.getRef();
-    t.deepEqual(actualRef, "refs/pull/1/head");
-    callback.restore();
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        process.env["GITHUB_REF"] = "refs/pull/1/merge";
+        process.env["GITHUB_SHA"] = "a".repeat(40);
+        const callback = sinon.stub(actionsutil, "getCommitOid");
+        callback.withArgs(tmpDir, "refs/pull/1/merge").resolves("a".repeat(40));
+        callback.withArgs(tmpDir, "HEAD").resolves("b".repeat(40));
+        const actualRef = await actionsutil.getRef();
+        t.deepEqual(actualRef, "refs/pull/1/head");
+        callback.restore();
+    });
 });
 (0, ava_1.default)("getRef() returns ref provided as an input and ignores current HEAD", async (t) => {
-    const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
-    getAdditionalInputStub.withArgs("ref").resolves("refs/pull/2/merge");
-    getAdditionalInputStub.withArgs("sha").resolves("b".repeat(40));
-    // These values are be ignored
-    process.env["GITHUB_REF"] = "refs/pull/1/merge";
-    process.env["GITHUB_SHA"] = "a".repeat(40);
-    const callback = sinon.stub(actionsutil, "getCommitOid");
-    callback.withArgs("refs/pull/1/merge").resolves("b".repeat(40));
-    callback.withArgs("HEAD").resolves("b".repeat(40));
-    const actualRef = await actionsutil.getRef();
-    t.deepEqual(actualRef, "refs/pull/2/merge");
-    callback.restore();
-    getAdditionalInputStub.restore();
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
+        getAdditionalInputStub.withArgs("ref").resolves("refs/pull/2/merge");
+        getAdditionalInputStub.withArgs("sha").resolves("b".repeat(40));
+        // These values are be ignored
+        process.env["GITHUB_REF"] = "refs/pull/1/merge";
+        process.env["GITHUB_SHA"] = "a".repeat(40);
+        const callback = sinon.stub(actionsutil, "getCommitOid");
+        callback.withArgs("refs/pull/1/merge").resolves("b".repeat(40));
+        callback.withArgs("HEAD").resolves("b".repeat(40));
+        const actualRef = await actionsutil.getRef();
+        t.deepEqual(actualRef, "refs/pull/2/merge");
+        callback.restore();
+        getAdditionalInputStub.restore();
+    });
 });
 (0, ava_1.default)("getRef() throws an error if only `ref` is provided as an input", async (t) => {
-    const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
-    getAdditionalInputStub.withArgs("ref").resolves("refs/pull/1/merge");
-    await t.throwsAsync(async () => {
-        await actionsutil.getRef();
-    }, {
-        instanceOf: Error,
-        message: "Both 'ref' and 'sha' are required if one of them is provided.",
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
+        getAdditionalInputStub.withArgs("ref").resolves("refs/pull/1/merge");
+        await t.throwsAsync(async () => {
+            await actionsutil.getRef();
+        }, {
+            instanceOf: Error,
+            message: "Both 'ref' and 'sha' are required if one of them is provided.",
+        });
+        getAdditionalInputStub.restore();
     });
-    getAdditionalInputStub.restore();
 });
 (0, ava_1.default)("getRef() throws an error if only `sha` is provided as an input", async (t) => {
-    const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
-    getAdditionalInputStub.withArgs("sha").resolves("a".repeat(40));
-    await t.throwsAsync(async () => {
-        await actionsutil.getRef();
-    }, {
-        instanceOf: Error,
-        message: "Both 'ref' and 'sha' are required if one of them is provided.",
+    await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+        process.env["GITHUB_WORKSPACE"] = "/tmp";
+        const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
+        getAdditionalInputStub.withArgs("sha").resolves("a".repeat(40));
+        await t.throwsAsync(async () => {
+            await actionsutil.getRef();
+        }, {
+            instanceOf: Error,
+            message: "Both 'ref' and 'sha' are required if one of them is provided.",
+        });
+        getAdditionalInputStub.restore();
     });
-    getAdditionalInputStub.restore();
 });
 (0, ava_1.default)("computeAutomationID()", async (t) => {
     let actualAutomationID = actionsutil.computeAutomationID(".github/workflows/codeql-analysis.yml:analyze", '{"language": "javascript", "os": "linux"}');
@@ -461,6 +480,7 @@ on: ["push"]
 });
 (0, ava_1.default)("isAnalyzingDefaultBranch()", async (t) => {
     await (0, util_1.withTmpDir)(async (tmpDir) => {
+        (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
         const envFile = path.join(tmpDir, "event.json");
         fs.writeFileSync(envFile, JSON.stringify({
             repository: {
@@ -475,12 +495,31 @@ on: ["push"]
         t.deepEqual(await actionsutil.isAnalyzingDefaultBranch(), true);
         process.env["GITHUB_REF"] = "feature";
         t.deepEqual(await actionsutil.isAnalyzingDefaultBranch(), false);
+        fs.writeFileSync(envFile, JSON.stringify({
+            schedule: "0 0 * * *",
+        }));
+        process.env["GITHUB_EVENT_NAME"] = "schedule";
+        process.env["GITHUB_REF"] = "refs/heads/main";
+        t.deepEqual(await actionsutil.isAnalyzingDefaultBranch(), true);
+        const getAdditionalInputStub = sinon.stub(actionsutil, "getOptionalInput");
+        getAdditionalInputStub
+            .withArgs("ref")
+            .resolves("refs/heads/something-else");
+        getAdditionalInputStub
+            .withArgs("sha")
+            .resolves("0000000000000000000000000000000000000000");
+        process.env["GITHUB_EVENT_NAME"] = "schedule";
+        process.env["GITHUB_REF"] = "refs/heads/main";
+        t.deepEqual(await actionsutil.isAnalyzingDefaultBranch(), false);
+        getAdditionalInputStub.restore();
     });
 });
-(0, ava_1.default)("sanitizeArifactName", (t) => {
-    t.deepEqual(actionsutil.sanitizeArifactName("hello-world_"), "hello-world_");
-    t.deepEqual(actionsutil.sanitizeArifactName("hello`world`"), "helloworld");
-    t.deepEqual(actionsutil.sanitizeArifactName("hello===123"), "hello123");
-    t.deepEqual(actionsutil.sanitizeArifactName("*m)a&n^y%i££n+v!a:l[i]d"), "manyinvalid");
+(0, ava_1.default)("workflowEventName()", async (t) => {
+    process.env["GITHUB_EVENT_NAME"] = "push";
+    t.deepEqual(actionsutil.workflowEventName(), "push");
+    process.env["GITHUB_EVENT_NAME"] = "dynamic";
+    t.deepEqual(actionsutil.workflowEventName(), "dynamic");
+    process.env["CODESCANNING_EVENT_NAME"] = "push";
+    t.deepEqual(actionsutil.workflowEventName(), "push");
 });
 //# sourceMappingURL=actions-util.test.js.map

lib/analysis-paths.js

@@ -58,14 +58,11 @@ function includeAndExcludeAnalysisPaths(config) {
     }
     // If the temporary or tools directory is in the working directory ignore that too.
     const tempRelativeToWorking = path.relative(process.cwd(), config.tempDir);
-    const toolsRelativeToWorking = path.relative(process.cwd(), config.toolCacheDir);
     let pathsIgnore = config.pathsIgnore;
-    if (!tempRelativeToWorking.startsWith("..")) {
+    if (!tempRelativeToWorking.startsWith("..") &&
+        !path.isAbsolute(tempRelativeToWorking)) {
         pathsIgnore = pathsIgnore.concat(tempRelativeToWorking);
     }
-    if (!toolsRelativeToWorking.startsWith("..")) {
-        pathsIgnore = pathsIgnore.concat(toolsRelativeToWorking);
-    }
     if (pathsIgnore.length !== 0) {
         process.env["LGTM_INDEX_EXCLUDE"] = buildIncludeExcludeEnvVar(pathsIgnore);
     }

lib/analysis-paths.js.map

@@ -1 +1 @@
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lib/analysis-paths.test.js

@@ -37,7 +37,6 @@ const util = __importStar(require("./util"));
             paths: [],
             originalUserInput: {},
             tempDir: tmpDir,
-            toolCacheDir: tmpDir,
             codeQLCmd: "",
             gitHubVersion: { type: util.GitHubVariant.DOTCOM },
             dbLocation: path.resolve(tmpDir, "codeql_databases"),
@@ -45,6 +44,13 @@ const util = __importStar(require("./util"));
             debugMode: false,
             debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
             debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+            augmentationProperties: {
+                injectedMlQueries: false,
+                packsInputCombines: false,
+                queriesInputCombines: false,
+            },
+            trapCaches: {},
+            trapCacheDownloadTime: 0,
         };
         analysisPaths.includeAndExcludeAnalysisPaths(config);
         t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
@@ -61,7 +67,6 @@ const util = __importStar(require("./util"));
             pathsIgnore: ["path4", "path5", "path6/**"],
             originalUserInput: {},
             tempDir: tmpDir,
-            toolCacheDir: tmpDir,
             codeQLCmd: "",
             gitHubVersion: { type: util.GitHubVariant.DOTCOM },
             dbLocation: path.resolve(tmpDir, "codeql_databases"),
@@ -69,6 +74,13 @@ const util = __importStar(require("./util"));
             debugMode: false,
             debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
             debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+            augmentationProperties: {
+                injectedMlQueries: false,
+                packsInputCombines: false,
+                queriesInputCombines: false,
+            },
+            trapCaches: {},
+            trapCacheDownloadTime: 0,
         };
         analysisPaths.includeAndExcludeAnalysisPaths(config);
         t.is(process.env["LGTM_INDEX_INCLUDE"], "path1\npath2");
@@ -77,28 +89,32 @@ const util = __importStar(require("./util"));
     });
 });
 (0, ava_1.default)("exclude temp dir", async (t) => {
-    return await util.withTmpDir(async (toolCacheDir) => {
-        const tempDir = path.join(process.cwd(), "codeql-runner-temp");
-        const config = {
-            languages: [],
-            queries: {},
-            pathsIgnore: [],
-            paths: [],
-            originalUserInput: {},
-            tempDir,
-            toolCacheDir,
-            codeQLCmd: "",
-            gitHubVersion: { type: util.GitHubVariant.DOTCOM },
-            dbLocation: path.resolve(tempDir, "codeql_databases"),
-            packs: {},
-            debugMode: false,
-            debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
-            debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
-        };
-        analysisPaths.includeAndExcludeAnalysisPaths(config);
-        t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
-        t.is(process.env["LGTM_INDEX_EXCLUDE"], "codeql-runner-temp");
-        t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
-    });
+    const tempDir = path.join(process.cwd(), "codeql-runner-temp");
+    const config = {
+        languages: [],
+        queries: {},
+        pathsIgnore: [],
+        paths: [],
+        originalUserInput: {},
+        tempDir,
+        codeQLCmd: "",
+        gitHubVersion: { type: util.GitHubVariant.DOTCOM },
+        dbLocation: path.resolve(tempDir, "codeql_databases"),
+        packs: {},
+        debugMode: false,
+        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
+        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+        augmentationProperties: {
+            injectedMlQueries: false,
+            packsInputCombines: false,
+            queriesInputCombines: false,
+        },
+        trapCaches: {},
+        trapCacheDownloadTime: 0,
+    };
+    analysisPaths.includeAndExcludeAnalysisPaths(config);
+    t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
+    t.is(process.env["LGTM_INDEX_EXCLUDE"], "codeql-runner-temp");
+    t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
 });
 //# sourceMappingURL=analysis-paths.test.js.map

lib/analysis-paths.test.js.map

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lib/analyze-action-env.test.js

@@ -38,22 +38,29 @@ const util = __importStar(require("./util"));
 // but the first test would fail.
 (0, ava_1.default)("analyze action with RAM & threads from environment variables", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
-        process.env["GITHUB_SERVER_URL"] = "fake-server-url";
-        process.env["GITHUB_REPOSITORY"] = "fake/repository";
+        process.env["GITHUB_SERVER_URL"] = util.GITHUB_DOTCOM_URL;
+        process.env["GITHUB_REPOSITORY"] = "github/codeql-action-fake-repository";
+        process.env["GITHUB_API_URL"] = "https://api.github.com";
         sinon
             .stub(actionsUtil, "createStatusReportBase")
             .resolves({});
         sinon.stub(actionsUtil, "sendStatusReport").resolves(true);
+        const gitHubVersion = {
+            type: util.GitHubVariant.DOTCOM,
+        };
         sinon.stub(configUtils, "getConfig").resolves({
-            gitHubVersion: { type: util.GitHubVariant.DOTCOM },
+            gitHubVersion,
             languages: [],
             packs: [],
+            trapCaches: {},
         });
         const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
         requiredInputStub.withArgs("token").returns("fake-token");
         requiredInputStub.withArgs("upload-database").returns("false");
         const optionalInputStub = sinon.stub(actionsUtil, "getOptionalInput");
         optionalInputStub.withArgs("cleanup-level").returns("none");
+        optionalInputStub.withArgs("expect-error").returns("false");
+        sinon.stub(util, "getGitHubVersion").resolves(gitHubVersion);
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
         (0, testing_utils_1.mockFeatureFlagApiEndpoint)(200, {});
         // When there are no action inputs for RAM and threads, the action uses

lib/analyze-action-env.test.js.map

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lib/analyze-action-input.test.js

@@ -38,22 +38,29 @@ const util = __importStar(require("./util"));
 // but the first test would fail.
 (0, ava_1.default)("analyze action with RAM & threads from action inputs", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
-        process.env["GITHUB_SERVER_URL"] = "fake-server-url";
-        process.env["GITHUB_REPOSITORY"] = "fake/repository";
+        process.env["GITHUB_SERVER_URL"] = util.GITHUB_DOTCOM_URL;
+        process.env["GITHUB_REPOSITORY"] = "github/codeql-action-fake-repository";
+        process.env["GITHUB_API_URL"] = "https://api.github.com";
         sinon
             .stub(actionsUtil, "createStatusReportBase")
             .resolves({});
         sinon.stub(actionsUtil, "sendStatusReport").resolves(true);
+        const gitHubVersion = {
+            type: util.GitHubVariant.DOTCOM,
+        };
         sinon.stub(configUtils, "getConfig").resolves({
-            gitHubVersion: { type: util.GitHubVariant.DOTCOM },
+            gitHubVersion,
             languages: [],
             packs: [],
+            trapCaches: {},
         });
         const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
         requiredInputStub.withArgs("token").returns("fake-token");
         requiredInputStub.withArgs("upload-database").returns("false");
         const optionalInputStub = sinon.stub(actionsUtil, "getOptionalInput");
         optionalInputStub.withArgs("cleanup-level").returns("none");
+        optionalInputStub.withArgs("expect-error").returns("false");
+        sinon.stub(util, "getGitHubVersion").resolves(gitHubVersion);
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
         (0, testing_utils_1.mockFeatureFlagApiEndpoint)(200, {});
         process.env["CODEQL_THREADS"] = "1";

lib/analyze-action-input.test.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyze-action-input.test.js","sourceRoot":"","sources":["../src/analyze-action-input.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,mDAAqC;AACrC,4DAA8C;AAC9C,mDAIyB;AACzB,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,4EAA4E;AAC5E,4EAA4E;AAC5E,+EAA+E;AAC/E,+EAA+E;AAC/E,gFAAgF;AAChF,iCAAiC;AAEjC,IAAA,aAAI,EAAC,sDAAsD,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvE,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QACrC,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,iBAAiB,CAAC;QAC1D,OAAO,CAAC,GAAG,CAAC,mBAAmB,CAAC,GAAG,sCAAsC,CAAC;QAC1E,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,wBAAwB,CAAC;QACzD,KAAK;aACF,IAAI,CAAC,WAAW,EAAE,wBAAwB,CAAC;aAC3C,QAAQ,CAAC,EAAkC,CAAC,CAAC;QAChD,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAC3D,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,aAAa;YACb,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;YACT,UAAU,EAAE,EAAE;SACkB,CAAC,CAAC;QACpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAC1D,iBAAiB,CAAC,QAAQ,CAAC,iBAAiB,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC/D,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAC5D,KAAK,CAAC,IAAI,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;QAC7D,IAAA,gCAAgB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACjC,IAAA,0CAA0B,EAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QAEpC,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,GAAG,GAAG,CAAC;QACpC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,GAAG,MAAM,CAAC;QAEnC,4DAA4D;QAC5D,iBAAiB,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACpD,iBAAiB,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;QAElD,MAAM,eAAe,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QAC3D,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,MAAM,aAAa,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAAC;QAElD,uEAAuE;QACvE,oEAAoE;QACpE,4EAA4E;QAC5E,wEAAwE;QACxE,MAAM,aAAa,CAAC,UAAU,CAAC;QAE/B,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC/D,CAAC,CAAC,SAAS,CAAC,eAAe,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAC7D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;QAC9D,CAAC,CAAC,SAAS,CAAC,cAAc,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/analyze-action-post-helper.js

@@ -0,0 +1,41 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.run = void 0;
+const core = __importStar(require("@actions/core"));
+const actionsUtil = __importStar(require("./actions-util"));
+const config_utils_1 = require("./config-utils");
+const logging_1 = require("./logging");
+async function run(uploadSarifDebugArtifact) {
+    const logger = (0, logging_1.getActionsLogger)();
+    const config = await (0, config_utils_1.getConfig)(actionsUtil.getTemporaryDirectory(), logger);
+    if (config === undefined) {
+        throw new Error("Config file could not be found at expected location. Did the 'init' action fail to start?");
+    }
+    // Upload Actions SARIF artifacts for debugging
+    if (config === null || config === void 0 ? void 0 : config.debugMode) {
+        core.info("Debug mode is on. Uploading available SARIF files as Actions debugging artifact...");
+        const outputDir = actionsUtil.getRequiredInput("output");
+        await uploadSarifDebugArtifact(config, outputDir);
+    }
+}
+exports.run = run;
+//# sourceMappingURL=analyze-action-post-helper.js.map

lib/analyze-action-post-helper.js.map

@@ -0,0 +1 @@
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lib/analyze-action-post-helper.test.js

@@ -0,0 +1,69 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const sinon = __importStar(require("sinon"));
+const actionsUtil = __importStar(require("./actions-util"));
+const analyzeActionPostHelper = __importStar(require("./analyze-action-post-helper"));
+const configUtils = __importStar(require("./config-utils"));
+const testing_utils_1 = require("./testing-utils");
+const util = __importStar(require("./util"));
+(0, testing_utils_1.setupTests)(ava_1.default);
+(0, ava_1.default)("post: analyze action with debug mode off", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env["RUNNER_TEMP"] = tmpDir;
+        const gitHubVersion = {
+            type: util.GitHubVariant.DOTCOM,
+        };
+        sinon.stub(configUtils, "getConfig").resolves({
+            debugMode: false,
+            gitHubVersion,
+            languages: [],
+            packs: [],
+        });
+        const uploadSarifSpy = sinon.spy();
+        await analyzeActionPostHelper.run(uploadSarifSpy);
+        t.assert(uploadSarifSpy.notCalled);
+    });
+});
+(0, ava_1.default)("post: analyze action with debug mode on", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env["RUNNER_TEMP"] = tmpDir;
+        const gitHubVersion = {
+            type: util.GitHubVariant.DOTCOM,
+        };
+        sinon.stub(configUtils, "getConfig").resolves({
+            debugMode: true,
+            gitHubVersion,
+            languages: [],
+            packs: [],
+        });
+        const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
+        requiredInputStub.withArgs("output").returns("fake-output-dir");
+        const uploadSarifSpy = sinon.spy();
+        await analyzeActionPostHelper.run(uploadSarifSpy);
+        t.assert(uploadSarifSpy.called);
+    });
+});
+//# sourceMappingURL=analyze-action-post-helper.test.js.map

lib/analyze-action-post-helper.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"analyze-action-post-helper.test.js","sourceRoot":"","sources":["../src/analyze-action-post-helper.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,6CAA+B;AAE/B,4DAA8C;AAC9C,sFAAwE;AACxE,4DAA8C;AAC9C,mDAA6C;AAC7C,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,IAAA,aAAI,EAAC,0CAA0C,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC3D,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,GAAG,MAAM,CAAC;QAEpC,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,SAAS,EAAE,KAAK;YAChB,aAAa;YACb,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;SACuB,CAAC,CAAC;QAEpC,MAAM,cAAc,GAAG,KAAK,CAAC,GAAG,EAAE,CAAC;QAEnC,MAAM,uBAAuB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAElD,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC;IACrC,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,yCAAyC,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC1D,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,GAAG,MAAM,CAAC;QAEpC,MAAM,aAAa,GAAuB;YACxC,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM;SAChC,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC5C,SAAS,EAAE,IAAI;YACf,aAAa;YACb,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,EAAE;SACuB,CAAC,CAAC;QAEpC,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC;QACtE,iBAAiB,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAC;QAEhE,MAAM,cAAc,GAAG,KAAK,CAAC,GAAG,EAAE,CAAC;QAEnC,MAAM,uBAAuB,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;QAElD,CAAC,CAAC,MAAM,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC;IAClC,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/analyze-action-post.js

@@ -0,0 +1,40 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+/**
+ * This file is the entry point for the `post:` hook of `analyze-action.yml`.
+ * It will run after the all steps in this job, in reverse order in relation to
+ * other `post:` hooks.
+ */
+const core = __importStar(require("@actions/core"));
+const analyzeActionPostHelper = __importStar(require("./analyze-action-post-helper"));
+const debugArtifacts = __importStar(require("./debug-artifacts"));
+async function runWrapper() {
+    try {
+        await analyzeActionPostHelper.run(debugArtifacts.uploadSarifDebugArtifact);
+    }
+    catch (error) {
+        core.setFailed(`analyze post-action step failed: ${error}`);
+        console.log(error);
+    }
+}
+void runWrapper();
+//# sourceMappingURL=analyze-action-post.js.map

lib/analyze-action-post.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"analyze-action-post.js","sourceRoot":"","sources":["../src/analyze-action-post.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;AAAA;;;;GAIG;AACH,oDAAsC;AAEtC,sFAAwE;AACxE,kEAAoD;AAEpD,KAAK,UAAU,UAAU;IACvB,IAAI;QACF,MAAM,uBAAuB,CAAC,GAAG,CAAC,cAAc,CAAC,wBAAwB,CAAC,CAAC;KAC5E;IAAC,OAAO,KAAK,EAAE;QACd,IAAI,CAAC,SAAS,CAAC,oCAAoC,KAAK,EAAE,CAAC,CAAC;QAC5D,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;KACpB;AACH,CAAC;AAED,KAAK,UAAU,EAAE,CAAC"}

lib/analyze-action.js

@@ -18,25 +18,33 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.runPromise = exports.sendStatusReport = void 0;
 const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-const artifact = __importStar(require("@actions/artifact"));
+const path_1 = __importDefault(require("path"));
+// We need to import `performance` on Node 12
+const perf_hooks_1 = require("perf_hooks");
 const core = __importStar(require("@actions/core"));
 const actionsUtil = __importStar(require("./actions-util"));
 const analyze_1 = require("./analyze");
+const api_client_1 = require("./api-client");
+const autobuild_1 = require("./autobuild");
 const codeql_1 = require("./codeql");
 const config_utils_1 = require("./config-utils");
 const database_upload_1 = require("./database-upload");
+const feature_flags_1 = require("./feature-flags");
+const languages_1 = require("./languages");
 const logging_1 = require("./logging");
 const repository_1 = require("./repository");
+const trap_caching_1 = require("./trap-caching");
 const upload_lib = __importStar(require("./upload-lib"));
 const util = __importStar(require("./util"));
-const util_1 = require("./util");
 // eslint-disable-next-line import/no-commonjs
 const pkg = require("../package.json");
-async function sendStatusReport(startedAt, config, stats, error) {
+async function sendStatusReport(startedAt, config, stats, error, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger) {
     const status = actionsUtil.getActionsStatus(error, stats === null || stats === void 0 ? void 0 : stats.analyze_failure_language);
     const statusReportBase = await actionsUtil.createStatusReportBase("finish", status, startedAt, error === null || error === void 0 ? void 0 : error.message, error === null || error === void 0 ? void 0 : error.stack);
     const statusReport = {
@@ -47,58 +55,115 @@ async function sendStatusReport(startedAt, config, stats, error) {
             }
             : {}),
         ...(stats || {}),
+        ...(dbCreationTimings || {}),
     };
-    await actionsUtil.sendStatusReport(statusReport);
+    if (config && didUploadTrapCaches) {
+        const trapCacheUploadStatusReport = {
+            ...statusReport,
+            trap_cache_upload_duration_ms: Math.round(trapCacheUploadTime || 0),
+            trap_cache_upload_size_bytes: Math.round(await (0, trap_caching_1.getTotalCacheSize)(config.trapCaches, logger)),
+        };
+        await actionsUtil.sendStatusReport(trapCacheUploadStatusReport);
+    }
+    else {
+        await actionsUtil.sendStatusReport(statusReport);
+    }
 }
 exports.sendStatusReport = sendStatusReport;
+// `expect-error` should only be set to a non-false value by the CodeQL Action PR checks.
+function hasBadExpectErrorInput() {
+    return (actionsUtil.getOptionalInput("expect-error") !== "false" &&
+        !util.isInTestMode());
+}
+/**
+ * Returns whether any TRAP files exist under the `db-go` folder,
+ * indicating whether Go extraction has extracted at least one file.
+ */
+function doesGoExtractionOutputExist(config) {
+    const golangDbDirectory = util.getCodeQLDatabasePath(config, languages_1.Language.go);
+    const trapDirectory = path_1.default.join(golangDbDirectory, "trap", languages_1.Language.go);
+    return (fs.existsSync(trapDirectory) &&
+        fs
+            .readdirSync(trapDirectory)
+            .some((fileName) => [
+            ".trap",
+            ".trap.gz",
+            ".trap.br",
+            ".trap.tar.gz",
+            ".trap.tar.br",
+            ".trap.tar",
+        ].some((ext) => fileName.endsWith(ext))));
+}
+/**
+ * When Go extraction reconciliation is enabled, either via the feature flag
+ * or an environment variable, we will attempt to autobuild Go to preserve
+ * compatibility for users who have set up Go using a legacy scanning style
+ * CodeQL workflow, i.e. one without an autobuild step or manual build
+ * steps.
+ *
+ * - We detect whether an autobuild step is present by checking the
+ * `util.DID_AUTOBUILD_GO_ENV_VAR_NAME` environment variable, which is set
+ * when the autobuilder is invoked.
+ * - We approximate whether manual build steps are present by looking at
+ * whether any extraction output already exists for Go.
+ */
+async function runAutobuildIfLegacyGoWorkflow(config, featureFlags, logger) {
+    if (!config.languages.includes(languages_1.Language.go)) {
+        return;
+    }
+    if (!(await util.isGoExtractionReconciliationEnabled(featureFlags))) {
+        logger.debug("Won't run Go autobuild since Go extraction reconciliation is not enabled.");
+        return;
+    }
+    if (process.env[util.DID_AUTOBUILD_GO_ENV_VAR_NAME] === "true") {
+        // This log line is info level while Go extraction reconciliation is in beta.
+        // We will make it debug level once Go extraction reconciliation is GA.
+        logger.info("Won't run Go autobuild since it has already been run.");
+        return;
+    }
+    // This captures whether a user has added manual build steps for Go
+    if (doesGoExtractionOutputExist(config)) {
+        // This log line is info level while Go extraction reconciliation is in beta.
+        // We will make it debug level once Go extraction reconciliation is GA.
+        logger.info("Won't run Go autobuild since at least one file of Go code has already been extracted.");
+        return;
+    }
+    await (0, autobuild_1.runAutobuild)(languages_1.Language.go, config, logger);
+}
 async function run() {
     const startedAt = new Date();
     let uploadResult = undefined;
     let runStats = undefined;
     let config = undefined;
+    let trapCacheUploadTime = undefined;
+    let dbCreationTimings = undefined;
+    let didUploadTrapCaches = false;
     util.initializeEnvironment(util.Mode.actions, pkg.version);
+    await util.checkActionVersion(pkg.version);
+    const logger = (0, logging_1.getActionsLogger)();
     try {
         if (!(await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("finish", "starting", startedAt)))) {
             return;
         }
-        const logger = (0, logging_1.getActionsLogger)();
         config = await (0, config_utils_1.getConfig)(actionsUtil.getTemporaryDirectory(), logger);
         if (config === undefined) {
             throw new Error("Config file could not be found at expected location. Has the 'init' action been called?");
         }
+        if (hasBadExpectErrorInput()) {
+            throw new Error("`expect-error` input parameter is for internal use only. It should only be set by codeql-action or a fork.");
+        }
         await util.enrichEnvironment(util.Mode.actions, await (0, codeql_1.getCodeQL)(config.codeQLCmd));
-        const apiDetails = {
-            auth: actionsUtil.getRequiredInput("token"),
-            url: util.getRequiredEnvParam("GITHUB_SERVER_URL"),
-        };
+        const apiDetails = (0, api_client_1.getApiDetails)();
         const outputDir = actionsUtil.getRequiredInput("output");
         const threads = util.getThreadsFlag(actionsUtil.getOptionalInput("threads") || process.env["CODEQL_THREADS"], logger);
         const memory = util.getMemoryFlag(actionsUtil.getOptionalInput("ram") || process.env["CODEQL_RAM"]);
         const repositoryNwo = (0, repository_1.parseRepositoryNwo)(util.getRequiredEnvParam("GITHUB_REPOSITORY"));
-        await (0, analyze_1.runFinalize)(outputDir, threads, memory, config, logger);
+        const gitHubVersion = await (0, api_client_1.getGitHubVersionActionsOnly)();
+        const featureFlags = new feature_flags_1.GitHubFeatureFlags(gitHubVersion, apiDetails, repositoryNwo, logger);
+        await runAutobuildIfLegacyGoWorkflow(config, featureFlags, logger);
+        dbCreationTimings = await (0, analyze_1.runFinalize)(outputDir, threads, memory, config, logger, featureFlags);
         if (actionsUtil.getRequiredInput("skip-queries") !== "true") {
-            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, actionsUtil.getOptionalInput("category"), config, logger);
-            if (config.debugMode) {
-                // Upload the SARIF files as an Actions artifact for debugging
-                await uploadDebugArtifacts(config.languages.map((lang) => path.resolve(outputDir, `${lang}.sarif`)), outputDir, config.debugArtifactName);
-            }
-        }
-        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-        if (config.debugMode) {
-            // Upload the logs as an Actions artifact for debugging
-            const toUpload = [];
-            for (const language of config.languages) {
-                toUpload.push(...listFolder(path.resolve(util.getCodeQLDatabasePath(config, language), "log")));
-            }
-            if (await (0, util_1.codeQlVersionAbove)(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING)) {
-                // Multilanguage tracing: there are additional logs in the root of the cluster
-                toUpload.push(...listFolder(path.resolve(config.dbLocation, "log")));
-            }
-            await uploadDebugArtifacts(toUpload, config.dbLocation, config.debugArtifactName);
-            if (!(await (0, util_1.codeQlVersionAbove)(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING))) {
-                // Before multi-language tracing, we wrote a compound-build-tracer.log in the temp dir
-                await uploadDebugArtifacts([path.resolve(config.tempDir, "compound-build-tracer.log")], config.tempDir, config.debugArtifactName);
-            }
+            runStats = await (0, analyze_1.runQueries)(outputDir, memory, util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), threads, actionsUtil.getOptionalInput("category"), config, logger, featureFlags);
         }
         if (actionsUtil.getOptionalInput("cleanup-level") !== "none") {
             await (0, analyze_1.runCleanup)(config, actionsUtil.getOptionalInput("cleanup-level") || "brutal", logger);
@@ -117,95 +182,53 @@ async function run() {
         }
         // Possibly upload the database bundles for remote queries
         await (0, database_upload_1.uploadDatabases)(repositoryNwo, config, apiDetails, logger);
-        if (uploadResult !== undefined &&
+        // Possibly upload the TRAP caches for later re-use
+        const trapCacheUploadStartTime = perf_hooks_1.performance.now();
+        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+        didUploadTrapCaches = await (0, trap_caching_1.uploadTrapCaches)(codeql, config, logger);
+        trapCacheUploadTime = perf_hooks_1.performance.now() - trapCacheUploadStartTime;
+        // We don't upload results in test mode, so don't wait for processing
+        if (util.isInTestMode()) {
+            core.debug("In test mode. Waiting for processing is disabled.");
+        }
+        else if (uploadResult !== undefined &&
             actionsUtil.getRequiredInput("wait-for-processing") === "true") {
             await upload_lib.waitForProcessing((0, repository_1.parseRepositoryNwo)(util.getRequiredEnvParam("GITHUB_REPOSITORY")), uploadResult.sarifID, apiDetails, (0, logging_1.getActionsLogger)());
         }
+        // If we did not throw an error yet here, but we expect one, throw it.
+        if (actionsUtil.getOptionalInput("expect-error") === "true") {
+            core.setFailed(`expect-error input was set to true but no error was thrown.`);
+        }
     }
     catch (origError) {
         const error = origError instanceof Error ? origError : new Error(String(origError));
-        core.setFailed(error.message);
+        if (actionsUtil.getOptionalInput("expect-error") !== "true" ||
+            hasBadExpectErrorInput()) {
+            core.setFailed(error.message);
+        }
         console.log(error);
         if (error instanceof analyze_1.CodeQLAnalysisError) {
             const stats = { ...error.queriesStatusReport };
-            await sendStatusReport(startedAt, config, stats, error);
+            await sendStatusReport(startedAt, config, stats, error, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger);
         }
         else {
-            await sendStatusReport(startedAt, config, undefined, error);
+            await sendStatusReport(startedAt, config, undefined, error, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger);
         }
         return;
     }
-    finally {
-        if (config !== undefined && config.debugMode) {
-            try {
-                // Upload the database bundles as an Actions artifact for debugging
-                const toUpload = [];
-                for (const language of config.languages) {
-                    toUpload.push(await (0, util_1.bundleDb)(config, language, await (0, codeql_1.getCodeQL)(config.codeQLCmd), `${config.debugDatabaseName}-${language}`));
-                }
-                await uploadDebugArtifacts(toUpload, config.dbLocation, config.debugArtifactName);
-            }
-            catch (error) {
-                console.log(`Failed to upload database debug bundles: ${error}`);
-            }
-        }
-        if (core.isDebug() && config !== undefined) {
-            core.info("Debug mode is on. Printing CodeQL debug logs...");
-            for (const language of config.languages) {
-                const databaseDirectory = util.getCodeQLDatabasePath(config, language);
-                const logsDirectory = path.join(databaseDirectory, "log");
-                const walkLogFiles = (dir) => {
-                    const entries = fs.readdirSync(dir, { withFileTypes: true });
-                    for (const entry of entries) {
-                        if (entry.isFile()) {
-                            core.startGroup(`CodeQL Debug Logs - ${language} - ${entry.name}`);
-                            process.stdout.write(fs.readFileSync(path.resolve(dir, entry.name)));
-                            core.endGroup();
-                        }
-                        else if (entry.isDirectory()) {
-                            walkLogFiles(path.resolve(dir, entry.name));
-                        }
-                    }
-                };
-                walkLogFiles(logsDirectory);
-            }
-        }
-    }
     if (runStats && uploadResult) {
         await sendStatusReport(startedAt, config, {
             ...runStats,
             ...uploadResult.statusReport,
-        });
+        }, undefined, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger);
     }
     else if (runStats) {
-        await sendStatusReport(startedAt, config, { ...runStats });
+        await sendStatusReport(startedAt, config, { ...runStats }, undefined, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger);
     }
     else {
-        await sendStatusReport(startedAt, config, undefined);
+        await sendStatusReport(startedAt, config, undefined, undefined, trapCacheUploadTime, dbCreationTimings, didUploadTrapCaches, logger);
     }
 }
-async function uploadDebugArtifacts(toUpload, rootDir, artifactName) {
-    let suffix = "";
-    const matrix = actionsUtil.getRequiredInput("matrix");
-    if (matrix !== undefined && matrix !== "null") {
-        for (const entry of Object.entries(JSON.parse(matrix)).sort())
-            suffix += `-${entry[1]}`;
-    }
-    await artifact.create().uploadArtifact(actionsUtil.sanitizeArifactName(`${artifactName}${suffix}`), toUpload.map((file) => path.normalize(file)), path.normalize(rootDir));
-}
-function listFolder(dir) {
-    const entries = fs.readdirSync(dir, { withFileTypes: true });
-    const files = [];
-    for (const entry of entries) {
-        if (entry.isFile()) {
-            files.push(path.resolve(dir, entry.name));
-        }
-        else if (entry.isDirectory()) {
-            files.push(...listFolder(path.resolve(dir, entry.name)));
-        }
-    }
-    return files;
-}
 exports.runPromise = run();
 async function runWrapper() {
     try {

lib/analyze.js

@@ -18,14 +18,20 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.runCleanup = exports.runFinalize = exports.runQueries = exports.CodeQLAnalysisError = void 0;
+exports.validateQueryFilters = exports.runCleanup = exports.runFinalize = exports.createQuerySuiteContents = exports.convertPackToQuerySuiteEntry = exports.runQueries = exports.dbIsFinalized = exports.createdDBForScannedLanguages = exports.CodeQLAnalysisError = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+const perf_hooks_1 = require("perf_hooks"); // We need to import `performance` on Node 12
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const del_1 = __importDefault(require("del"));
 const yaml = __importStar(require("js-yaml"));
 const analysisPaths = __importStar(require("./analysis-paths"));
 const codeql_1 = require("./codeql");
+const configUtils = __importStar(require("./config-utils"));
 const count_loc_1 = require("./count-loc");
 const languages_1 = require("./languages");
 const sharedEnv = __importStar(require("./shared-environment"));
@@ -64,23 +70,23 @@ async function setupPythonExtractor(logger) {
     logger.info(`Setting LGTM_PYTHON_SETUP_VERSION=${output}`);
     process.env["LGTM_PYTHON_SETUP_VERSION"] = output;
 }
-async function createdDBForScannedLanguages(config, logger) {
+async function createdDBForScannedLanguages(codeql, config, logger, featureFlags) {
     // Insert the LGTM_INDEX_X env vars at this point so they are set when
     // we extract any scanned languages.
     analysisPaths.includeAndExcludeAnalysisPaths(config);
-    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
     for (const language of config.languages) {
-        if ((0, languages_1.isScannedLanguage)(language) &&
+        if ((0, languages_1.isScannedLanguage)(language, await util.isGoExtractionReconciliationEnabled(featureFlags), logger) &&
             !dbIsFinalized(config, language, logger)) {
             logger.startGroup(`Extracting ${language}`);
             if (language === languages_1.Language.python) {
                 await setupPythonExtractor(logger);
             }
-            await codeql.extractScannedLanguage(util.getCodeQLDatabasePath(config, language), language);
+            await codeql.extractScannedLanguage(config, language);
             logger.endGroup();
         }
     }
 }
+exports.createdDBForScannedLanguages = createdDBForScannedLanguages;
 function dbIsFinalized(config, language, logger) {
     const dbPath = util.getCodeQLDatabasePath(config, language);
     try {
@@ -92,9 +98,13 @@ function dbIsFinalized(config, language, logger) {
         return false;
     }
 }
-async function finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger) {
-    await createdDBForScannedLanguages(config, logger);
+exports.dbIsFinalized = dbIsFinalized;
+async function finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger, featureFlags) {
     const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+    const extractionStart = perf_hooks_1.performance.now();
+    await createdDBForScannedLanguages(codeql, config, logger, featureFlags);
+    const extractionTime = perf_hooks_1.performance.now() - extractionStart;
+    const trapImportStart = perf_hooks_1.performance.now();
     for (const language of config.languages) {
         if (dbIsFinalized(config, language, logger)) {
             logger.info(`There is already a finalized database for ${language} at the location where the CodeQL Action places databases, so we did not create one.`);
@@ -105,16 +115,19 @@ async function finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger)
             logger.endGroup();
         }
     }
+    const trapImportTime = perf_hooks_1.performance.now() - trapImportStart;
+    return {
+        scanned_language_extraction_duration_ms: Math.round(extractionTime),
+        trap_import_duration_ms: Math.round(trapImportTime),
+    };
 }
 // Runs queries and creates sarif files in the given folder
-async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, automationDetailsId, config, logger) {
+async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, automationDetailsId, config, logger, featureFlags) {
     const statusReport = {};
     let locPromise = Promise.resolve({});
     const cliCanCountBaseline = await cliCanCountLoC();
-    const debugMode = process.env["INTERNAL_CODEQL_ACTION_DEBUG_LOC"] ||
-        process.env["ACTIONS_RUNNER_DEBUG"] ||
-        process.env["ACTIONS_STEP_DEBUG"];
-    if (!cliCanCountBaseline || debugMode) {
+    const countLocDebugMode = process.env["INTERNAL_CODEQL_ACTION_DEBUG_LOC"] || config.debugMode;
+    if (!cliCanCountBaseline || countLocDebugMode) {
         // count the number of lines in the background
         locPromise = (0, count_loc_1.countLoc)(path.resolve(), 
         // config.paths specifies external directories. the current
@@ -122,8 +135,11 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
         // that here.
         config.paths, config.pathsIgnore, config.languages, logger);
     }
+    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+    await util.logCodeScanningConfigInCli(codeql, featureFlags, logger);
     for (const language of config.languages) {
         const queries = config.queries[language];
+        const queryFilters = validateQueryFilters(config.originalUserInput["query-filters"]);
         const packsWithVersion = config.packs[language] || [];
         const hasBuiltinQueries = (queries === null || queries === void 0 ? void 0 : queries.builtin.length) > 0;
         const hasCustomQueries = (queries === null || queries === void 0 ? void 0 : queries.custom.length) > 0;
@@ -132,55 +148,72 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
             throw new Error(`Unable to analyse ${language} as no queries were selected for this language`);
         }
         try {
-            if (hasPackWithCustomQueries) {
-                logger.info("Performing analysis with custom CodeQL Packs.");
-                logger.startGroup(`Downloading custom packs for ${language}`);
-                const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-                const results = await codeql.packDownload(packsWithVersion);
-                logger.info(`Downloaded packs: ${results.packs
-                    .map((r) => `${r.name}@${r.version || "latest"}`)
-                    .join(", ")}`);
-                logger.endGroup();
-            }
-            logger.startGroup(`Running queries for ${language}`);
-            const querySuitePaths = [];
-            if (queries["builtin"].length > 0) {
+            if (await util.useCodeScanningConfigInCli(codeql, featureFlags)) {
+                // If we are using the codescanning config in the CLI,
+                // much of the work needed to generate the query suites
+                // is done in the CLI. We just need to make a single
+                // call to run all the queries for each language and
+                // another to interpret the results.
+                logger.startGroup(`Running queries for ${language}`);
                 const startTimeBuiltIn = new Date().getTime();
-                querySuitePaths.push(await runQueryGroup(language, "builtin", createQuerySuiteContents(queries["builtin"]), undefined));
+                await runQueryGroup(language, "all", undefined, undefined);
+                // TODO should not be using `builtin` here. We should be using `all` instead.
+                // The status report does not support `all` yet.
                 statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
                     new Date().getTime() - startTimeBuiltIn;
+                logger.startGroup(`Interpreting results for ${language}`);
+                const startTimeInterpretResults = new Date().getTime();
+                const sarifFile = path.join(sarifFolder, `${language}.sarif`);
+                const analysisSummary = await runInterpretResults(language, undefined, sarifFile, config.debugMode);
+                statusReport[`interpret_results_${language}_duration_ms`] =
+                    new Date().getTime() - startTimeInterpretResults;
+                logger.endGroup();
+                logger.info(analysisSummary);
             }
-            const startTimeCustom = new Date().getTime();
-            let ranCustom = false;
-            for (let i = 0; i < queries["custom"].length; ++i) {
-                if (queries["custom"][i].queries.length > 0) {
-                    querySuitePaths.push(await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries["custom"][i].queries), queries["custom"][i].searchPath));
+            else {
+                logger.startGroup(`Running queries for ${language}`);
+                const querySuitePaths = [];
+                if (queries["builtin"].length > 0) {
+                    const startTimeBuiltIn = new Date().getTime();
+                    querySuitePaths.push((await runQueryGroup(language, "builtin", createQuerySuiteContents(queries["builtin"], queryFilters), undefined)));
+                    statusReport[`analyze_builtin_queries_${language}_duration_ms`] =
+                        new Date().getTime() - startTimeBuiltIn;
+                }
+                const startTimeCustom = new Date().getTime();
+                let ranCustom = false;
+                for (let i = 0; i < queries["custom"].length; ++i) {
+                    if (queries["custom"][i].queries.length > 0) {
+                        querySuitePaths.push((await runQueryGroup(language, `custom-${i}`, createQuerySuiteContents(queries["custom"][i].queries, queryFilters), queries["custom"][i].searchPath)));
+                        ranCustom = true;
+                    }
+                }
+                if (packsWithVersion.length > 0) {
+                    querySuitePaths.push(await runQueryPacks(language, "packs", packsWithVersion, queryFilters));
                     ranCustom = true;
                 }
+                if (ranCustom) {
+                    statusReport[`analyze_custom_queries_${language}_duration_ms`] =
+                        new Date().getTime() - startTimeCustom;
+                }
+                logger.endGroup();
+                logger.startGroup(`Interpreting results for ${language}`);
+                const startTimeInterpretResults = new Date().getTime();
+                const sarifFile = path.join(sarifFolder, `${language}.sarif`);
+                const analysisSummary = await runInterpretResults(language, querySuitePaths, sarifFile, config.debugMode);
+                if (!cliCanCountBaseline) {
+                    await injectLinesOfCode(sarifFile, language, locPromise);
+                }
+                statusReport[`interpret_results_${language}_duration_ms`] =
+                    new Date().getTime() - startTimeInterpretResults;
+                logger.endGroup();
+                logger.info(analysisSummary);
             }
-            if (packsWithVersion.length > 0) {
-                querySuitePaths.push(await runQueryGroup(language, "packs", createPackSuiteContents(packsWithVersion), undefined));
-                ranCustom = true;
-            }
-            if (ranCustom) {
-                statusReport[`analyze_custom_queries_${language}_duration_ms`] =
-                    new Date().getTime() - startTimeCustom;
-            }
-            logger.endGroup();
-            logger.startGroup(`Interpreting results for ${language}`);
-            const startTimeInterpretResults = new Date().getTime();
-            const sarifFile = path.join(sarifFolder, `${language}.sarif`);
-            const analysisSummary = await runInterpretResults(language, querySuitePaths, sarifFile);
-            if (!cliCanCountBaseline)
-                await injectLinesOfCode(sarifFile, language, locPromise);
-            statusReport[`interpret_results_${language}_duration_ms`] =
-                new Date().getTime() - startTimeInterpretResults;
-            logger.endGroup();
-            logger.info(analysisSummary);
-            if (!cliCanCountBaseline || debugMode)
+            if (!cliCanCountBaseline || countLocDebugMode) {
                 printLinesOfCodeSummary(logger, language, await locPromise);
-            if (cliCanCountBaseline)
+            }
+            if (cliCanCountBaseline) {
                 logger.info(await runPrintLinesOfCode(language));
+            }
         }
         catch (e) {
             logger.info(String(e));
@@ -192,63 +225,69 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
         }
     }
     return statusReport;
-    async function runInterpretResults(language, queries, sarifFile) {
+    async function runInterpretResults(language, queries, sarifFile, enableDebugLogging) {
         const databasePath = util.getCodeQLDatabasePath(config, language);
-        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-        return await codeql.databaseInterpretResults(databasePath, queries, sarifFile, addSnippetsFlag, threadsFlag, automationDetailsId);
+        return await codeql.databaseInterpretResults(databasePath, queries, sarifFile, addSnippetsFlag, threadsFlag, enableDebugLogging ? "-vv" : "-v", automationDetailsId);
     }
     async function cliCanCountLoC() {
         return await util.codeQlVersionAbove(await (0, codeql_1.getCodeQL)(config.codeQLCmd), codeql_1.CODEQL_VERSION_COUNTS_LINES);
     }
     async function runPrintLinesOfCode(language) {
         const databasePath = util.getCodeQLDatabasePath(config, language);
-        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
         return await codeql.databasePrintBaseline(databasePath);
     }
     async function runQueryGroup(language, type, querySuiteContents, searchPath) {
         const databasePath = util.getCodeQLDatabasePath(config, language);
         // Pass the queries to codeql using a file instead of using the command
         // line to avoid command line length restrictions, particularly on windows.
-        const querySuitePath = `${databasePath}-queries-${type}.qls`;
-        fs.writeFileSync(querySuitePath, querySuiteContents);
-        logger.debug(`Query suite file for ${language}-${type}...\n${querySuiteContents}`);
-        const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+        const querySuitePath = querySuiteContents
+            ? `${databasePath}-queries-${type}.qls`
+            : undefined;
+        if (querySuiteContents && querySuitePath) {
+            fs.writeFileSync(querySuitePath, querySuiteContents);
+            logger.debug(`Query suite file for ${language}-${type}...\n${querySuiteContents}`);
+        }
         await codeql.databaseRunQueries(databasePath, searchPath, querySuitePath, memoryFlag, threadsFlag);
         logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
         return querySuitePath;
     }
+    async function runQueryPacks(language, type, packs, queryFilters) {
+        const databasePath = util.getCodeQLDatabasePath(config, language);
+        for (const pack of packs) {
+            logger.debug(`Running query pack for ${language}-${type}: ${pack}`);
+        }
+        // combine the list of packs into a query suite in order to run them all simultaneously.
+        const querySuite = packs.map(convertPackToQuerySuiteEntry).concat(queryFilters);
+        const querySuitePath = `${databasePath}-queries-${type}.qls`;
+        fs.writeFileSync(querySuitePath, yaml.dump(querySuite));
+        logger.debug(`BQRS results produced for ${language} (queries: ${type})"`);
+        await codeql.databaseRunQueries(databasePath, undefined, querySuitePath, memoryFlag, threadsFlag);
+        return querySuitePath;
+    }
 }
 exports.runQueries = runQueries;
-function createQuerySuiteContents(queries) {
-    return queries.map((q) => `- query: ${q}`).join("\n");
+function convertPackToQuerySuiteEntry(packStr) {
+    var _a, _b, _c, _d;
+    const pack = configUtils.parsePacksSpecification(packStr);
+    return {
+        qlpack: !pack.path ? pack.name : undefined,
+        from: pack.path ? pack.name : undefined,
+        version: pack.version,
+        query: ((_a = pack.path) === null || _a === void 0 ? void 0 : _a.endsWith(".ql")) ? pack.path : undefined,
+        queries: !((_b = pack.path) === null || _b === void 0 ? void 0 : _b.endsWith(".ql")) && !((_c = pack.path) === null || _c === void 0 ? void 0 : _c.endsWith(".qls"))
+            ? pack.path
+            : undefined,
+        apply: ((_d = pack.path) === null || _d === void 0 ? void 0 : _d.endsWith(".qls")) ? pack.path : undefined,
+    };
 }
-function createPackSuiteContents(packsWithVersion) {
-    return packsWithVersion.map(packWithVersionToQuerySuiteEntry).join("\n");
+exports.convertPackToQuerySuiteEntry = convertPackToQuerySuiteEntry;
+function createQuerySuiteContents(queries, queryFilters) {
+    return yaml.dump(queries.map((q) => ({ query: q })).concat(queryFilters));
 }
-function packWithVersionToQuerySuiteEntry(pack) {
-    let text = `- qlpack: ${pack.packName}`;
-    if (pack.version) {
-        text += `\n  version: ${pack.version}`;
-    }
-    return text;
-}
-async function runFinalize(outputDir, threadsFlag, memoryFlag, config, logger) {
-    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
-    if (await util.codeQlVersionAbove(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING)) {
-        // Delete variables as specified by the end-tracing script
-        await (0, tracer_config_1.endTracingForCluster)(config);
-    }
-    else {
-        // Delete the tracer config env var to avoid tracing ourselves
-        delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
-    }
-    // After switching to Node16, this entire block can be replaced with `await fs.promises.rm(outputDir, { recursive: true, force: true });`.
+exports.createQuerySuiteContents = createQuerySuiteContents;
+async function runFinalize(outputDir, threadsFlag, memoryFlag, config, logger, featureFlags) {
     try {
-        await fs.promises.rmdir(outputDir, {
-            recursive: true,
-            maxRetries: 5,
-            retryDelay: 2000,
-        });
+        await (0, del_1.default)(outputDir, { force: true });
     }
     catch (error) {
         if ((error === null || error === void 0 ? void 0 : error.code) !== "ENOENT") {
@@ -256,7 +295,22 @@ async function runFinalize(outputDir, threadsFlag, memoryFlag, config, logger) {
         }
     }
     await fs.promises.mkdir(outputDir, { recursive: true });
-    await finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger);
+    const timings = await finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger, featureFlags);
+    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+    // WARNING: This does not _really_ end tracing, as the tracer will restore its
+    // critical environment variables and it'll still be active for all processes
+    // launched from this build step.
+    // However, it will stop tracing for all steps past the codeql-action/analyze
+    // step.
+    if (await util.codeQlVersionAbove(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING)) {
+        // Delete variables as specified by the end-tracing script
+        await (0, tracer_config_1.endTracingForCluster)(config, await util.isGoExtractionReconciliationEnabled(featureFlags), logger);
+    }
+    else {
+        // Delete the tracer config env var to avoid tracing ourselves
+        delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+    }
+    return timings;
 }
 exports.runFinalize = runFinalize;
 async function runCleanup(config, cleanupLevel, logger) {
@@ -297,4 +351,28 @@ function printLinesOfCodeSummary(logger, language, lineCounts) {
         logger.info(`Counted a baseline of ${lineCounts[language]} lines of code for ${language}.`);
     }
 }
+// exported for testing
+function validateQueryFilters(queryFilters) {
+    if (!queryFilters) {
+        return [];
+    }
+    if (!Array.isArray(queryFilters)) {
+        throw new Error(`Query filters must be an array of "include" or "exclude" entries. Found ${typeof queryFilters}`);
+    }
+    const errors = [];
+    for (const qf of queryFilters) {
+        const keys = Object.keys(qf);
+        if (keys.length !== 1) {
+            errors.push(`Query filter must have exactly one key: ${JSON.stringify(qf)}`);
+        }
+        if (!["exclude", "include"].includes(keys[0])) {
+            errors.push(`Only "include" or "exclude" filters are allowed:\n${JSON.stringify(qf)}`);
+        }
+    }
+    if (errors.length) {
+        throw new Error(`Invalid query filter.\n${errors.join("\n")}`);
+    }
+    return queryFilters;
+}
+exports.validateQueryFilters = validateQueryFilters;
 //# sourceMappingURL=analyze.js.map

lib/analyze.test.js

@@ -26,11 +26,11 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const ava_1 = __importDefault(require("ava"));
 const yaml = __importStar(require("js-yaml"));
-const semver_1 = require("semver");
 const sinon = __importStar(require("sinon"));
 const analyze_1 = require("./analyze");
 const codeql_1 = require("./codeql");
 const count = __importStar(require("./count-loc"));
+const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
 const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
@@ -53,18 +53,8 @@ const util = __importStar(require("./util"));
         const addSnippetsFlag = "";
         const threadsFlag = "";
         const packs = {
-            [languages_1.Language.cpp]: [
-                {
-                    packName: "a/b",
-                    version: (0, semver_1.clean)("1.0.0"),
-                },
-            ],
-            [languages_1.Language.java]: [
-                {
-                    packName: "c/d",
-                    version: (0, semver_1.clean)("2.0.0"),
-                },
-            ],
+            [languages_1.Language.cpp]: ["a/b@1.0.0"],
+            [languages_1.Language.java]: ["c/d@2.0.0"],
         };
         for (const language of Object.values(languages_1.Language)) {
             (0, codeql_1.setCodeQL)({
@@ -118,7 +108,6 @@ const util = __importStar(require("./util"));
                 paths: [],
                 originalUserInput: {},
                 tempDir: tmpDir,
-                toolCacheDir: tmpDir,
                 codeQLCmd: "",
                 gitHubVersion: {
                     type: util.GitHubVariant.DOTCOM,
@@ -128,6 +117,13 @@ const util = __importStar(require("./util"));
                 debugMode: false,
                 debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
                 debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+                augmentationProperties: {
+                    injectedMlQueries: false,
+                    packsInputCombines: false,
+                    queriesInputCombines: false,
+                },
+                trapCaches: {},
+                trapCacheDownloadTime: 0,
             };
             fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
                 recursive: true,
@@ -136,7 +132,7 @@ const util = __importStar(require("./util"));
                 builtin: ["foo.ql"],
                 custom: [],
             };
-            const builtinStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true));
+            const builtinStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, feature_flags_1.createFeatureFlags)([]));
             const hasPacks = language in packs;
             const statusReportKeys = Object.keys(builtinStatusReport).sort();
             if (hasPacks) {
@@ -162,7 +158,7 @@ const util = __importStar(require("./util"));
                     },
                 ],
             };
-            const customStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true));
+            const customStatusReport = await (0, analyze_1.runQueries)(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, undefined, config, (0, logging_1.getRunnerLogger)(true), (0, feature_flags_1.createFeatureFlags)([]));
             t.deepEqual(Object.keys(customStatusReport).length, 2);
             t.true(`analyze_custom_queries_${language}_duration_ms` in customStatusReport);
             const expectedSearchPathsUsed = hasPacks
@@ -208,32 +204,10 @@ const util = __importStar(require("./util"));
                 query: "bar.ql",
             },
         ];
-        const qlsPackContentCpp = [
-            {
-                qlpack: "a/b",
-                version: "1.0.0",
-            },
-        ];
-        const qlsPackContentJava = [
-            {
-                qlpack: "c/d",
-                version: "2.0.0",
-            },
-        ];
         for (const lang of Object.values(languages_1.Language)) {
             t.deepEqual(readContents(`${lang}-queries-builtin.qls`), qlsContent);
             t.deepEqual(readContents(`${lang}-queries-custom-0.qls`), qlsContent);
             t.deepEqual(readContents(`${lang}-queries-custom-1.qls`), qlsContent2);
-            const packSuiteName = `${lang}-queries-packs.qls`;
-            if (lang === languages_1.Language.cpp) {
-                t.deepEqual(readContents(packSuiteName), qlsPackContentCpp);
-            }
-            else if (lang === languages_1.Language.java) {
-                t.deepEqual(readContents(packSuiteName), qlsPackContentJava);
-            }
-            else {
-                t.false(fs.existsSync(path.join(tmpDir, "codeql_databases", packSuiteName)));
-            }
         }
         function readContents(name) {
             const x = fs.readFileSync(path.join(tmpDir, "codeql_databases", name), "utf8");
@@ -242,4 +216,141 @@ const util = __importStar(require("./util"));
         }
     }
 });
+(0, ava_1.default)("validateQueryFilters", (t) => {
+    t.notThrows(() => (0, analyze_1.validateQueryFilters)([]));
+    t.notThrows(() => (0, analyze_1.validateQueryFilters)(undefined));
+    t.notThrows(() => {
+        return (0, analyze_1.validateQueryFilters)([
+            {
+                exclude: {
+                    "problem.severity": "recommendation",
+                },
+            },
+            {
+                exclude: {
+                    "tags contain": ["foo", "bar"],
+                },
+            },
+            {
+                include: {
+                    "problem.severity": "something-to-think-about",
+                },
+            },
+            {
+                include: {
+                    "tags contain": ["baz", "bop"],
+                },
+            },
+        ]);
+    });
+    t.throws(() => {
+        return (0, analyze_1.validateQueryFilters)([
+            {
+                exclude: {
+                    "tags contain": ["foo", "bar"],
+                },
+                include: {
+                    "tags contain": ["baz", "bop"],
+                },
+            },
+        ]);
+    }, { message: /Query filter must have exactly one key/ });
+    t.throws(() => {
+        return (0, analyze_1.validateQueryFilters)([{ xxx: "foo" }]);
+    }, { message: /Only "include" or "exclude" filters are allowed/ });
+    t.throws(() => {
+        return (0, analyze_1.validateQueryFilters)({ exclude: "foo" });
+    }, {
+        message: /Query filters must be an array of "include" or "exclude" entries/,
+    });
+});
+const convertPackToQuerySuiteEntryMacro = ava_1.default.macro({
+    exec: (t, packSpec, suiteEntry) => t.deepEqual((0, analyze_1.convertPackToQuerySuiteEntry)(packSpec), suiteEntry),
+    title: (_providedTitle, packSpec) => `Query Suite Entry: ${packSpec}`,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b", {
+    qlpack: "a/b",
+    from: undefined,
+    version: undefined,
+    query: undefined,
+    queries: undefined,
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3", {
+    qlpack: "a/b",
+    from: undefined,
+    version: "~1.2.3",
+    query: undefined,
+    queries: undefined,
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path", {
+    qlpack: undefined,
+    from: "a/b",
+    version: undefined,
+    query: undefined,
+    queries: "my/path",
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path", {
+    qlpack: undefined,
+    from: "a/b",
+    version: "~1.2.3",
+    query: undefined,
+    queries: "my/path",
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path/query.ql", {
+    qlpack: undefined,
+    from: "a/b",
+    version: undefined,
+    query: "my/path/query.ql",
+    queries: undefined,
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path/query.ql", {
+    qlpack: undefined,
+    from: "a/b",
+    version: "~1.2.3",
+    query: "my/path/query.ql",
+    queries: undefined,
+    apply: undefined,
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b:my/path/suite.qls", {
+    qlpack: undefined,
+    from: "a/b",
+    version: undefined,
+    query: undefined,
+    queries: undefined,
+    apply: "my/path/suite.qls",
+});
+(0, ava_1.default)(convertPackToQuerySuiteEntryMacro, "a/b@~1.2.3:my/path/suite.qls", {
+    qlpack: undefined,
+    from: "a/b",
+    version: "~1.2.3",
+    query: undefined,
+    queries: undefined,
+    apply: "my/path/suite.qls",
+});
+(0, ava_1.default)("convertPackToQuerySuiteEntry Failure", (t) => {
+    t.throws(() => (0, analyze_1.convertPackToQuerySuiteEntry)("this-is-not-a-pack"));
+});
+(0, ava_1.default)("createQuerySuiteContents", (t) => {
+    const yamlResult = (0, analyze_1.createQuerySuiteContents)(["query1.ql", "query2.ql"], [
+        {
+            exclude: { "problem.severity": "recommendation" },
+        },
+        {
+            include: { "problem.severity": "recommendation" },
+        },
+    ]);
+    const expected = `- query: query1.ql
+- query: query2.ql
+- exclude:
+    problem.severity: recommendation
+- include:
+    problem.severity: recommendation
+`;
+    t.deepEqual(yamlResult, expected);
+});
 //# sourceMappingURL=analyze.test.js.map

lib/api-client.js

@@ -22,7 +22,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getGitHubVersionActionsOnly = exports.getActionsApiClient = exports.getApiClient = exports.DisallowedAPIVersionReason = void 0;
+exports.getGitHubVersionActionsOnly = exports.getActionsApiClient = exports.getApiDetails = exports.getApiClient = exports.DisallowedAPIVersionReason = void 0;
 const path = __importStar(require("path"));
 const githubUtils = __importStar(require("@actions/github/lib/utils"));
 const retry = __importStar(require("@octokit/plugin-retry"));
@@ -40,14 +40,16 @@ var DisallowedAPIVersionReason;
 const getApiClient = function (apiDetails, { allowExternal = false } = {}) {
     const auth = (allowExternal && apiDetails.externalRepoAuth) || apiDetails.auth;
     const retryingOctokit = githubUtils.GitHub.plugin(retry.retry);
+    const apiURL = apiDetails.apiURL || deriveApiUrl(apiDetails.url);
     return new retryingOctokit(githubUtils.getOctokitOptions(auth, {
-        baseUrl: getApiUrl(apiDetails.url),
+        baseUrl: apiURL,
         userAgent: `CodeQL-${(0, util_1.getMode)()}/${pkg.version}`,
         log: (0, console_log_level_1.default)({ level: "debug" }),
     }));
 };
 exports.getApiClient = getApiClient;
-function getApiUrl(githubUrl) {
+// Once the runner is deleted, this can also be removed since the GitHub API URL is always available in an environment variable on Actions.
+function deriveApiUrl(githubUrl) {
     const url = new URL(githubUrl);
     // If we detect this is trying to connect to github.com
     // then return with a fixed canonical URL.
@@ -62,8 +64,10 @@ function getApiDetails() {
     return {
         auth: (0, actions_util_1.getRequiredInput)("token"),
         url: (0, util_1.getRequiredEnvParam)("GITHUB_SERVER_URL"),
+        apiURL: (0, util_1.getRequiredEnvParam)("GITHUB_API_URL"),
     };
 }
+exports.getApiDetails = getApiDetails;
 // Temporary function to aid in the transition to running on and off of github actions.
 // Once all code has been converted this function should be removed or made canonical
 // and called only from the action entrypoints.

lib/api-client.js.map

@@ -1 +1 @@
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+{"version":3,"file":"api-client.js","sourceRoot":"","sources":["../src/api-client.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,2CAA6B;AAE7B,uEAAyD;AACzD,6DAA+C;AAC/C,0EAAgD;AAEhD,iDAAkD;AAClD,6CAA+B;AAC/B,iCAAqE;AAErE,8CAA8C;AAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC;AAEvC,IAAY,0BAGX;AAHD,WAAY,0BAA0B;IACpC,+FAAc,CAAA;IACd,+FAAc,CAAA;AAChB,CAAC,EAHW,0BAA0B,GAA1B,kCAA0B,KAA1B,kCAA0B,QAGrC;AAiBM,MAAM,YAAY,GAAG,UAC1B,UAAoC,EACpC,EAAE,aAAa,GAAG,KAAK,EAAE,GAAG,EAAE;IAE9B,MAAM,IAAI,GACR,CAAC,aAAa,IAAI,UAAU,CAAC,gBAAgB,CAAC,IAAI,UAAU,CAAC,IAAI,CAAC;IACpE,MAAM,eAAe,GAAG,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAC/D,MAAM,MAAM,GAAG,UAAU,CAAC,MAAM,IAAI,YAAY,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;IACjE,OAAO,IAAI,eAAe,CACxB,WAAW,CAAC,iBAAiB,CAAC,IAAI,EAAE;QAClC,OAAO,EAAE,MAAM;QACf,SAAS,EAAE,UAAU,IAAA,cAAO,GAAE,IAAI,GAAG,CAAC,OAAO,EAAE;QAC/C,GAAG,EAAE,IAAA,2BAAe,EAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC;KACzC,CAAC,CACH,CAAC;AACJ,CAAC,CAAC;AAfW,QAAA,YAAY,gBAevB;AAEF,2IAA2I;AAC3I,SAAS,YAAY,CAAC,SAAiB;IACrC,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,SAAS,CAAC,CAAC;IAE/B,uDAAuD;IACvD,0CAA0C;IAC1C,IAAI,GAAG,CAAC,QAAQ,KAAK,YAAY,IAAI,GAAG,CAAC,QAAQ,KAAK,gBAAgB,EAAE;QACtE,OAAO,wBAAwB,CAAC;KACjC;IAED,6BAA6B;IAC7B,GAAG,CAAC,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;IACpD,OAAO,GAAG,CAAC,QAAQ,EAAE,CAAC;AACxB,CAAC;AAED,SAAgB,aAAa;IAC3B,OAAO;QACL,IAAI,EAAE,IAAA,+BAAgB,EAAC,OAAO,CAAC;QAC/B,GAAG,EAAE,IAAA,0BAAmB,EAAC,mBAAmB,CAAC;QAC7C,MAAM,EAAE,IAAA,0BAAmB,EAAC,gBAAgB,CAAC;KAC9C,CAAC;AACJ,CAAC;AAND,sCAMC;AAED,uFAAuF;AACvF,qFAAqF;AACrF,+CAA+C;AAC/C,SAAgB,mBAAmB;IACjC,OAAO,IAAA,oBAAY,EAAC,aAAa,EAAE,CAAC,CAAC;AACvC,CAAC;AAFD,kDAEC;AAED,IAAI,mBAAmB,GAA8B,SAAS,CAAC;AAE/D;;;;;;;GAOG;AACI,KAAK,UAAU,2BAA2B;IAC/C,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,uDAAuD,CAAC,CAAC;KAC1E;IACD,IAAI,mBAAmB,KAAK,SAAS,EAAE;QACrC,mBAAmB,GAAG,MAAM,IAAI,CAAC,gBAAgB,CAAC,aAAa,EAAE,CAAC,CAAC;KACpE;IACD,OAAO,mBAAmB,CAAC;AAC7B,CAAC;AARD,kEAQC"}

lib/api-client.test.js

@@ -81,6 +81,17 @@ ava_1.default.beforeEach(() => {
         userAgent: `CodeQL-Action/${pkg.version}`,
     });
 });
+(0, ava_1.default)("Get the API with an API URL directly", async (t) => {
+    doTest(t, {
+        auth: "xyz",
+        url: "http://github.localhost",
+        apiURL: "http://api.github.localhost",
+    }, undefined, {
+        auth: "token xyz",
+        baseUrl: "http://api.github.localhost",
+        userAgent: `CodeQL-Action/${pkg.version}`,
+    });
+});
 function doTest(t, clientArgs, clientOptions, expected) {
     (0, api_client_1.getApiClient)(clientArgs, clientOptions);
     const firstCallArgs = githubStub.args[0];

lib/api-client.test.js.map

@@ -1 +1 @@
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+{"version":3,"file":"api-client.test.js","sourceRoot":"","sources":["../src/api-client.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AAAA,uEAAyD;AACzD,8CAA6C;AAC7C,6CAA+B;AAE/B,6CAA4C;AAC5C,mDAA6C;AAC7C,iCAAqD;AAErD,8CAA8C;AAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC;AAEvC,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,IAAI,UAA2B,CAAC;AAChC,IAAI,UAA2B,CAAC;AAEhC,aAAI,CAAC,UAAU,CAAC,GAAG,EAAE;IACnB,UAAU,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;IACtD,UAAU,GAAG,KAAK,CAAC,IAAI,EAAE,CAAC;IAC1B,UAAU,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IAC/B,IAAA,4BAAqB,EAAC,WAAI,CAAC,OAAO,EAAE,GAAG,CAAC,OAAO,CAAC,CAAC;AACnD,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,oBAAoB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACrC,MAAM,CACJ,CAAC,EACD;QACE,IAAI,EAAE,KAAK;QACX,gBAAgB,EAAE,KAAK;QACvB,GAAG,EAAE,gBAAgB;KACtB,EACD,SAAS,EACT;QACE,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,uBAAuB;QAChC,SAAS,EAAE,iBAAiB,GAAG,CAAC,OAAO,EAAE;KAC1C,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,6BAA6B,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC9C,MAAM,CACJ,CAAC,EACD;QACE,IAAI,EAAE,KAAK;QACX,gBAAgB,EAAE,KAAK;QACvB,GAAG,EAAE,gBAAgB;KACtB,EACD,EAAE,aAAa,EAAE,IAAI,EAAE,EACvB;QACE,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,uBAAuB;QAChC,SAAS,EAAE,iBAAiB,GAAG,CAAC,OAAO,EAAE;KAC1C,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,yCAAyC,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC1D,MAAM,CACJ,CAAC,EACD;QACE,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,gBAAgB;KACtB,EACD,EAAE,aAAa,EAAE,IAAI,EAAE,EACvB;QACE,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,uBAAuB;QAChC,SAAS,EAAE,iBAAiB,GAAG,CAAC,OAAO,EAAE;KAC1C,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,oCAAoC,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACrD,MAAM,CACJ,CAAC,EACD;QACE,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,qCAAqC;KAC3C,EACD,SAAS,EACT;QACE,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,wBAAwB;QACjC,SAAS,EAAE,iBAAiB,GAAG,CAAC,OAAO,EAAE;KAC1C,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,sCAAsC,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvD,MAAM,CACJ,CAAC,EACD;QACE,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,yBAAyB;QAC9B,MAAM,EAAE,6BAA6B;KACtC,EACD,SAAS,EACT;QACE,IAAI,EAAE,WAAW;QACjB,OAAO,EAAE,6BAA6B;QACtC,SAAS,EAAE,iBAAiB,GAAG,CAAC,OAAO,EAAE;KAC1C,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,SAAS,MAAM,CACb,CAA4B,EAC5B,UAAe,EACf,aAAkB,EAClB,QAAa;IAEb,IAAA,yBAAY,EAAC,UAAU,EAAE,aAAa,CAAC,CAAC;IAExC,MAAM,aAAa,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACzC,iEAAiE;IACjE,OAAO,aAAa,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;IAC5B,CAAC,CAAC,SAAS,CAAC,aAAa,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC;AACzC,CAAC"}

lib/api-compatibility.json

@@ -1 +1 @@
-{ "maximumVersion": "3.5", "minimumVersion": "3.1" }
+{ "maximumVersion": "3.7", "minimumVersion": "3.2" }

lib/autobuild-action.js

@@ -21,9 +21,13 @@ var __importStar = (this && this.__importStar) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const core = __importStar(require("@actions/core"));
 const actions_util_1 = require("./actions-util");
+const api_client_1 = require("./api-client");
 const autobuild_1 = require("./autobuild");
-const config_utils = __importStar(require("./config-utils"));
+const configUtils = __importStar(require("./config-utils"));
+const feature_flags_1 = require("./feature-flags");
+const languages_1 = require("./languages");
 const logging_1 = require("./logging");
+const repository_1 = require("./repository");
 const util_1 = require("./util");
 // eslint-disable-next-line import/no-commonjs
 const pkg = require("../package.json");
@@ -39,29 +43,45 @@ async function sendCompletedStatusReport(startedAt, allLanguages, failingLanguag
     await (0, actions_util_1.sendStatusReport)(statusReport);
 }
 async function run() {
-    const logger = (0, logging_1.getActionsLogger)();
     const startedAt = new Date();
-    let language = undefined;
+    const logger = (0, logging_1.getActionsLogger)();
+    await (0, util_1.checkActionVersion)(pkg.version);
+    let currentLanguage = undefined;
+    let languages = undefined;
     try {
         if (!(await (0, actions_util_1.sendStatusReport)(await (0, actions_util_1.createStatusReportBase)("autobuild", "starting", startedAt)))) {
             return;
         }
-        const config = await config_utils.getConfig((0, actions_util_1.getTemporaryDirectory)(), logger);
+        const gitHubVersion = await (0, api_client_1.getGitHubVersionActionsOnly)();
+        (0, util_1.checkGitHubVersionInRange)(gitHubVersion, logger, util_1.Mode.actions);
+        const featureFlags = new feature_flags_1.GitHubFeatureFlags(gitHubVersion, (0, api_client_1.getApiDetails)(), (0, repository_1.parseRepositoryNwo)((0, util_1.getRequiredEnvParam)("GITHUB_REPOSITORY")), logger);
+        const config = await configUtils.getConfig((0, actions_util_1.getTemporaryDirectory)(), logger);
         if (config === undefined) {
             throw new Error("Config file could not be found at expected location. Has the 'init' action been called?");
         }
-        language = (0, autobuild_1.determineAutobuildLanguage)(config, logger);
-        if (language !== undefined) {
-            await (0, autobuild_1.runAutobuild)(language, config, logger);
+        languages = await (0, autobuild_1.determineAutobuildLanguages)(config, featureFlags, logger);
+        if (languages !== undefined) {
+            const workingDirectory = (0, actions_util_1.getOptionalInput)("working-directory");
+            if (workingDirectory) {
+                logger.info(`Changing autobuilder working directory to ${workingDirectory}`);
+                process.chdir(workingDirectory);
+            }
+            for (const language of languages) {
+                currentLanguage = language;
+                await (0, autobuild_1.runAutobuild)(language, config, logger);
+                if (language === languages_1.Language.go) {
+                    core.exportVariable(util_1.DID_AUTOBUILD_GO_ENV_VAR_NAME, "true");
+                }
+            }
         }
     }
     catch (error) {
         core.setFailed(`We were unable to automatically build your code. Please replace the call to the autobuild action with your custom build steps.  ${error instanceof Error ? error.message : String(error)}`);
         console.log(error);
-        await sendCompletedStatusReport(startedAt, language ? [language] : [], language, error instanceof Error ? error : new Error(String(error)));
+        await sendCompletedStatusReport(startedAt, languages !== null && languages !== void 0 ? languages : [], currentLanguage, error instanceof Error ? error : new Error(String(error)));
         return;
     }
-    await sendCompletedStatusReport(startedAt, language ? [language] : []);
+    await sendCompletedStatusReport(startedAt, languages !== null && languages !== void 0 ? languages : []);
 }
 async function runWrapper() {
     try {

lib/autobuild-action.js.map

@@ -1 +1 @@
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+{"version":3,"file":"autobuild-action.js","sourceRoot":"","sources":["../src/autobuild-action.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;AAAA,oDAAsC;AAEtC,iDAOwB;AACxB,6CAA0E;AAC1E,2CAAwE;AACxE,4DAA8C;AAC9C,mDAAqD;AACrD,2CAAuC;AACvC,uCAA6C;AAC7C,6CAAkD;AAClD,iCAOgB;AAEhB,8CAA8C;AAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAAC;AASvC,KAAK,UAAU,yBAAyB,CACtC,SAAe,EACf,YAAsB,EACtB,eAAwB,EACxB,KAAa;IAEb,IAAA,4BAAqB,EAAC,WAAI,CAAC,OAAO,EAAE,GAAG,CAAC,OAAO,CAAC,CAAC;IAEjD,MAAM,MAAM,GAAG,IAAA,+BAAgB,EAAC,KAAK,EAAE,eAAe,CAAC,CAAC;IACxD,MAAM,gBAAgB,GAAG,MAAM,IAAA,qCAAsB,EACnD,WAAW,EACX,MAAM,EACN,SAAS,EACT,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,OAAO,EACd,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,KAAK,CACb,CAAC;IACF,MAAM,YAAY,GAA0B;QAC1C,GAAG,gBAAgB;QACnB,mBAAmB,EAAE,YAAY,CAAC,IAAI,CAAC,GAAG,CAAC;QAC3C,iBAAiB,EAAE,eAAe;KACnC,CAAC;IACF,MAAM,IAAA,+BAAgB,EAAC,YAAY,CAAC,CAAC;AACvC,CAAC;AAED,KAAK,UAAU,GAAG;IAChB,MAAM,SAAS,GAAG,IAAI,IAAI,EAAE,CAAC;IAC7B,MAAM,MAAM,GAAG,IAAA,0BAAgB,GAAE,CAAC;IAClC,MAAM,IAAA,yBAAkB,EAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IACtC,IAAI,eAAe,GAAyB,SAAS,CAAC;IACtD,IAAI,SAAS,GAA2B,SAAS,CAAC;IAClD,IAAI;QACF,IACE,CAAC,CAAC,MAAM,IAAA,+BAAgB,EACtB,MAAM,IAAA,qCAAsB,EAAC,WAAW,EAAE,UAAU,EAAE,SAAS,CAAC,CACjE,CAAC,EACF;YACA,OAAO;SACR;QAED,MAAM,aAAa,GAAG,MAAM,IAAA,wCAA2B,GAAE,CAAC;QAC1D,IAAA,gCAAyB,EAAC,aAAa,EAAE,MAAM,EAAE,WAAI,CAAC,OAAO,CAAC,CAAC;QAE/D,MAAM,YAAY,GAAG,IAAI,kCAAkB,CACzC,aAAa,EACb,IAAA,0BAAa,GAAE,EACf,IAAA,+BAAkB,EAAC,IAAA,0BAAmB,EAAC,mBAAmB,CAAC,CAAC,EAC5D,MAAM,CACP,CAAC;QAEF,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,SAAS,CAAC,IAAA,oCAAqB,GAAE,EAAE,MAAM,CAAC,CAAC;QAC5E,IAAI,MAAM,KAAK,SAAS,EAAE;YACxB,MAAM,IAAI,KAAK,CACb,yFAAyF,CAC1F,CAAC;SACH;QAED,SAAS,GAAG,MAAM,IAAA,uCAA2B,EAAC,MAAM,EAAE,YAAY,EAAE,MAAM,CAAC,CAAC;QAC5E,IAAI,SAAS,KAAK,SAAS,EAAE;YAC3B,MAAM,gBAAgB,GAAG,IAAA,+BAAgB,EAAC,mBAAmB,CAAC,CAAC;YAC/D,IAAI,gBAAgB,EAAE;gBACpB,MAAM,CAAC,IAAI,CACT,6CAA6C,gBAAgB,EAAE,CAChE,CAAC;gBACF,OAAO,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC;aACjC;YACD,KAAK,MAAM,QAAQ,IAAI,SAAS,EAAE;gBAChC,eAAe,GAAG,QAAQ,CAAC;gBAC3B,MAAM,IAAA,wBAAY,EAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;gBAC7C,IAAI,QAAQ,KAAK,oBAAQ,CAAC,EAAE,EAAE;oBAC5B,IAAI,CAAC,cAAc,CAAC,oCAA6B,EAAE,MAAM,CAAC,CAAC;iBAC5D;aACF;SACF;KACF;IAAC,OAAO,KAAK,EAAE;QACd,IAAI,CAAC,SAAS,CACZ,mIACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;QACF,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QACnB,MAAM,yBAAyB,CAC7B,SAAS,EACT,SAAS,aAAT,SAAS,cAAT,SAAS,GAAI,EAAE,EACf,eAAe,EACf,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAC1D,CAAC;QACF,OAAO;KACR;IAED,MAAM,yBAAyB,CAAC,SAAS,EAAE,SAAS,aAAT,SAAS,cAAT,SAAS,GAAI,EAAE,CAAC,CAAC;AAC9D,CAAC;AAED,KAAK,UAAU,UAAU;IACvB,IAAI;QACF,MAAM,GAAG,EAAE,CAAC;KACb;IAAC,OAAO,KAAK,EAAE;QACd,IAAI,CAAC,SAAS,CAAC,4BAA4B,KAAK,EAAE,CAAC,CAAC;QACpD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;KACpB;AACH,CAAC;AAED,KAAK,UAAU,EAAE,CAAC"}

lib/autobuild.js

@@ -1,28 +1,96 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.runAutobuild = exports.determineAutobuildLanguage = void 0;
+exports.runAutobuild = exports.determineAutobuildLanguages = void 0;
 const codeql_1 = require("./codeql");
 const languages_1 = require("./languages");
-function determineAutobuildLanguage(config, logger) {
+const util = __importStar(require("./util"));
+async function determineAutobuildLanguages(config, featureFlags, logger) {
+    const isGoExtractionReconciliationEnabled = await util.isGoExtractionReconciliationEnabled(featureFlags);
     // Attempt to find a language to autobuild
     // We want pick the dominant language in the repo from the ones we're able to build
     // The languages are sorted in order specified by user or by lines of code if we got
     // them from the GitHub API, so try to build the first language on the list.
-    const autobuildLanguages = config.languages.filter(languages_1.isTracedLanguage);
-    const language = autobuildLanguages[0];
-    if (!language) {
+    const autobuildLanguages = config.languages.filter((l) => (0, languages_1.isTracedLanguage)(l, isGoExtractionReconciliationEnabled, logger));
+    if (!autobuildLanguages) {
         logger.info("None of the languages in this project require extra build steps");
         return undefined;
     }
-    logger.debug(`Detected dominant traced language: ${language}`);
-    if (autobuildLanguages.length > 1) {
-        logger.warning(`We will only automatically build ${language} code. If you wish to scan ${autobuildLanguages
-            .slice(1)
-            .join(" and ")}, you must replace this call with custom build steps.`);
+    /**
+     * Additionally autobuild Go in the autobuild Action to ensure backwards
+     * compatibility for users performing a multi-language build within a single
+     * job.
+     *
+     * For example, consider a user with the following workflow file:
+     *
+     * ```yml
+     * - uses: github/codeql-action/init@v2
+     *   with:
+     *     languages: go, java
+     * - uses: github/codeql-action/autobuild@v2
+     * - uses: github/codeql-action/analyze@v2
+     * ```
+     *
+     * - With Go extraction disabled, we will run the Java autobuilder in the
+     *   autobuild Action, ensuring we extract both Java and Go code.
+     * - With Go extraction enabled, taking the previous behavior we'd run the Go
+     *   autobuilder, since Go is first on the list of languages. We wouldn't run
+     *   the Java autobuilder at all and so we'd only extract Go code.
+     *
+     * We therefore introduce a special case here such that we'll autobuild Go
+     * in addition to the primary non-Go traced language in the autobuild Action.
+     *
+     * This special case behavior should be removed as part of the next major
+     * version of the CodeQL Action.
+     */
+    const autobuildLanguagesWithoutGo = autobuildLanguages.filter((l) => l !== languages_1.Language.go);
+    const languages = [];
+    // First run the autobuilder for the first non-Go traced language, if one
+    // exists.
+    if (autobuildLanguagesWithoutGo[0] !== undefined) {
+        languages.push(autobuildLanguagesWithoutGo[0]);
     }
-    return language;
+    // If Go is requested, run the Go autobuilder last to ensure it doesn't
+    // interfere with the other autobuilder.
+    if (autobuildLanguages.length !== autobuildLanguagesWithoutGo.length) {
+        languages.push(languages_1.Language.go);
+    }
+    logger.debug(`Will autobuild ${languages.join(" and ")}.`);
+    // In general the autobuilders for other traced languages may conflict with
+    // each other. Therefore if a user has requested more than one non-Go traced
+    // language, we ask for manual build steps.
+    // Matrixing the build would also work, but that would change the SARIF
+    // categories, potentially leading to a "stale tips" situation where alerts
+    // that should be fixed remain on a repo since they are linked to SARIF
+    // categories that are no longer updated.
+    if (autobuildLanguagesWithoutGo.length > 1) {
+        logger.warning(`We will only automatically build ${languages.join(" and ")} code. If you wish to scan ${autobuildLanguagesWithoutGo
+            .slice(1)
+            .join(" and ")}, you must replace the autobuild step of your workflow with custom build steps. ` +
+            "For more information, see " +
+            "https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-the-codeql-workflow-for-compiled-languages#adding-build-steps-for-a-compiled-language");
+    }
+    return languages;
 }
-exports.determineAutobuildLanguage = determineAutobuildLanguage;
+exports.determineAutobuildLanguages = determineAutobuildLanguages;
 async function runAutobuild(language, config, logger) {
     logger.startGroup(`Attempting to automatically build ${language} code`);
     const codeQL = await (0, codeql_1.getCodeQL)(config.codeQLCmd);

lib/autobuild.js.map

@@ -1 +1 @@
-{"version":3,"file":"autobuild.js","sourceRoot":"","sources":["../src/autobuild.ts"],"names":[],"mappings":";;;AAAA,qCAAqC;AAErC,2CAAyD;AAGzD,SAAgB,0BAA0B,CACxC,MAA2B,EAC3B,MAAc;IAEd,0CAA0C;IAC1C,mFAAmF;IACnF,oFAAoF;IACpF,4EAA4E;IAC5E,MAAM,kBAAkB,GAAG,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,4BAAgB,CAAC,CAAC;IACrE,MAAM,QAAQ,GAAG,kBAAkB,CAAC,CAAC,CAAC,CAAC;IAEvC,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,CAAC,IAAI,CACT,iEAAiE,CAClE,CAAC;QACF,OAAO,SAAS,CAAC;KAClB;IAED,MAAM,CAAC,KAAK,CAAC,sCAAsC,QAAQ,EAAE,CAAC,CAAC;IAE/D,IAAI,kBAAkB,CAAC,MAAM,GAAG,CAAC,EAAE;QACjC,MAAM,CAAC,OAAO,CACZ,oCAAoC,QAAQ,8BAA8B,kBAAkB;aACzF,KAAK,CAAC,CAAC,CAAC;aACR,IAAI,CAAC,OAAO,CAAC,uDAAuD,CACxE,CAAC;KACH;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC;AA7BD,gEA6BC;AAEM,KAAK,UAAU,YAAY,CAChC,QAAkB,EAClB,MAA2B,EAC3B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,qCAAqC,QAAQ,OAAO,CAAC,CAAC;IACxE,MAAM,MAAM,GAAG,MAAM,IAAA,kBAAS,EAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IACjD,MAAM,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AATD,oCASC"}
+{"version":3,"file":"autobuild.js","sourceRoot":"","sources":["../src/autobuild.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAAA,qCAAqC;AAGrC,2CAAyD;AAEzD,6CAA+B;AAExB,KAAK,UAAU,2BAA2B,CAC/C,MAA0B,EAC1B,YAA0B,EAC1B,MAAc;IAEd,MAAM,mCAAmC,GACvC,MAAM,IAAI,CAAC,mCAAmC,CAAC,YAAY,CAAC,CAAC;IAC/D,0CAA0C;IAC1C,mFAAmF;IACnF,oFAAoF;IACpF,4EAA4E;IAC5E,MAAM,kBAAkB,GAAG,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CACvD,IAAA,4BAAgB,EAAC,CAAC,EAAE,mCAAmC,EAAE,MAAM,CAAC,CACjE,CAAC;IAEF,IAAI,CAAC,kBAAkB,EAAE;QACvB,MAAM,CAAC,IAAI,CACT,iEAAiE,CAClE,CAAC;QACF,OAAO,SAAS,CAAC;KAClB;IAED;;;;;;;;;;;;;;;;;;;;;;;;;;OA0BG;IACH,MAAM,2BAA2B,GAAG,kBAAkB,CAAC,MAAM,CAC3D,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,oBAAQ,CAAC,EAAE,CACzB,CAAC;IAEF,MAAM,SAAS,GAAe,EAAE,CAAC;IACjC,yEAAyE;IACzE,UAAU;IACV,IAAI,2BAA2B,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE;QAChD,SAAS,CAAC,IAAI,CAAC,2BAA2B,CAAC,CAAC,CAAC,CAAC,CAAC;KAChD;IACD,uEAAuE;IACvE,wCAAwC;IACxC,IAAI,kBAAkB,CAAC,MAAM,KAAK,2BAA2B,CAAC,MAAM,EAAE;QACpE,SAAS,CAAC,IAAI,CAAC,oBAAQ,CAAC,EAAE,CAAC,CAAC;KAC7B;IAED,MAAM,CAAC,KAAK,CAAC,kBAAkB,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAE3D,2EAA2E;IAC3E,4EAA4E;IAC5E,2CAA2C;IAC3C,uEAAuE;IACvE,2EAA2E;IAC3E,uEAAuE;IACvE,yCAAyC;IACzC,IAAI,2BAA2B,CAAC,MAAM,GAAG,CAAC,EAAE;QAC1C,MAAM,CAAC,OAAO,CACZ,oCAAoC,SAAS,CAAC,IAAI,CAChD,OAAO,CACR,8BAA8B,2BAA2B;aACvD,KAAK,CAAC,CAAC,CAAC;aACR,IAAI,CACH,OAAO,CACR,kFAAkF;YACnF,4BAA4B;YAC5B,0NAA0N,CAC7N,CAAC;KACH;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAzFD,kEAyFC;AAEM,KAAK,UAAU,YAAY,CAChC,QAAkB,EAClB,MAA0B,EAC1B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,qCAAqC,QAAQ,OAAO,CAAC,CAAC;IACxE,MAAM,MAAM,GAAG,MAAM,IAAA,kBAAS,EAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IACjD,MAAM,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AATD,oCASC"}

lib/codeql.js

@@ -22,21 +22,24 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getExtraOptions = exports.getCodeQLForTesting = exports.getCachedCodeQL = exports.setCodeQL = exports.getCodeQL = exports.convertToSemVer = exports.getCodeQLURLVersion = exports.setupCodeQL = exports.getCodeQLActionRepository = exports.CODEQL_VERSION_NEW_TRACING = exports.CODEQL_VERSION_ML_POWERED_QUERIES = exports.CODEQL_VERSION_COUNTS_LINES = exports.CommandInvocationError = void 0;
+exports.getExtraOptions = exports.getCodeQLForTesting = exports.getCachedCodeQL = exports.setCodeQL = exports.getCodeQL = exports.convertToSemVer = exports.getCodeQLURLVersion = exports.setupCodeQL = exports.getCodeQLActionRepository = exports.CODEQL_VERSION_BETTER_RESOLVE_LANGUAGES = exports.CODEQL_VERSION_ML_POWERED_QUERIES_WINDOWS = exports.CODEQL_VERSION_NEW_TRACING = exports.CODEQL_VERSION_GHES_PACK_DOWNLOAD = exports.CODEQL_VERSION_CONFIG_FILES = exports.CODEQL_VERSION_ML_POWERED_QUERIES = exports.CODEQL_VERSION_COUNTS_LINES = exports.CODEQL_DEFAULT_ACTION_REPOSITORY = exports.CommandInvocationError = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const toolcache = __importStar(require("@actions/tool-cache"));
 const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
 const yaml = __importStar(require("js-yaml"));
 const query_string_1 = __importDefault(require("query-string"));
 const semver = __importStar(require("semver"));
+const uuid_1 = require("uuid");
 const actions_util_1 = require("./actions-util");
 const api = __importStar(require("./api-client"));
 const defaults = __importStar(require("./defaults.json")); // Referenced from codeql-action-sync-tool!
 const error_matcher_1 = require("./error-matcher");
+const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
-const toolcache = __importStar(require("./toolcache"));
 const toolrunner_error_catcher_1 = require("./toolrunner-error-catcher");
+const trap_caching_1 = require("./trap-caching");
 const util = __importStar(require("./util"));
 const util_1 = require("./util");
 class CommandInvocationError extends Error {
@@ -53,7 +56,7 @@ exports.CommandInvocationError = CommandInvocationError;
  */
 let cachedCodeQL = undefined;
 const CODEQL_BUNDLE_VERSION = defaults.bundleVersion;
-const CODEQL_DEFAULT_ACTION_REPOSITORY = "github/codeql-action";
+exports.CODEQL_DEFAULT_ACTION_REPOSITORY = "github/codeql-action";
 /**
  * The oldest version of CodeQL that the Action will run with. This should be
  * at least three minor versions behind the current version. The version flags
@@ -76,8 +79,11 @@ const CODEQL_VERSION_GROUP_RULES = "2.5.5";
 const CODEQL_VERSION_SARIF_GROUP = "2.5.3";
 exports.CODEQL_VERSION_COUNTS_LINES = "2.6.2";
 const CODEQL_VERSION_CUSTOM_QUERY_HELP = "2.7.1";
-const CODEQL_VERSION_CONFIG_FILES = "2.8.2"; // Versions before 2.8.2 weren't tolerant to unknown properties
 exports.CODEQL_VERSION_ML_POWERED_QUERIES = "2.7.5";
+const CODEQL_VERSION_LUA_TRACER_CONFIG = "2.10.0";
+exports.CODEQL_VERSION_CONFIG_FILES = "2.10.1";
+const CODEQL_VERSION_LUA_TRACING_GO_WINDOWS_FIXED = "2.10.4";
+exports.CODEQL_VERSION_GHES_PACK_DOWNLOAD = "2.10.4";
 /**
  * This variable controls using the new style of tracing from the CodeQL
  * CLI. In particular, with versions above this we will use both indirect
@@ -88,6 +94,17 @@ exports.CODEQL_VERSION_ML_POWERED_QUERIES = "2.7.5";
  * versions above that.
  */
 exports.CODEQL_VERSION_NEW_TRACING = "2.7.0";
+/**
+ * Versions 2.9.0+ of the CodeQL CLI run machine learning models from a temporary directory, which
+ * resolves an issue on Windows where TensorFlow models are not correctly loaded due to the path of
+ * some of their files being greater than MAX_PATH (260 characters).
+ */
+exports.CODEQL_VERSION_ML_POWERED_QUERIES_WINDOWS = "2.9.0";
+/**
+ * Previous versions had the option already, but were missing the
+ * --extractor-options-verbosity that we need.
+ */
+exports.CODEQL_VERSION_BETTER_RESOLVE_LANGUAGES = "2.10.3";
 function getCodeQLBundleName() {
     let platform;
     if (process.platform === "win32") {
@@ -106,7 +123,7 @@ function getCodeQLBundleName() {
 }
 function getCodeQLActionRepository(logger) {
     if (!util.isActions()) {
-        return CODEQL_DEFAULT_ACTION_REPOSITORY;
+        return exports.CODEQL_DEFAULT_ACTION_REPOSITORY;
     }
     else {
         return getActionsCodeQLActionRepository(logger);
@@ -123,7 +140,7 @@ function getActionsCodeQLActionRepository(logger) {
         // This handles the case where the Action does not come from an Action repository,
         // e.g. our integration tests which use the Action code from the current checkout.
         logger.info("The CodeQL Action is checked out locally. Using the default CodeQL Action repository.");
-        return CODEQL_DEFAULT_ACTION_REPOSITORY;
+        return exports.CODEQL_DEFAULT_ACTION_REPOSITORY;
     }
     logger.info("GITHUB_ACTION_REPOSITORY environment variable was not set. Falling back to legacy method of finding the GitHub Action.");
     const relativeScriptPathParts = (0, actions_util_1.getRelativeScriptPath)().split(path.sep);
@@ -135,9 +152,9 @@ async function getCodeQLBundleDownloadURL(apiDetails, variant, logger) {
         // This GitHub instance, and this Action.
         [apiDetails.url, codeQLActionRepository],
         // This GitHub instance, and the canonical Action.
-        [apiDetails.url, CODEQL_DEFAULT_ACTION_REPOSITORY],
+        [apiDetails.url, exports.CODEQL_DEFAULT_ACTION_REPOSITORY],
         // GitHub.com, and the canonical Action.
-        [util.GITHUB_DOTCOM_URL, CODEQL_DEFAULT_ACTION_REPOSITORY],
+        [util.GITHUB_DOTCOM_URL, exports.CODEQL_DEFAULT_ACTION_REPOSITORY],
     ];
     // We now filter out any duplicates.
     // Duplicates will happen either because the GitHub instance is GitHub.com, or because the Action is not a fork.
@@ -173,7 +190,7 @@ async function getCodeQLBundleDownloadURL(apiDetails, variant, logger) {
         const [apiURL, repository] = downloadSource;
         // If we've reached the final case, short-circuit the API check since we know the bundle exists and is public.
         if (apiURL === util.GITHUB_DOTCOM_URL &&
-            repository === CODEQL_DEFAULT_ACTION_REPOSITORY) {
+            repository === exports.CODEQL_DEFAULT_ACTION_REPOSITORY) {
             break;
         }
         const [repositoryOwner, repositoryName] = repository.split("/");
@@ -194,7 +211,7 @@ async function getCodeQLBundleDownloadURL(apiDetails, variant, logger) {
             logger.info(`Looked for CodeQL bundle in ${downloadSource[1]} on ${downloadSource[0]} but got error ${e}.`);
         }
     }
-    return `https://github.com/${CODEQL_DEFAULT_ACTION_REPOSITORY}/releases/download/${CODEQL_BUNDLE_VERSION}/${codeQLBundleName}`;
+    return `https://github.com/${exports.CODEQL_DEFAULT_ACTION_REPOSITORY}/releases/download/${CODEQL_BUNDLE_VERSION}/${codeQLBundleName}`;
 }
 /**
  * Set up CodeQL CLI access.
@@ -202,42 +219,55 @@ async function getCodeQLBundleDownloadURL(apiDetails, variant, logger) {
  * @param codeqlURL
  * @param apiDetails
  * @param tempDir
- * @param toolCacheDir
  * @param variant
+ * @param featureFlags
  * @param logger
  * @param checkVersion Whether to check that CodeQL CLI meets the minimum
  *        version requirement. Must be set to true outside tests.
- * @returns
+ * @returns a { CodeQL, toolsVersion } object.
  */
-async function setupCodeQL(codeqlURL, apiDetails, tempDir, toolCacheDir, variant, logger, checkVersion) {
+async function setupCodeQL(codeqlURL, apiDetails, tempDir, variant, featureFlags, logger, checkVersion) {
     try {
+        const forceLatestReason = 
         // We use the special value of 'latest' to prioritize the version in the
         // defaults over any pinned cached version.
-        const forceLatest = codeqlURL === "latest";
+        codeqlURL === "latest"
+            ? '"tools: latest" was requested'
+            : // If the user hasn't requested a particular CodeQL version, then bypass
+                // the toolcache when the appropriate feature flag is enabled. This
+                // allows us to quickly rollback a broken bundle that has made its way
+                // into the toolcache.
+                codeqlURL === undefined &&
+                    (await featureFlags.getValue(feature_flags_1.FeatureFlag.BypassToolcacheEnabled))
+                    ? "a specific version of CodeQL was not requested and the bypass toolcache feature flag is enabled"
+                    : undefined;
+        const forceLatest = forceLatestReason !== undefined;
         if (forceLatest) {
+            logger.debug(`Forcing the latest version of the CodeQL tools since ${forceLatestReason}.`);
             codeqlURL = undefined;
         }
         let codeqlFolder;
         let codeqlURLVersion;
         if (codeqlURL && !codeqlURL.startsWith("http")) {
-            codeqlFolder = await toolcache.extractTar(codeqlURL, tempDir, logger);
+            codeqlFolder = await toolcache.extractTar(codeqlURL);
             codeqlURLVersion = "local";
         }
         else {
             codeqlURLVersion = getCodeQLURLVersion(codeqlURL || `/${CODEQL_BUNDLE_VERSION}/`);
             const codeqlURLSemVer = convertToSemVer(codeqlURLVersion, logger);
             // If we find the specified version, we always use that.
-            codeqlFolder = toolcache.find("CodeQL", codeqlURLSemVer, toolCacheDir, logger);
+            codeqlFolder = toolcache.find("CodeQL", codeqlURLSemVer);
             // If we don't find the requested version, in some cases we may allow a
             // different version to save download time if the version hasn't been
             // specified explicitly (in which case we always honor it).
             if (!codeqlFolder && !codeqlURL && !forceLatest) {
-                const codeqlVersions = toolcache.findAllVersions("CodeQL", toolCacheDir, logger);
+                const codeqlVersions = toolcache.findAllVersions("CodeQL");
                 if (codeqlVersions.length === 1 && (0, util_1.isGoodVersion)(codeqlVersions[0])) {
-                    const tmpCodeqlFolder = toolcache.find("CodeQL", codeqlVersions[0], toolCacheDir, logger);
+                    const tmpCodeqlFolder = toolcache.find("CodeQL", codeqlVersions[0]);
                     if (fs.existsSync(path.join(tmpCodeqlFolder, "pinned-version"))) {
                         logger.debug(`CodeQL in cache overriding the default ${CODEQL_BUNDLE_VERSION}`);
                         codeqlFolder = tmpCodeqlFolder;
+                        codeqlURLVersion = codeqlVersions[0];
                     }
                 }
             }
@@ -250,7 +280,9 @@ async function setupCodeQL(codeqlURL, apiDetails, tempDir, toolCacheDir, variant
                 }
                 const parsedCodeQLURL = new URL(codeqlURL);
                 const parsedQueryString = query_string_1.default.parse(parsedCodeQLURL.search);
-                const headers = { accept: "application/octet-stream" };
+                const headers = {
+                    accept: "application/octet-stream",
+                };
                 // We only want to provide an authorization header if we are downloading
                 // from the same GitHub instance the Action is running on.
                 // This avoids leaking Enterprise tokens to dotcom.
@@ -264,10 +296,12 @@ async function setupCodeQL(codeqlURL, apiDetails, tempDir, toolCacheDir, variant
                     logger.debug("Downloading CodeQL bundle without token.");
                 }
                 logger.info(`Downloading CodeQL tools from ${codeqlURL}. This may take a while.`);
-                const codeqlPath = await toolcache.downloadTool(codeqlURL, tempDir, headers);
+                const dest = path.join(tempDir, (0, uuid_1.v4)());
+                const finalHeaders = Object.assign({ "User-Agent": "CodeQL Action" }, headers);
+                const codeqlPath = await toolcache.downloadTool(codeqlURL, dest, undefined, finalHeaders);
                 logger.debug(`CodeQL bundle download to ${codeqlPath} complete.`);
-                const codeqlExtracted = await toolcache.extractTar(codeqlPath, tempDir, logger);
-                codeqlFolder = await toolcache.cacheDir(codeqlExtracted, "CodeQL", codeqlURLSemVer, toolCacheDir, logger);
+                const codeqlExtracted = await toolcache.extractTar(codeqlPath);
+                codeqlFolder = await toolcache.cacheDir(codeqlExtracted, "CodeQL", codeqlURLSemVer);
             }
         }
         let codeqlCmd = path.join(codeqlFolder, "codeql", "codeql");
@@ -346,6 +380,7 @@ function setCodeQL(partialCodeql) {
         extractScannedLanguage: resolveFunction(partialCodeql, "extractScannedLanguage"),
         finalizeDatabase: resolveFunction(partialCodeql, "finalizeDatabase"),
         resolveLanguages: resolveFunction(partialCodeql, "resolveLanguages"),
+        betterResolveLanguages: resolveFunction(partialCodeql, "betterResolveLanguages"),
         resolveQueries: resolveFunction(partialCodeql, "resolveQueries"),
         packDownload: resolveFunction(partialCodeql, "packDownload"),
         databaseCleanup: resolveFunction(partialCodeql, "databaseCleanup"),
@@ -376,8 +411,8 @@ exports.getCachedCodeQL = getCachedCodeQL;
  * a non-existent placeholder codeql command, so tests that use this function
  * should also stub the toolrunner.ToolRunner constructor.
  */
-async function getCodeQLForTesting() {
-    return getCodeQLForCmd("codeql-for-testing", false);
+async function getCodeQLForTesting(cmd = "codeql-for-testing") {
+    return getCodeQLForCmd(cmd, false);
 }
 exports.getCodeQLForTesting = getCodeQLForTesting;
 /**
@@ -396,7 +431,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
         async getVersion() {
             let result = util.getCachedCodeQlVersion();
             if (result === undefined) {
-                result = await runTool(cmd, ["version", "--format=terse"]);
+                result = (await runTool(cmd, ["version", "--format=terse"])).trim();
                 util.cacheCodeQlVersion(result);
             }
             return result;
@@ -454,10 +489,12 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 ...getExtraOptionsFromEnv(["database", "init"]),
             ]);
         },
-        async databaseInitCluster(config, sourceRoot, processName, processLevel) {
+        async databaseInitCluster(config, sourceRoot, processName, processLevel, featureFlags, logger) {
             const extraArgs = config.languages.map((language) => `--language=${language}`);
-            if (config.languages.filter(languages_1.isTracedLanguage).length > 0) {
+            const isGoExtractionReconciliationEnabled = await util.isGoExtractionReconciliationEnabled(featureFlags);
+            if (config.languages.filter((l) => (0, languages_1.isTracedLanguage)(l, isGoExtractionReconciliationEnabled, logger)).length > 0) {
                 extraArgs.push("--begin-tracing");
+                extraArgs.push(...(await (0, trap_caching_1.getTrapCachingExtractorConfigArgs)(config)));
                 if (processName !== undefined) {
                     extraArgs.push(`--trace-process-name=${processName}`);
                 }
@@ -467,10 +504,20 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                     // because that always passes in a process name.
                     extraArgs.push(`--trace-process-level=${processLevel || 3}`);
                 }
+                if (
+                // There's a bug in Lua tracing for Go on Windows in versions earlier than
+                // `CODEQL_VERSION_LUA_TRACING_GO_WINDOWS_FIXED`, so don't use Lua tracing
+                // when tracing Go on Windows on these CodeQL versions.
+                (await util.codeQlVersionAbove(this, CODEQL_VERSION_LUA_TRACER_CONFIG)) &&
+                    config.languages.includes(languages_1.Language.go) &&
+                    (0, languages_1.isTracedLanguage)(languages_1.Language.go, isGoExtractionReconciliationEnabled, logger) &&
+                    process.platform === "win32" &&
+                    !(await util.codeQlVersionAbove(this, CODEQL_VERSION_LUA_TRACING_GO_WINDOWS_FIXED))) {
+                    extraArgs.push("--no-internal-use-lua-tracing");
+                }
             }
-            if (await util.codeQlVersionAbove(codeql, CODEQL_VERSION_CONFIG_FILES)) {
-                const configLocation = path.resolve(config.tempDir, "user-config.yaml");
-                fs.writeFileSync(configLocation, yaml.dump(config.originalUserInput));
+            const configLocation = await generateCodescanningConfig(codeql, config, featureFlags);
+            if (configLocation) {
                 extraArgs.push(`--codescanning-config=${configLocation}`);
             }
             await runTool(cmd, [
@@ -497,9 +544,23 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 "-Dhttp.keepAlive=false",
                 "-Dmaven.wagon.http.pool=false",
             ].join(" ");
+            // On macOS, System Integrity Protection (SIP) typically interferes with
+            // CodeQL build tracing of protected binaries.
+            // The usual workaround is to prefix `$CODEQL_RUNNER` to build commands:
+            // `$CODEQL_RUNNER` (not to be confused with the deprecated CodeQL Runner tool)
+            // points to a simple wrapper binary included with the CLI, and the extra layer of
+            // process indirection helps the tracer bypass SIP.
+            // The above SIP workaround is *not* needed here.
+            // At the `autobuild` step in the Actions workflow, we assume the `init` step
+            // has successfully run, and will have exported `DYLD_INSERT_LIBRARIES`
+            // into the environment of subsequent steps, to activate the tracer.
+            // When `DYLD_INSERT_LIBRARIES` is set in the environment for a step,
+            // the Actions runtime introduces its own workaround for SIP
+            // (https://github.com/actions/runner/pull/416).
             await runTool(autobuildCmd);
         },
-        async extractScannedLanguage(databasePath, language) {
+        async extractScannedLanguage(config, language) {
+            const databasePath = util.getCodeQLDatabasePath(config, language);
             // Get extractor location
             let extractorPath = "";
             await new toolrunner.ToolRunner(cmd, [
@@ -526,6 +587,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             await (0, toolrunner_error_catcher_1.toolrunnerErrorCatcher)(cmd, [
                 "database",
                 "trace-command",
+                ...(await (0, trap_caching_1.getTrapCachingExtractorConfigArgsForLang)(config, language)),
                 ...getExtraOptionsFromEnv(["database", "trace-command"]),
                 databasePath,
                 "--",
@@ -560,6 +622,22 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 throw new Error(`Unexpected output from codeql resolve languages: ${e}`);
             }
         },
+        async betterResolveLanguages() {
+            const codeqlArgs = [
+                "resolve",
+                "languages",
+                "--format=betterjson",
+                "--extractor-options-verbosity=4",
+                ...getExtraOptionsFromEnv(["resolve", "languages"]),
+            ];
+            const output = await runTool(cmd, codeqlArgs);
+            try {
+                return JSON.parse(output);
+            }
+            catch (e) {
+                throw new Error(`Unexpected output from codeql resolve languages with --format=betterjson: ${e}`);
+            }
+        },
         async resolveQueries(queries, extraSearchPath) {
             const codeqlArgs = [
                 "resolve",
@@ -593,18 +671,18 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             if (extraSearchPath !== undefined) {
                 codeqlArgs.push("--additional-packs", extraSearchPath);
             }
-            if (!(await util.codeQlVersionAbove(this, CODEQL_VERSION_CONFIG_FILES))) {
+            if (querySuitePath) {
                 codeqlArgs.push(querySuitePath);
             }
             await runTool(cmd, codeqlArgs);
         },
-        async databaseInterpretResults(databasePath, querySuitePaths, sarifFile, addSnippetsFlag, threadsFlag, automationDetailsId) {
+        async databaseInterpretResults(databasePath, querySuitePaths, sarifFile, addSnippetsFlag, threadsFlag, verbosityFlag, automationDetailsId) {
             const codeqlArgs = [
                 "database",
                 "interpret-results",
                 threadsFlag,
                 "--format=sarif-latest",
-                "-v",
+                verbosityFlag,
                 `--output=${sarifFile}`,
                 addSnippetsFlag,
                 ...getExtraOptionsFromEnv(["database", "interpret-results"]),
@@ -622,7 +700,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 codeqlArgs.push("--sarif-category", automationDetailsId);
             }
             codeqlArgs.push(databasePath);
-            if (!(await util.codeQlVersionAbove(this, CODEQL_VERSION_CONFIG_FILES))) {
+            if (querySuitePaths) {
                 codeqlArgs.push(...querySuitePaths);
             }
             // capture stdout, which contains analysis summaries
@@ -646,14 +724,22 @@ async function getCodeQLForCmd(cmd, checkVersion) {
          * If no version is specified, then the latest version is
          * downloaded. The check to determine what the latest version is is done
          * each time this package is requested.
+         *
+         * Optionally, a `qlconfigFile` is included. If used, then this file
+         * is used to determine which registry each pack is downloaded from.
          */
-        async packDownload(packs) {
+        async packDownload(packs, qlconfigFile) {
+            const qlconfigArg = qlconfigFile
+                ? [`--qlconfig-file=${qlconfigFile}`]
+                : [];
             const codeqlArgs = [
                 "pack",
                 "download",
+                ...qlconfigArg,
                 "--format=json",
+                "--resolve-query-specs",
                 ...getExtraOptionsFromEnv(["pack", "download"]),
-                ...packs.map(packWithVersionToString),
+                ...packs,
             ];
             const output = await runTool(cmd, codeqlArgs);
             try {
@@ -709,9 +795,6 @@ async function getCodeQLForCmd(cmd, checkVersion) {
     }
     return codeql;
 }
-function packWithVersionToString(pack) {
-    return pack.version ? `${pack.packName}@${pack.version}` : pack.packName;
-}
 /**
  * Gets the options for `path` of `options` as an array of extra option strings.
  */
@@ -785,4 +868,77 @@ async function runTool(cmd, args = []) {
         throw new CommandInvocationError(cmd, args, exitCode, error);
     return output;
 }
+/**
+ * If appropriate, generates a code scanning configuration that is to be used for a scan.
+ * If the configuration is not to be generated, returns undefined.
+ *
+ * @param codeql The CodeQL object to use.
+ * @param config The configuration to use.
+ * @returns the path to the generated user configuration file.
+ */
+async function generateCodescanningConfig(codeql, config, featureFlags) {
+    var _a;
+    if (!(await util.useCodeScanningConfigInCli(codeql, featureFlags))) {
+        return;
+    }
+    const configLocation = path.resolve(config.tempDir, "user-config.yaml");
+    // make a copy so we can modify it
+    const augmentedConfig = cloneObject(config.originalUserInput);
+    // Inject the queries from the input
+    if (config.augmentationProperties.queriesInput) {
+        if (config.augmentationProperties.queriesInputCombines) {
+            augmentedConfig.queries = (augmentedConfig.queries || []).concat(config.augmentationProperties.queriesInput);
+        }
+        else {
+            augmentedConfig.queries = config.augmentationProperties.queriesInput;
+        }
+    }
+    if (((_a = augmentedConfig.queries) === null || _a === void 0 ? void 0 : _a.length) === 0) {
+        delete augmentedConfig.queries;
+    }
+    // Inject the packs from the input
+    if (config.augmentationProperties.packsInput) {
+        if (config.augmentationProperties.packsInputCombines) {
+            // At this point, we already know that this is a single-language analysis
+            if (Array.isArray(augmentedConfig.packs)) {
+                augmentedConfig.packs = (augmentedConfig.packs || []).concat(config.augmentationProperties.packsInput);
+            }
+            else if (!augmentedConfig.packs) {
+                augmentedConfig.packs = config.augmentationProperties.packsInput;
+            }
+            else {
+                // At this point, we know there is only one language.
+                // If there were more than one language, an error would already have been thrown.
+                const language = Object.keys(augmentedConfig.packs)[0];
+                augmentedConfig.packs[language] = augmentedConfig.packs[language].concat(config.augmentationProperties.packsInput);
+            }
+        }
+        else {
+            augmentedConfig.packs = config.augmentationProperties.packsInput;
+        }
+    }
+    if (Array.isArray(augmentedConfig.packs) && !augmentedConfig.packs.length) {
+        delete augmentedConfig.packs;
+    }
+    if (config.augmentationProperties.injectedMlQueries) {
+        // We need to inject the ML queries into the original user input before
+        // we pass this on to the CLI, to make sure these get run.
+        const packString = await util.getMlPoweredJsQueriesPack(codeql);
+        if (augmentedConfig.packs === undefined)
+            augmentedConfig.packs = [];
+        if (Array.isArray(augmentedConfig.packs)) {
+            augmentedConfig.packs.push(packString);
+        }
+        else {
+            if (!augmentedConfig.packs.javascript)
+                augmentedConfig.packs["javascript"] = [];
+            augmentedConfig.packs["javascript"].push(packString);
+        }
+    }
+    fs.writeFileSync(configLocation, yaml.dump(augmentedConfig));
+    return configLocation;
+}
+function cloneObject(obj) {
+    return JSON.parse(JSON.stringify(obj));
+}
 //# sourceMappingURL=codeql.js.map

lib/codeql.test.js

@@ -22,14 +22,20 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.stubToolRunnerConstructor = void 0;
+const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const toolcache = __importStar(require("@actions/tool-cache"));
 const ava_1 = __importDefault(require("ava"));
+const del_1 = __importDefault(require("del"));
+const yaml = __importStar(require("js-yaml"));
 const nock_1 = __importDefault(require("nock"));
 const sinon = __importStar(require("sinon"));
 const codeql = __importStar(require("./codeql"));
 const defaults = __importStar(require("./defaults.json"));
+const feature_flags_1 = require("./feature-flags");
+const languages_1 = require("./languages");
 const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const util = __importStar(require("./util"));
@@ -38,54 +44,102 @@ const util_1 = require("./util");
 const sampleApiDetails = {
     auth: "token",
     url: "https://github.com",
+    apiURL: undefined,
+    registriesAuthTokens: undefined,
 };
 const sampleGHAEApiDetails = {
     auth: "token",
     url: "https://example.githubenterprise.com",
+    apiURL: undefined,
+    registriesAuthTokens: undefined,
 };
+let stubConfig;
 ava_1.default.beforeEach(() => {
     (0, util_1.initializeEnvironment)(util_1.Mode.actions, "1.2.3");
+    stubConfig = {
+        languages: [languages_1.Language.cpp],
+        queries: {},
+        pathsIgnore: [],
+        paths: [],
+        originalUserInput: {},
+        tempDir: "",
+        codeQLCmd: "",
+        gitHubVersion: {
+            type: util.GitHubVariant.DOTCOM,
+        },
+        dbLocation: "",
+        packs: {},
+        debugMode: false,
+        debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
+        debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+        augmentationProperties: {
+            injectedMlQueries: false,
+            packsInputCombines: false,
+            queriesInputCombines: false,
+        },
+        trapCaches: {},
+        trapCacheDownloadTime: 0,
+    };
 });
+async function mockApiAndSetupCodeQL({ apiDetails, featureFlags, isPinned, tmpDir, toolsInput, version, }) {
+    var _a;
+    const platform = process.platform === "win32"
+        ? "win64"
+        : process.platform === "linux"
+            ? "linux64"
+            : "osx64";
+    const baseUrl = (_a = apiDetails === null || apiDetails === void 0 ? void 0 : apiDetails.url) !== null && _a !== void 0 ? _a : "https://example.com";
+    const relativeUrl = apiDetails
+        ? `/github/codeql-action/releases/download/${version}/codeql-bundle-${platform}.tar.gz`
+        : `/download/codeql-bundle-${version}/codeql-bundle.tar.gz`;
+    (0, nock_1.default)(baseUrl)
+        .get(relativeUrl)
+        .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle${isPinned ? "-pinned" : ""}.tar.gz`));
+    return await codeql.setupCodeQL(toolsInput ? toolsInput.input : `${baseUrl}${relativeUrl}`, apiDetails !== null && apiDetails !== void 0 ? apiDetails : sampleApiDetails, tmpDir, util.GitHubVariant.DOTCOM, featureFlags !== null && featureFlags !== void 0 ? featureFlags : (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true), false);
+}
 (0, ava_1.default)("download codeql bundle cache", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
         const versions = ["20200601", "20200610"];
         for (let i = 0; i < versions.length; i++) {
             const version = versions[i];
-            (0, nock_1.default)("https://example.com")
-                .get(`/download/codeql-bundle-${version}/codeql-bundle.tar.gz`)
-                .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-            await codeql.setupCodeQL(`https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`, sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+            const codeQLConfig = await mockApiAndSetupCodeQL({ version, tmpDir });
             t.assert(toolcache.find("CodeQL", `0.0.0-${version}`));
+            t.deepEqual(codeQLConfig.toolsVersion, version);
         }
-        const cachedVersions = toolcache.findAllVersions("CodeQL");
-        t.is(cachedVersions.length, 2);
+        t.is(toolcache.findAllVersions("CodeQL").length, 2);
     });
 });
 (0, ava_1.default)("download codeql bundle cache explicitly requested with pinned different version cached", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
-        (0, nock_1.default)("https://example.com")
-            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
-        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        const pinnedCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: "20200601",
+            isPinned: true,
+            tmpDir,
+        });
         t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
-        (0, nock_1.default)("https://example.com")
-            .get(`/download/codeql-bundle-20200610/codeql-bundle.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200610/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        t.deepEqual(pinnedCodeQLConfig.toolsVersion, "20200601");
+        const unpinnedCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: "20200610",
+            tmpDir,
+        });
         t.assert(toolcache.find("CodeQL", "0.0.0-20200610"));
+        t.deepEqual(unpinnedCodeQLConfig.toolsVersion, "20200610");
     });
 });
 (0, ava_1.default)("don't download codeql bundle cache with pinned different version cached", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
-        (0, nock_1.default)("https://example.com")
-            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
-        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        const pinnedCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: "20200601",
+            isPinned: true,
+            tmpDir,
+        });
         t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
-        await codeql.setupCodeQL(undefined, sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        t.deepEqual(pinnedCodeQLConfig.toolsVersion, "20200601");
+        const codeQLConfig = await codeql.setupCodeQL(undefined, sampleApiDetails, tmpDir, util.GitHubVariant.DOTCOM, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true), false);
+        t.deepEqual(codeQLConfig.toolsVersion, "0.0.0-20200601");
         const cachedVersions = toolcache.findAllVersions("CodeQL");
         t.is(cachedVersions.length, 1);
     });
@@ -93,20 +147,19 @@ ava_1.default.beforeEach(() => {
 (0, ava_1.default)("download codeql bundle cache with different version cached (not pinned)", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
-        (0, nock_1.default)("https://example.com")
-            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        const cachedCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: "20200601",
+            tmpDir,
+        });
         t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
-        const platform = process.platform === "win32"
-            ? "win64"
-            : process.platform === "linux"
-                ? "linux64"
-                : "osx64";
-        (0, nock_1.default)("https://github.com")
-            .get(`/github/codeql-action/releases/download/${defaults.bundleVersion}/codeql-bundle-${platform}.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-        await codeql.setupCodeQL(undefined, sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        t.deepEqual(cachedCodeQLConfig.toolsVersion, "20200601");
+        const codeQLConfig = await mockApiAndSetupCodeQL({
+            version: defaults.bundleVersion,
+            tmpDir,
+            apiDetails: sampleApiDetails,
+            toolsInput: { input: undefined },
+        });
+        t.deepEqual(codeQLConfig.toolsVersion, defaults.bundleVersion.replace("codeql-bundle-", ""));
         const cachedVersions = toolcache.findAllVersions("CodeQL");
         t.is(cachedVersions.length, 2);
     });
@@ -114,24 +167,56 @@ ava_1.default.beforeEach(() => {
 (0, ava_1.default)('download codeql bundle cache with pinned different version cached if "latest" tools specified', async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
-        (0, nock_1.default)("https://example.com")
-            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
-        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        const pinnedCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: "20200601",
+            isPinned: true,
+            tmpDir,
+        });
         t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
-        const platform = process.platform === "win32"
-            ? "win64"
-            : process.platform === "linux"
-                ? "linux64"
-                : "osx64";
-        (0, nock_1.default)("https://github.com")
-            .get(`/github/codeql-action/releases/download/${defaults.bundleVersion}/codeql-bundle-${platform}.tar.gz`)
-            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-        await codeql.setupCodeQL("latest", sampleApiDetails, tmpDir, tmpDir, util.GitHubVariant.DOTCOM, (0, logging_1.getRunnerLogger)(true), false);
+        t.deepEqual(pinnedCodeQLConfig.toolsVersion, "20200601");
+        const latestCodeQLConfig = await mockApiAndSetupCodeQL({
+            version: defaults.bundleVersion,
+            apiDetails: sampleApiDetails,
+            toolsInput: { input: "latest" },
+            tmpDir,
+        });
+        t.deepEqual(latestCodeQLConfig.toolsVersion, defaults.bundleVersion.replace("codeql-bundle-", ""));
         const cachedVersions = toolcache.findAllVersions("CodeQL");
         t.is(cachedVersions.length, 2);
     });
 });
+const TOOLCACHE_BYPASS_TEST_CASES = [
+    [true, undefined, true],
+    [false, undefined, false],
+    [
+        true,
+        "https://github.com/github/codeql-action/releases/download/codeql-bundle-20200601/codeql-bundle.tar.gz",
+        false,
+    ],
+];
+for (const [isFeatureFlagEnabled, toolsInput, shouldToolcacheBeBypassed,] of TOOLCACHE_BYPASS_TEST_CASES) {
+    (0, ava_1.default)(`download codeql bundle ${shouldToolcacheBeBypassed ? "bypasses" : "does not bypass"} toolcache when feature flag ${isFeatureFlagEnabled ? "enabled" : "disabled"} and tools: ${toolsInput} passed`, async (t) => {
+        await util.withTmpDir(async (tmpDir) => {
+            (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
+            await mockApiAndSetupCodeQL({
+                version: "codeql-bundle-20200601",
+                apiDetails: sampleApiDetails,
+                isPinned: true,
+                tmpDir,
+            });
+            t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
+            await mockApiAndSetupCodeQL({
+                version: defaults.bundleVersion,
+                apiDetails: sampleApiDetails,
+                featureFlags: (0, feature_flags_1.createFeatureFlags)(isFeatureFlagEnabled ? [feature_flags_1.FeatureFlag.BypassToolcacheEnabled] : []),
+                toolsInput: { input: toolsInput },
+                tmpDir,
+            });
+            const cachedVersions = toolcache.findAllVersions("CodeQL");
+            t.is(cachedVersions.length, shouldToolcacheBeBypassed ? 2 : 1);
+        });
+    });
+}
 (0, ava_1.default)("download codeql bundle from github ae endpoint", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
         (0, testing_utils_1.setupActionsVars)(tmpDir, tmpDir);
@@ -155,7 +240,7 @@ ava_1.default.beforeEach(() => {
         (0, nock_1.default)("https://example.githubenterprise.com")
             .get(`/github/codeql-action/releases/download/${defaults.bundleVersion}/${codeQLBundleName}`)
             .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
-        await codeql.setupCodeQL(undefined, sampleGHAEApiDetails, tmpDir, tmpDir, util.GitHubVariant.GHAE, (0, logging_1.getRunnerLogger)(true), false);
+        await codeql.setupCodeQL(undefined, sampleGHAEApiDetails, tmpDir, util.GitHubVariant.GHAE, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true), false);
         const cachedVersions = toolcache.findAllVersions("CodeQL");
         t.is(cachedVersions.length, 1);
     });
@@ -223,16 +308,269 @@ ava_1.default.beforeEach(() => {
     const runnerConstructorStub = stubToolRunnerConstructor();
     const codeqlObject = await codeql.getCodeQLForTesting();
     sinon.stub(codeqlObject, "getVersion").resolves("2.7.0");
-    await codeqlObject.databaseInterpretResults("", [], "", "", "", "");
+    await codeqlObject.databaseInterpretResults("", [], "", "", "", "-v", "");
     t.false(runnerConstructorStub.firstCall.args[1].includes("--sarif-add-query-help"), "--sarif-add-query-help should be absent, but it is present");
 });
 (0, ava_1.default)("databaseInterpretResults() sets --sarif-add-query-help for 2.7.1", async (t) => {
     const runnerConstructorStub = stubToolRunnerConstructor();
     const codeqlObject = await codeql.getCodeQLForTesting();
     sinon.stub(codeqlObject, "getVersion").resolves("2.7.1");
-    await codeqlObject.databaseInterpretResults("", [], "", "", "", "");
+    await codeqlObject.databaseInterpretResults("", [], "", "", "", "-v", "");
     t.true(runnerConstructorStub.firstCall.args[1].includes("--sarif-add-query-help"), "--sarif-add-query-help should be present, but it is absent");
 });
+(0, ava_1.default)("databaseInitCluster() without injected codescanning config", async (t) => {
+    await util.withTmpDir(async (tempDir) => {
+        const runnerConstructorStub = stubToolRunnerConstructor();
+        const codeqlObject = await codeql.getCodeQLForTesting();
+        sinon.stub(codeqlObject, "getVersion").resolves("2.8.1");
+        const thisStubConfig = {
+            ...stubConfig,
+            tempDir,
+            augmentationProperties: {
+                injectedMlQueries: false,
+                queriesInputCombines: false,
+                packsInputCombines: false,
+            },
+        };
+        await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const args = runnerConstructorStub.firstCall.args[1];
+        // should NOT have used an config file
+        const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
+        t.falsy(configArg, "Should have injected a codescanning config");
+    });
+});
+// Test macro for ensuring different variants of injected augmented configurations
+const injectedConfigMacro = ava_1.default.macro({
+    exec: async (t, augmentationProperties, configOverride, expectedConfig) => {
+        const origCODEQL_PASS_CONFIG_TO_CLI = process.env.CODEQL_PASS_CONFIG_TO_CLI;
+        process.env["CODEQL_PASS_CONFIG_TO_CLI"] = "true";
+        try {
+            await util.withTmpDir(async (tempDir) => {
+                const runnerConstructorStub = stubToolRunnerConstructor();
+                const codeqlObject = await codeql.getCodeQLForTesting();
+                sinon
+                    .stub(codeqlObject, "getVersion")
+                    .resolves(codeql.CODEQL_VERSION_CONFIG_FILES);
+                const thisStubConfig = {
+                    ...stubConfig,
+                    ...configOverride,
+                    tempDir,
+                    augmentationProperties,
+                };
+                await codeqlObject.databaseInitCluster(thisStubConfig, "", undefined, undefined, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+                const args = runnerConstructorStub.firstCall.args[1];
+                // should have used an config file
+                const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
+                t.truthy(configArg, "Should have injected a codescanning config");
+                const configFile = configArg.split("=")[1];
+                const augmentedConfig = yaml.load(fs.readFileSync(configFile, "utf8"));
+                t.deepEqual(augmentedConfig, expectedConfig);
+                await (0, del_1.default)(configFile, { force: true });
+            });
+        }
+        finally {
+            process.env["CODEQL_PASS_CONFIG_TO_CLI"] = origCODEQL_PASS_CONFIG_TO_CLI;
+        }
+    },
+    title: (providedTitle = "") => `databaseInitCluster() injected config: ${providedTitle}`,
+});
+(0, ava_1.default)("basic", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+}, {}, {});
+(0, ava_1.default)("injected ML queries", injectedConfigMacro, {
+    injectedMlQueries: true,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+}, {}, {
+    packs: ["codeql/javascript-experimental-atm-queries@~0.3.0"],
+});
+(0, ava_1.default)("injected ML queries with existing packs", injectedConfigMacro, {
+    injectedMlQueries: true,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+}, {
+    originalUserInput: {
+        packs: { javascript: ["codeql/something-else"] },
+    },
+}, {
+    packs: {
+        javascript: [
+            "codeql/something-else",
+            "codeql/javascript-experimental-atm-queries@~0.3.0",
+        ],
+    },
+});
+(0, ava_1.default)("injected ML queries with existing packs of different language", injectedConfigMacro, {
+    injectedMlQueries: true,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+}, {
+    originalUserInput: {
+        packs: { cpp: ["codeql/something-else"] },
+    },
+}, {
+    packs: {
+        cpp: ["codeql/something-else"],
+        javascript: ["codeql/javascript-experimental-atm-queries@~0.3.0"],
+    },
+});
+(0, ava_1.default)("injected packs from input", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    packsInput: ["xxx", "yyy"],
+}, {}, {
+    packs: ["xxx", "yyy"],
+});
+(0, ava_1.default)("injected packs from input with existing packs combines", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: true,
+    packsInput: ["xxx", "yyy"],
+}, {
+    originalUserInput: {
+        packs: {
+            cpp: ["codeql/something-else"],
+        },
+    },
+}, {
+    packs: {
+        cpp: ["codeql/something-else", "xxx", "yyy"],
+    },
+});
+(0, ava_1.default)("injected packs from input with existing packs overrides", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    packsInput: ["xxx", "yyy"],
+}, {
+    originalUserInput: {
+        packs: {
+            cpp: ["codeql/something-else"],
+        },
+    },
+}, {
+    packs: ["xxx", "yyy"],
+});
+(0, ava_1.default)("injected packs from input with existing packs overrides and ML model inject", injectedConfigMacro, {
+    injectedMlQueries: true,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    packsInput: ["xxx", "yyy"],
+}, {
+    originalUserInput: {
+        packs: {
+            cpp: ["codeql/something-else"],
+        },
+    },
+}, {
+    packs: ["xxx", "yyy", "codeql/javascript-experimental-atm-queries@~0.3.0"],
+});
+// similar, but with queries
+(0, ava_1.default)("injected queries from input", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    queriesInput: [{ uses: "xxx" }, { uses: "yyy" }],
+}, {}, {
+    queries: [
+        {
+            uses: "xxx",
+        },
+        {
+            uses: "yyy",
+        },
+    ],
+});
+(0, ava_1.default)("injected queries from input overrides", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    queriesInput: [{ uses: "xxx" }, { uses: "yyy" }],
+}, {
+    originalUserInput: {
+        queries: [{ uses: "zzz" }],
+    },
+}, {
+    queries: [
+        {
+            uses: "xxx",
+        },
+        {
+            uses: "yyy",
+        },
+    ],
+});
+(0, ava_1.default)("injected queries from input combines", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: true,
+    packsInputCombines: false,
+    queriesInput: [{ uses: "xxx" }, { uses: "yyy" }],
+}, {
+    originalUserInput: {
+        queries: [{ uses: "zzz" }],
+    },
+}, {
+    queries: [
+        {
+            uses: "zzz",
+        },
+        {
+            uses: "xxx",
+        },
+        {
+            uses: "yyy",
+        },
+    ],
+});
+(0, ava_1.default)("injected queries from input combines 2", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: true,
+    packsInputCombines: true,
+    queriesInput: [{ uses: "xxx" }, { uses: "yyy" }],
+}, {}, {
+    queries: [
+        {
+            uses: "xxx",
+        },
+        {
+            uses: "yyy",
+        },
+    ],
+});
+(0, ava_1.default)("injected queries and packs, but empty", injectedConfigMacro, {
+    injectedMlQueries: false,
+    queriesInputCombines: true,
+    packsInputCombines: true,
+    queriesInput: [],
+    packsInput: [],
+}, {
+    originalUserInput: {
+        packs: [],
+        queries: [],
+    },
+}, {});
+(0, ava_1.default)("does not use injected config", async (t) => {
+    const origCODEQL_PASS_CONFIG_TO_CLI = process.env.CODEQL_PASS_CONFIG_TO_CLI;
+    process.env["CODEQL_PASS_CONFIG_TO_CLI"] = "false";
+    try {
+        const runnerConstructorStub = stubToolRunnerConstructor();
+        const codeqlObject = await codeql.getCodeQLForTesting();
+        sinon
+            .stub(codeqlObject, "getVersion")
+            .resolves(codeql.CODEQL_VERSION_CONFIG_FILES);
+        await codeqlObject.databaseInitCluster(stubConfig, "", undefined, undefined, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const args = runnerConstructorStub.firstCall.args[1];
+        // should have used an config file
+        const configArg = args.find((arg) => arg.startsWith("--codescanning-config="));
+        t.falsy(configArg, "Should NOT have injected a codescanning config");
+    }
+    finally {
+        process.env["CODEQL_PASS_CONFIG_TO_CLI"] = origCODEQL_PASS_CONFIG_TO_CLI;
+    }
+});
 function stubToolRunnerConstructor() {
     const runnerObjectStub = sinon.createStubInstance(toolrunner.ToolRunner);
     runnerObjectStub.exec.resolves(0);
@@ -240,4 +578,5 @@ function stubToolRunnerConstructor() {
     runnerConstructorStub.returns(runnerObjectStub);
     return runnerConstructorStub;
 }
+exports.stubToolRunnerConstructor = stubToolRunnerConstructor;
 //# sourceMappingURL=codeql.test.js.map

lib/config-utils.js

@@ -19,9 +19,11 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getConfig = exports.getPathToParsedConfigFile = exports.initConfig = exports.parsePacks = exports.parsePacksFromConfig = exports.getDefaultConfig = exports.getUnknownLanguagesError = exports.getNoLanguagesError = exports.getConfigFileDirectoryGivenMessage = exports.getConfigFileFormatInvalidMessage = exports.getConfigFileRepoFormatInvalidMessage = exports.getConfigFileDoesNotExistErrorMessage = exports.getConfigFileOutsideWorkspaceErrorMessage = exports.getLocalPathDoesNotExist = exports.getLocalPathOutsideOfRepository = exports.getPacksStrInvalid = exports.getPacksInvalid = exports.getPacksInvalidSplit = exports.getPacksRequireLanguage = exports.getPathsInvalid = exports.getPathsIgnoreInvalid = exports.getQueryUsesInvalid = exports.getQueriesInvalid = exports.getDisableDefaultQueriesInvalid = exports.getNameInvalid = exports.validateAndSanitisePath = void 0;
+exports.downloadPacks = exports.getConfig = exports.getPathToParsedConfigFile = exports.initConfig = exports.parsePacks = exports.validatePackSpecification = exports.prettyPrintPack = exports.parsePacksSpecification = exports.parsePacksFromConfig = exports.calculateAugmentation = exports.getDefaultConfig = exports.getUnknownLanguagesError = exports.getNoLanguagesError = exports.getConfigFileDirectoryGivenMessage = exports.getConfigFileFormatInvalidMessage = exports.getConfigFileRepoFormatInvalidMessage = exports.getConfigFileDoesNotExistErrorMessage = exports.getConfigFileOutsideWorkspaceErrorMessage = exports.getLocalPathDoesNotExist = exports.getLocalPathOutsideOfRepository = exports.getPacksStrInvalid = exports.getPacksInvalid = exports.getPacksInvalidSplit = exports.getPathsInvalid = exports.getPathsIgnoreInvalid = exports.getQueryUsesInvalid = exports.getQueriesMissingUses = exports.getQueriesInvalid = exports.getDisableDefaultQueriesInvalid = exports.getNameInvalid = exports.validateAndSanitisePath = exports.defaultAugmentationProperties = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+// We need to import `performance` on Node 12
+const perf_hooks_1 = require("perf_hooks");
 const yaml = __importStar(require("js-yaml"));
 const semver = __importStar(require("semver"));
 const api = __importStar(require("./api-client"));
@@ -29,6 +31,7 @@ const codeql_1 = require("./codeql");
 const externalQueries = __importStar(require("./external-queries"));
 const feature_flags_1 = require("./feature-flags");
 const languages_1 = require("./languages");
+const trap_caching_1 = require("./trap-caching");
 const util_1 = require("./util");
 // Property names from the user-supplied config file.
 const NAME_PROPERTY = "name";
@@ -38,6 +41,17 @@ const QUERIES_USES_PROPERTY = "uses";
 const PATHS_IGNORE_PROPERTY = "paths-ignore";
 const PATHS_PROPERTY = "paths";
 const PACKS_PROPERTY = "packs";
+/**
+ * The default, empty augmentation properties. This is most useeful
+ * for tests.
+ */
+exports.defaultAugmentationProperties = {
+    queriesInputCombines: false,
+    packsInputCombines: false,
+    injectedMlQueries: false,
+    packsInput: undefined,
+    queriesInput: undefined,
+};
 /**
  * A list of queries from https://github.com/github/codeql that
  * we don't want to run. Disabling them here is a quicker alternative to
@@ -118,9 +132,11 @@ const builtinSuites = ["security-extended", "security-and-quality"];
 /**
  * Determine the set of queries associated with suiteName's suites and add them to resultMap.
  * Throws an error if suiteName is not a valid builtin suite.
+ * May inject ML queries, and the return value will declare if this was done.
  */
 async function addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, suiteName, featureFlags, configFile) {
     var _a;
+    let injectedMlQueries = false;
     const found = builtinSuites.find((suite) => suite === suiteName);
     if (!found) {
         throw new Error(getQueryUsesInvalid(configFile, suiteName));
@@ -128,18 +144,27 @@ async function addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, suite
     // If we're running the JavaScript security-extended analysis (or a superset of it), the repo is
     // opted into the ML-powered queries beta, and a user hasn't already added the ML-powered query
     // pack, then add the ML-powered query pack so that we run ML-powered queries.
-    if (languages.includes("javascript") &&
+    if (
+    // Only run ML-powered queries on Windows if we have a CLI that supports it.
+    (process.platform !== "win32" ||
+        (await (0, util_1.codeQlVersionAbove)(codeQL, codeql_1.CODEQL_VERSION_ML_POWERED_QUERIES_WINDOWS))) &&
+        languages.includes("javascript") &&
         (found === "security-extended" || found === "security-and-quality") &&
-        !((_a = packs.javascript) === null || _a === void 0 ? void 0 : _a.some((pack) => pack.packName === util_1.ML_POWERED_JS_QUERIES_PACK.packName)) &&
+        !((_a = packs.javascript) === null || _a === void 0 ? void 0 : _a.some(isMlPoweredJsQueriesPack)) &&
         (await featureFlags.getValue(feature_flags_1.FeatureFlag.MlPoweredQueriesEnabled)) &&
         (await (0, util_1.codeQlVersionAbove)(codeQL, codeql_1.CODEQL_VERSION_ML_POWERED_QUERIES))) {
         if (!packs.javascript) {
             packs.javascript = [];
         }
-        packs.javascript.push(util_1.ML_POWERED_JS_QUERIES_PACK);
+        packs.javascript.push(await (0, util_1.getMlPoweredJsQueriesPack)(codeQL));
+        injectedMlQueries = true;
     }
     const suites = languages.map((l) => `${l}-${suiteName}.qls`);
     await runResolveQueries(codeQL, resultMap, suites, undefined);
+    return injectedMlQueries;
+}
+function isMlPoweredJsQueriesPack(pack) {
+    return parsePacksSpecification(pack).name === util_1.ML_POWERED_JS_QUERIES_PACK_NAME;
 }
 /**
  * Retrieve the set of queries at localQueryPath and add them to resultMap.
@@ -196,6 +221,11 @@ async function addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetail
  * parsing the 'uses' actions in the workflow file. So it can handle
  * local paths starting with './', or references to remote repos, or
  * a finite set of hardcoded terms for builtin suites.
+ *
+ * This may inject ML queries into the packs to use, and the return value will
+ * declare if this was done.
+ *
+ * @returns whether or not we injected ML queries into the packs
  */
 async function parseQueryUses(languages, codeQL, resultMap, packs, queryUses, tempDir, workspacePath, apiDetails, featureFlags, logger, configFile) {
     queryUses = queryUses.trim();
@@ -205,15 +235,15 @@ async function parseQueryUses(languages, codeQL, resultMap, packs, queryUses, te
     // Check for the local path case before we start trying to parse the repository name
     if (queryUses.startsWith("./")) {
         await addLocalQueries(codeQL, resultMap, queryUses.slice(2), workspacePath, configFile);
-        return;
+        return false;
     }
     // Check for one of the builtin suites
     if (queryUses.indexOf("/") === -1 && queryUses.indexOf("@") === -1) {
-        await addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, queryUses, featureFlags, configFile);
-        return;
+        return await addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, queryUses, featureFlags, configFile);
     }
     // Otherwise, must be a reference to another repo
     await addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetails, logger, configFile);
+    return false;
 }
 // Regex validating stars in paths or paths-ignore entries.
 // The intention is to only allow ** to appear when immediately
@@ -275,6 +305,10 @@ function getQueriesInvalid(configFile) {
     return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, "must be an array");
 }
 exports.getQueriesInvalid = getQueriesInvalid;
+function getQueriesMissingUses(configFile) {
+    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, "must be an array, with each entry having a 'uses' property");
+}
+exports.getQueriesMissingUses = getQueriesMissingUses;
 function getQueryUsesInvalid(configFile, queryUses) {
     return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `must be a built-in suite (${builtinSuites.join(" or ")}), a relative path, or be of the form "owner/repo[/path]@ref"${queryUses !== undefined ? `\n Found: ${queryUses}` : ""}`);
 }
@@ -288,9 +322,8 @@ function getPathsInvalid(configFile) {
 }
 exports.getPathsInvalid = getPathsInvalid;
 function getPacksRequireLanguage(lang, configFile) {
-    return getConfigFilePropertyError(configFile, PACKS_PROPERTY, `has "${lang}", but it is not one of the languages to analyze`);
+    return getConfigFilePropertyError(configFile, PACKS_PROPERTY, `has "${lang}", but it is not a valid language.`);
 }
-exports.getPacksRequireLanguage = getPacksRequireLanguage;
 function getPacksInvalidSplit(configFile) {
     return getConfigFilePropertyError(configFile, PACKS_PROPERTY, "must split packages by language");
 }
@@ -422,12 +455,15 @@ async function getLanguages(codeQL, languagesInput, repository, apiDetails, logg
     return parsedLanguages;
 }
 async function addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, resultMap, packs, tempDir, workspacePath, apiDetails, featureFlags, logger) {
+    let injectedMlQueries = false;
     queriesInput = queriesInput.trim();
     // "+" means "don't override config file" - see shouldAddConfigFileQueries
     queriesInput = queriesInput.replace(/^\+/, "");
     for (const query of queriesInput.split(",")) {
-        await parseQueryUses(languages, codeQL, resultMap, packs, query, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        const didInject = await parseQueryUses(languages, codeQL, resultMap, packs, query, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        injectedMlQueries = injectedMlQueries || didInject;
     }
+    return injectedMlQueries;
 }
 // Returns true if either no queries were provided in the workflow.
 // or if the queries in the workflow were provided in "additive" mode,
@@ -442,8 +478,7 @@ function shouldAddConfigFileQueries(queriesInput) {
 /**
  * Get the default config for when the user has not supplied one.
  */
-async function getDefaultConfig(languagesInput, queriesInput, packsInput, dbLocation, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, toolCacheDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
-    var _a;
+async function getDefaultConfig(languagesInput, rawQueriesInput, rawPacksInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
     const languages = await getLanguages(codeQL, languagesInput, repository, apiDetails, logger);
     const queries = {};
     for (const language of languages) {
@@ -453,10 +488,17 @@ async function getDefaultConfig(languagesInput, queriesInput, packsInput, dbLoca
         };
     }
     await addDefaultQueries(codeQL, languages, queries);
-    const packs = (_a = parsePacksFromInput(packsInput, languages)) !== null && _a !== void 0 ? _a : {};
-    if (queriesInput) {
-        await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
+    const augmentationProperties = calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
+    const packs = augmentationProperties.packsInput
+        ? {
+            [languages[0]]: augmentationProperties.packsInput,
+        }
+        : {};
+    if (rawQueriesInput) {
+        augmentationProperties.injectedMlQueries =
+            await addQueriesAndPacksFromWorkflow(codeQL, rawQueriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
     }
+    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logger);
     return {
         languages,
         queries,
@@ -465,20 +507,32 @@ async function getDefaultConfig(languagesInput, queriesInput, packsInput, dbLoca
         packs,
         originalUserInput: {},
         tempDir,
-        toolCacheDir,
         codeQLCmd: codeQL.getPath(),
         gitHubVersion,
         dbLocation: dbLocationOrDefault(dbLocation, tempDir),
         debugMode,
         debugArtifactName,
         debugDatabaseName,
+        augmentationProperties,
+        trapCaches,
+        trapCacheDownloadTime,
     };
 }
 exports.getDefaultConfig = getDefaultConfig;
+async function downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logger) {
+    let trapCaches = {};
+    let trapCacheDownloadTime = 0;
+    if (trapCachingEnabled) {
+        const start = perf_hooks_1.performance.now();
+        trapCaches = await (0, trap_caching_1.downloadTrapCaches)(codeQL, languages, logger);
+        trapCacheDownloadTime = perf_hooks_1.performance.now() - start;
+    }
+    return { trapCaches, trapCacheDownloadTime };
+}
 /**
  * Load the config from the given file.
  */
-async function loadConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, toolCacheDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
+async function loadConfig(languagesInput, rawQueriesInput, rawPacksInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
     var _a;
     let parsedYAML;
     if (isLocal(configFile)) {
@@ -519,24 +573,25 @@ async function loadConfig(languagesInput, queriesInput, packsInput, configFile,
     if (!disableDefaultQueries) {
         await addDefaultQueries(codeQL, languages, queries);
     }
-    const packs = parsePacks((_a = parsedYAML[PACKS_PROPERTY]) !== null && _a !== void 0 ? _a : {}, packsInput, languages, configFile);
+    const augmentationProperties = calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
+    const packs = parsePacks((_a = parsedYAML[PACKS_PROPERTY]) !== null && _a !== void 0 ? _a : {}, rawPacksInput, augmentationProperties.packsInputCombines, languages, configFile, logger);
     // If queries were provided using `with` in the action configuration,
     // they should take precedence over the queries in the config file
     // unless they're prefixed with "+", in which case they supplement those
     // in the config file.
-    if (queriesInput) {
-        await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
+    if (rawQueriesInput) {
+        augmentationProperties.injectedMlQueries =
+            await addQueriesAndPacksFromWorkflow(codeQL, rawQueriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
     }
-    if (shouldAddConfigFileQueries(queriesInput) &&
+    if (shouldAddConfigFileQueries(rawQueriesInput) &&
         QUERIES_PROPERTY in parsedYAML) {
         const queriesArr = parsedYAML[QUERIES_PROPERTY];
         if (!Array.isArray(queriesArr)) {
             throw new Error(getQueriesInvalid(configFile));
         }
         for (const query of queriesArr) {
-            if (!(QUERIES_USES_PROPERTY in query) ||
-                typeof query[QUERIES_USES_PROPERTY] !== "string") {
-                throw new Error(getQueryUsesInvalid(configFile));
+            if (typeof query[QUERIES_USES_PROPERTY] !== "string") {
+                throw new Error(getQueriesMissingUses(configFile));
             }
             await parseQueryUses(languages, codeQL, queries, packs, query[QUERIES_USES_PROPERTY], tempDir, workspacePath, apiDetails, featureFlags, logger, configFile);
         }
@@ -563,6 +618,7 @@ async function loadConfig(languagesInput, queriesInput, packsInput, configFile,
             paths.push(validateAndSanitisePath(includePath, PATHS_PROPERTY, configFile, logger));
         }
     }
+    const { trapCaches, trapCacheDownloadTime } = await downloadCacheWithTime(trapCachingEnabled, codeQL, languages, logger);
     return {
         languages,
         queries,
@@ -571,15 +627,62 @@ async function loadConfig(languagesInput, queriesInput, packsInput, configFile,
         packs,
         originalUserInput: parsedYAML,
         tempDir,
-        toolCacheDir,
         codeQLCmd: codeQL.getPath(),
         gitHubVersion,
         dbLocation: dbLocationOrDefault(dbLocation, tempDir),
         debugMode,
         debugArtifactName,
         debugDatabaseName,
+        augmentationProperties,
+        trapCaches,
+        trapCacheDownloadTime,
     };
 }
+/**
+ * Calculates how the codeql config file needs to be augmented before passing
+ * it to the CLI. The reason this is necessary is the codeql-action can be called
+ * with extra inputs from the workflow. These inputs are not part of the config
+ * and the CLI does not know about these inputs so we need to inject them into
+ * the config file sent to the CLI.
+ *
+ * @param rawPacksInput The packs input from the action configuration.
+ * @param rawQueriesInput The queries input from the action configuration.
+ * @param languages The languages that the config file is for. If the packs input
+ *    is non-empty, then there must be exactly one language. Otherwise, an
+ *    error is thrown.
+ *
+ * @returns The properties that need to be augmented in the config file.
+ *
+ * @throws An error if the packs input is non-empty and the languages input does
+ *     not have exactly one language.
+ */
+// exported for testing.
+function calculateAugmentation(rawPacksInput, rawQueriesInput, languages) {
+    const packsInputCombines = shouldCombine(rawPacksInput);
+    const packsInput = parsePacksFromInput(rawPacksInput, languages, packsInputCombines);
+    const queriesInputCombines = shouldCombine(rawQueriesInput);
+    const queriesInput = parseQueriesFromInput(rawQueriesInput, queriesInputCombines);
+    return {
+        injectedMlQueries: false,
+        packsInputCombines,
+        packsInput: packsInput === null || packsInput === void 0 ? void 0 : packsInput[languages[0]],
+        queriesInput,
+        queriesInputCombines,
+    };
+}
+exports.calculateAugmentation = calculateAugmentation;
+function parseQueriesFromInput(rawQueriesInput, queriesInputCombines) {
+    if (!rawQueriesInput) {
+        return undefined;
+    }
+    const trimmedInput = queriesInputCombines
+        ? rawQueriesInput.trim().slice(1).trim()
+        : rawQueriesInput === null || rawQueriesInput === void 0 ? void 0 : rawQueriesInput.trim();
+    if (queriesInputCombines && trimmedInput.length === 0) {
+        throw new Error(getConfigFilePropertyError(undefined, "queries", "A '+' was used in the 'queries' input to specify that you wished to add some packs to your CodeQL analysis. However, no packs were specified. Please either remove the '+' or specify some packs."));
+    }
+    return trimmedInput.split(",").map((query) => ({ uses: query.trim() }));
+}
 /**
  * Pack names must be in the form of `scope/name`, with only alpha-numeric characters,
  * and `-` allowed as long as not the first or last char.
@@ -591,7 +694,7 @@ const PACK_IDENTIFIER_PATTERN = (function () {
     return new RegExp(`^${component}/${component}$`);
 })();
 // Exported for testing
-function parsePacksFromConfig(packsByLanguage, languages, configFile) {
+function parsePacksFromConfig(packsByLanguage, languages, configFile, logger) {
     const packs = {};
     if (Array.isArray(packsByLanguage)) {
         if (languages.length === 1) {
@@ -611,18 +714,23 @@ function parsePacksFromConfig(packsByLanguage, languages, configFile) {
             throw new Error(getPacksInvalid(configFile));
         }
         if (!languages.includes(lang)) {
-            throw new Error(getPacksRequireLanguage(lang, configFile));
-        }
-        packs[lang] = [];
-        for (const packStr of packsArr) {
-            packs[lang].push(toPackWithVersion(packStr, configFile));
+            // This particular language is not being analyzed in this run.
+            if (languages_1.Language[lang]) {
+                logger.info(`Ignoring packs for ${lang} since this language is not being analyzed in this run.`);
+                continue;
+            }
+            else {
+                // This language is invalid, probably a misspelling
+                throw new Error(getPacksRequireLanguage(configFile, lang));
+            }
         }
+        packs[lang] = packsArr.map((packStr) => validatePackSpecification(packStr, configFile));
     }
     return packs;
 }
 exports.parsePacksFromConfig = parsePacksFromConfig;
-function parsePacksFromInput(packsInput, languages) {
-    if (!(packsInput === null || packsInput === void 0 ? void 0 : packsInput.trim())) {
+function parsePacksFromInput(rawPacksInput, languages, packsInputCombines) {
+    if (!(rawPacksInput === null || rawPacksInput === void 0 ? void 0 : rawPacksInput.trim())) {
         return undefined;
     }
     if (languages.length > 1) {
@@ -631,56 +739,128 @@ function parsePacksFromInput(packsInput, languages) {
     else if (languages.length === 0) {
         throw new Error("No languages specified. Cannot process the packs input.");
     }
-    packsInput = packsInput.trim();
-    if (packsInput.startsWith("+")) {
-        packsInput = packsInput.substring(1).trim();
-        if (!packsInput) {
-            throw new Error("A '+' was used in the 'packs' input to specify that you wished to add some packs to your CodeQL analysis. However, no packs were specified. Please either remove the '+' or specify some packs.");
+    rawPacksInput = rawPacksInput.trim();
+    if (packsInputCombines) {
+        rawPacksInput = rawPacksInput.trim().substring(1).trim();
+        if (!rawPacksInput) {
+            throw new Error(getConfigFilePropertyError(undefined, "packs", "A '+' was used in the 'packs' input to specify that you wished to add some packs to your CodeQL analysis. However, no packs were specified. Please either remove the '+' or specify some packs."));
         }
     }
     return {
-        [languages[0]]: packsInput.split(",").reduce((packs, pack) => {
-            packs.push(toPackWithVersion(pack, ""));
+        [languages[0]]: rawPacksInput.split(",").reduce((packs, pack) => {
+            packs.push(validatePackSpecification(pack, ""));
             return packs;
         }, []),
     };
 }
-function toPackWithVersion(packStr, configFile) {
+/**
+ * Validates that this package specification is syntactically correct.
+ * It may not point to any real package, but after this function returns
+ * without throwing, we are guaranteed that the package specification
+ * is roughly correct.
+ *
+ * The CLI itself will do a more thorough validation of the package
+ * specification.
+ *
+ * A package specification looks like this:
+ *
+ * `scope/name@version:path`
+ *
+ * Version and path are optional.
+ *
+ * @param packStr the package specification to verify.
+ * @param configFile Config file to use for error reporting
+ */
+function parsePacksSpecification(packStr, configFile) {
     if (typeof packStr !== "string") {
         throw new Error(getPacksStrInvalid(packStr, configFile));
     }
-    const nameWithVersion = packStr.trim().split("@");
-    let version;
-    if (nameWithVersion.length > 2 ||
-        !PACK_IDENTIFIER_PATTERN.test(nameWithVersion[0])) {
+    packStr = packStr.trim();
+    const atIndex = packStr.indexOf("@");
+    const colonIndex = packStr.indexOf(":", atIndex);
+    const packStart = 0;
+    const versionStart = atIndex + 1 || undefined;
+    const pathStart = colonIndex + 1 || undefined;
+    const packEnd = Math.min(atIndex > 0 ? atIndex : Infinity, colonIndex > 0 ? colonIndex : Infinity, packStr.length);
+    const versionEnd = versionStart
+        ? Math.min(colonIndex > 0 ? colonIndex : Infinity, packStr.length)
+        : undefined;
+    const pathEnd = pathStart ? packStr.length : undefined;
+    const packName = packStr.slice(packStart, packEnd).trim();
+    const version = versionStart
+        ? packStr.slice(versionStart, versionEnd).trim()
+        : undefined;
+    const packPath = pathStart
+        ? packStr.slice(pathStart, pathEnd).trim()
+        : undefined;
+    if (!PACK_IDENTIFIER_PATTERN.test(packName)) {
         throw new Error(getPacksStrInvalid(packStr, configFile));
     }
-    else if (nameWithVersion.length === 2) {
-        version = semver.clean(nameWithVersion[1]) || undefined;
-        if (!version) {
+    if (version) {
+        try {
+            new semver.Range(version);
+        }
+        catch (e) {
+            // The range string is invalid. OK to ignore the caught error
             throw new Error(getPacksStrInvalid(packStr, configFile));
         }
     }
+    if (packPath &&
+        (path.isAbsolute(packPath) ||
+            // Permit using "/" instead of "\" on Windows
+            // Use `x.split(y).join(z)` as a polyfill for `x.replaceAll(y, z)` since
+            // if we used a regex we'd need to escape the path separator on Windows
+            // which seems more awkward.
+            path.normalize(packPath).split(path.sep).join("/") !==
+                packPath.split(path.sep).join("/"))) {
+        throw new Error(getPacksStrInvalid(packStr, configFile));
+    }
+    if (!packPath && pathStart) {
+        // 0 length path
+        throw new Error(getPacksStrInvalid(packStr, configFile));
+    }
     return {
-        packName: nameWithVersion[0].trim(),
+        name: packName,
         version,
+        path: packPath,
     };
 }
+exports.parsePacksSpecification = parsePacksSpecification;
+function prettyPrintPack(pack) {
+    return `${pack.name}${pack.version ? `@${pack.version}` : ""}${pack.path ? `:${pack.path}` : ""}`;
+}
+exports.prettyPrintPack = prettyPrintPack;
+function validatePackSpecification(pack, configFile) {
+    return prettyPrintPack(parsePacksSpecification(pack, configFile));
+}
+exports.validatePackSpecification = validatePackSpecification;
 // exported for testing
-function parsePacks(rawPacksFromConfig, rawPacksInput, languages, configFile) {
-    const packsFromInput = parsePacksFromInput(rawPacksInput, languages);
-    const packsFomConfig = parsePacksFromConfig(rawPacksFromConfig, languages, configFile);
+function parsePacks(rawPacksFromConfig, rawPacksFromInput, packsInputCombines, languages, configFile, logger) {
+    const packsFomConfig = parsePacksFromConfig(rawPacksFromConfig, languages, configFile, logger);
+    const packsFromInput = parsePacksFromInput(rawPacksFromInput, languages, packsInputCombines);
     if (!packsFromInput) {
         return packsFomConfig;
     }
-    if (!shouldCombinePacks(rawPacksInput)) {
+    if (!packsInputCombines) {
+        if (!packsFromInput) {
+            throw new Error(getPacksInvalid(configFile));
+        }
         return packsFromInput;
     }
     return combinePacks(packsFromInput, packsFomConfig);
 }
 exports.parsePacks = parsePacks;
-function shouldCombinePacks(packsInput) {
-    return !!(packsInput === null || packsInput === void 0 ? void 0 : packsInput.trim().startsWith("+"));
+/**
+ * The convention in this action is that an input value that is prefixed with a '+' will
+ * be combined with the corresponding value in the config file.
+ *
+ * Without a '+', an input value will override the corresponding value in the config file.
+ *
+ * @param inputValue The input value to process.
+ * @returns true if the input value should replace the corresponding value in the config file, false if it should be appended.
+ */
+function shouldCombine(inputValue) {
+    return !!(inputValue === null || inputValue === void 0 ? void 0 : inputValue.trim().startsWith("+"));
 }
 function combinePacks(packs1, packs2) {
     const packs = {};
@@ -703,16 +883,16 @@ function dbLocationOrDefault(dbLocation, tempDir) {
  * This will parse the config from the user input if present, or generate
  * a default config. The parsed config is then stored to a known location.
  */
-async function initConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, toolCacheDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
+async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger) {
     var _a, _b, _c;
     let config;
     // If no config file was provided create an empty one
     if (!configFile) {
         logger.debug("No configuration file was provided");
-        config = await getDefaultConfig(languagesInput, queriesInput, packsInput, dbLocation, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, toolCacheDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger);
+        config = await getDefaultConfig(languagesInput, queriesInput, packsInput, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger);
     }
     else {
-        config = await loadConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, toolCacheDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger);
+        config = await loadConfig(languagesInput, queriesInput, packsInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, featureFlags, logger);
     }
     // The list of queries should not be empty for any language. If it is then
     // it is a user configuration error.
@@ -725,11 +905,29 @@ async function initConfig(languagesInput, queriesInput, packsInput, configFile,
                 "Please make sure that the default queries are enabled, or you are specifying queries to run.");
         }
     }
+    // When using the codescanning config in the CLI, pack downloads
+    // happen in the CLI during the `database init` command, so no need
+    // to download them here.
+    await (0, util_1.logCodeScanningConfigInCli)(codeQL, featureFlags, logger);
+    if (!(await (0, util_1.useCodeScanningConfigInCli)(codeQL, featureFlags))) {
+        const registries = parseRegistries(registriesInput);
+        await downloadPacks(codeQL, config.languages, config.packs, registries, apiDetails, config.tempDir, logger);
+    }
     // Save the config so we can easily access it again in the future
     await saveConfig(config, logger);
     return config;
 }
 exports.initConfig = initConfig;
+function parseRegistries(registriesInput) {
+    try {
+        return registriesInput
+            ? yaml.load(registriesInput)
+            : undefined;
+    }
+    catch (e) {
+        throw new Error("Invalid registries input. Must be a YAML string.");
+    }
+}
 function isLocal(configPath) {
     // If the path starts with ./, look locally
     if (configPath.indexOf("./") === 0) {
@@ -809,4 +1007,95 @@ async function getConfig(tempDir, logger) {
     return JSON.parse(configString);
 }
 exports.getConfig = getConfig;
+async function downloadPacks(codeQL, languages, packs, registries, apiDetails, tmpDir, logger) {
+    let qlconfigFile;
+    let registriesAuthTokens;
+    if (registries) {
+        if (!(await (0, util_1.codeQlVersionAbove)(codeQL, codeql_1.CODEQL_VERSION_GHES_PACK_DOWNLOAD))) {
+            throw new Error(`'registries' input is not supported on CodeQL versions less than ${codeql_1.CODEQL_VERSION_GHES_PACK_DOWNLOAD}.`);
+        }
+        // generate a qlconfig.yml file to hold the registry configs.
+        const qlconfig = createRegistriesBlock(registries);
+        qlconfigFile = path.join(tmpDir, "qlconfig.yml");
+        fs.writeFileSync(qlconfigFile, yaml.dump(qlconfig), "utf8");
+        registriesAuthTokens = registries
+            .map((registry) => `${registry.url}=${registry.token}`)
+            .join(",");
+    }
+    await wrapEnvironment({
+        GITHUB_TOKEN: apiDetails.auth,
+        CODEQL_REGISTRIES_AUTH: registriesAuthTokens,
+    }, async () => {
+        let numPacksDownloaded = 0;
+        logger.startGroup("Downloading packs");
+        for (const language of languages) {
+            const packsWithVersion = packs[language];
+            if (packsWithVersion === null || packsWithVersion === void 0 ? void 0 : packsWithVersion.length) {
+                logger.info(`Downloading custom packs for ${language}`);
+                const results = await codeQL.packDownload(packsWithVersion, qlconfigFile);
+                numPacksDownloaded += results.packs.length;
+                logger.info(`Downloaded: ${results.packs
+                    .map((r) => `${r.name}@${r.version || "latest"}`)
+                    .join(", ")}`);
+            }
+        }
+        if (numPacksDownloaded > 0) {
+            logger.info(`Downloaded ${numPacksDownloaded} ${packs === 1 ? "pack" : "packs"}`);
+        }
+        else {
+            logger.info("No packs to download");
+        }
+        logger.endGroup();
+    });
+}
+exports.downloadPacks = downloadPacks;
+function createRegistriesBlock(registries) {
+    if (!Array.isArray(registries) ||
+        registries.some((r) => !r.url || !r.packages)) {
+        throw new Error("Invalid 'registries' input. Must be an array of objects with 'url' and 'packages' properties.");
+    }
+    // be sure to remove the `token` field from the registry before writing it to disk.
+    const safeRegistries = registries.map((registry) => ({
+        // ensure the url ends with a slash to avoid a bug in the CLI 2.10.4
+        url: !(registry === null || registry === void 0 ? void 0 : registry.url.endsWith("/")) ? `${registry.url}/` : registry.url,
+        packages: registry.packages,
+    }));
+    const qlconfig = {
+        registries: safeRegistries,
+    };
+    return qlconfig;
+}
+/**
+ * Create a temporary environment based on the existing environment and overridden
+ * by the given environment variables that are passed in as arguments.
+ *
+ * Use this new environment in the context of the given operation. After completing
+ * the operation, restore the original environment.
+ *
+ * This function does not support un-setting environment variables.
+ *
+ * @param env
+ * @param operation
+ */
+async function wrapEnvironment(env, operation) {
+    // Remember the original env
+    const oldEnv = { ...process.env };
+    // Set the new env
+    for (const [key, value] of Object.entries(env)) {
+        // Ignore undefined keys
+        if (value !== undefined) {
+            process.env[key] = value;
+        }
+    }
+    try {
+        // Run the operation
+        await operation();
+    }
+    finally {
+        // Restore the old env
+        for (const [key, value] of Object.entries(oldEnv)) {
+            process.env[key] = value;
+        }
+    }
+}
 //# sourceMappingURL=config-utils.js.map

lib/config-utils.test.js

@@ -26,7 +26,7 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const github = __importStar(require("@actions/github"));
 const ava_1 = __importDefault(require("ava"));
-const semver_1 = require("semver");
+const yaml = __importStar(require("js-yaml"));
 const sinon = __importStar(require("sinon"));
 const api = __importStar(require("./api-client"));
 const codeql_1 = require("./codeql");
@@ -41,6 +41,8 @@ const sampleApiDetails = {
     auth: "token",
     externalRepoAuth: "token",
     url: "https://github.example.com",
+    apiURL: undefined,
+    registriesAuthTokens: undefined,
 };
 const gitHubVersion = { type: util.GitHubVariant.DOTCOM };
 // Returns the filepath of the newly-created file
@@ -88,9 +90,12 @@ function mockListLanguages(languages) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger);
-        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger);
+        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger));
     });
 });
 (0, ava_1.default)("loading config saves config", async (t) => {
@@ -107,26 +112,31 @@ function mockListLanguages(languages) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         // Sanity check the saved config file does not already exist
         t.false(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
         // Sanity check that getConfig returns undefined before we have called initConfig
         t.deepEqual(await configUtils.getConfig(tmpDir, logger), undefined);
-        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger);
+        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), logger);
         // The saved config file should now exist
         t.true(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
         // And that same newly-initialised config should now be returned by getConfig
         const config2 = await configUtils.getConfig(tmpDir, logger);
         t.not(config2, undefined);
         if (config2 !== undefined) {
-            t.deepEqual(config1, config2);
+            // removes properties assigned to undefined.
+            const expectedConfig = JSON.parse(JSON.stringify(config1));
+            t.deepEqual(expectedConfig, config2);
         }
     });
 });
 (0, ava_1.default)("load input outside of workspace", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, "../input", undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, "../input", undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -139,7 +149,7 @@ function mockListLanguages(languages) {
         // no filename given, just a repo
         const configFile = "octo-org/codeql-config@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -153,7 +163,7 @@ function mockListLanguages(languages) {
         const configFile = "input";
         t.false(fs.existsSync(path.join(tmpDir, configFile)));
         try {
-            await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -176,6 +186,9 @@ function mockListLanguages(languages) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         // Just create a generic config object with non-default values for all fields
         const inputFileContents = `
@@ -213,7 +226,6 @@ function mockListLanguages(languages) {
                 paths: ["c/d"],
             },
             tempDir: tmpDir,
-            toolCacheDir: tmpDir,
             codeQLCmd: codeQL.getPath(),
             gitHubVersion,
             dbLocation: path.resolve(tmpDir, "codeql_databases"),
@@ -221,10 +233,13 @@ function mockListLanguages(languages) {
             debugMode: false,
             debugArtifactName: "my-artifact",
             debugDatabaseName: "my-db",
+            augmentationProperties: configUtils.defaultAugmentationProperties,
+            trapCaches: {},
+            trapCacheDownloadTime: 0,
         };
         const languages = "javascript";
         const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, configFilePath, undefined, false, "my-artifact", "my-db", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "my-artifact", "my-db", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Should exactly equal the object we constructed earlier
         t.deepEqual(actualConfig, expectedConfig);
     });
@@ -250,6 +265,9 @@ function mockListLanguages(languages) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         // The important point of this config is that it doesn't specify
         // the disable-default-queries field.
@@ -260,7 +278,7 @@ function mockListLanguages(languages) {
         fs.mkdirSync(path.join(tmpDir, "foo"));
         const languages = "javascript";
         const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        await configUtils.initConfig(languages, undefined, undefined, configFilePath, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolve queries was called correctly
         t.deepEqual(resolveQueriesArgs.length, 1);
         t.deepEqual(resolveQueriesArgs[0].queries, [
@@ -301,20 +319,23 @@ function queriesToResolvedQueryForm(queries) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return queriesToResolvedQueryForm(queries);
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, configFilePath, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries
         // and once for `./foo` from the config file.
         t.deepEqual(resolveQueriesArgs.length, 2);
         t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.regex(resolveQueriesArgs[1].queries[0], /.*\/foo$/);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
         // Now check that the end result contains the default queries and the query from config
         t.deepEqual(config.queries["javascript"].builtin.length, 1);
         t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
-        t.regex(config.queries["javascript"].custom[0].queries[0], /.*\/foo$/);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
     });
 });
 (0, ava_1.default)("Queries from config file can be overridden in workflow file", async (t) => {
@@ -334,20 +355,23 @@ function queriesToResolvedQueryForm(queries) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return queriesToResolvedQueryForm(queries);
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, configFilePath, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries and once for `./override`,
         // but won't be called for './foo' from the config file.
         t.deepEqual(resolveQueriesArgs.length, 2);
         t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.regex(resolveQueriesArgs[1].queries[0], /.*\/override$/);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}override`));
         // Now check that the end result contains only the default queries and the override query
         t.deepEqual(config.queries["javascript"].builtin.length, 1);
         t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
-        t.regex(config.queries["javascript"].custom[0].queries[0], /.*\/override$/);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}override`));
     });
 });
 (0, ava_1.default)("Queries in workflow file can be used in tandem with the 'disable default queries' option", async (t) => {
@@ -366,19 +390,22 @@ function queriesToResolvedQueryForm(queries) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return queriesToResolvedQueryForm(queries);
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, configFilePath, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for `./workflow-query`,
         // but won't be called for the default one since that was disabled
         t.deepEqual(resolveQueriesArgs.length, 1);
         t.deepEqual(resolveQueriesArgs[0].queries.length, 1);
-        t.regex(resolveQueriesArgs[0].queries[0], /.*\/workflow-query$/);
+        t.true(resolveQueriesArgs[0].queries[0].endsWith(`${path.sep}workflow-query`));
         // Now check that the end result contains only the workflow query, and not the default one
         t.deepEqual(config.queries["javascript"].builtin.length, 0);
         t.deepEqual(config.queries["javascript"].custom.length, 1);
-        t.regex(config.queries["javascript"].custom[0].queries[0], /.*\/workflow-query$/);
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}workflow-query`));
     });
 });
 (0, ava_1.default)("Multiple queries can be specified in workflow file, no config file required", async (t) => {
@@ -392,23 +419,26 @@ function queriesToResolvedQueryForm(queries) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return queriesToResolvedQueryForm(queries);
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly:
         // It'll be called once for the default queries,
         // and then once for each of the two queries from the workflow
         t.deepEqual(resolveQueriesArgs.length, 3);
         t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
         t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
-        t.regex(resolveQueriesArgs[1].queries[0], /.*\/override1$/);
-        t.regex(resolveQueriesArgs[2].queries[0], /.*\/override2$/);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}override1`));
+        t.true(resolveQueriesArgs[2].queries[0].endsWith(`${path.sep}override2`));
         // Now check that the end result contains both the queries from the workflow, as well as the defaults
         t.deepEqual(config.queries["javascript"].builtin.length, 1);
         t.deepEqual(config.queries["javascript"].custom.length, 2);
-        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
-        t.regex(config.queries["javascript"].custom[0].queries[0], /.*\/override1$/);
-        t.regex(config.queries["javascript"].custom[1].queries[0], /.*\/override2$/);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}override1`));
+        t.true(config.queries["javascript"].custom[1].queries[0].endsWith(`${path.sep}override2`));
     });
 });
 (0, ava_1.default)("Queries in workflow file can be added to the set of queries without overriding config file", async (t) => {
@@ -431,27 +461,30 @@ function queriesToResolvedQueryForm(queries) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return queriesToResolvedQueryForm(queries);
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, configFilePath, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries,
         // once for each of additional1 and additional2,
         // and once for './foo' from the config file
         t.deepEqual(resolveQueriesArgs.length, 4);
         t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
-        t.regex(resolveQueriesArgs[1].queries[0], /.*\/additional1$/);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}additional1`));
         t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
-        t.regex(resolveQueriesArgs[2].queries[0], /.*\/additional2$/);
+        t.true(resolveQueriesArgs[2].queries[0].endsWith(`${path.sep}additional2`));
         t.deepEqual(resolveQueriesArgs[3].queries.length, 1);
-        t.regex(resolveQueriesArgs[3].queries[0], /.*\/foo$/);
+        t.true(resolveQueriesArgs[3].queries[0].endsWith(`${path.sep}foo`));
         // Now check that the end result contains all the queries
         t.deepEqual(config.queries["javascript"].builtin.length, 1);
         t.deepEqual(config.queries["javascript"].custom.length, 3);
-        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
-        t.regex(config.queries["javascript"].custom[0].queries[0], /.*\/additional1$/);
-        t.regex(config.queries["javascript"].custom[1].queries[0], /.*\/additional2$/);
-        t.regex(config.queries["javascript"].custom[2].queries[0], /.*\/foo$/);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}additional1`));
+        t.true(config.queries["javascript"].custom[1].queries[0].endsWith(`${path.sep}additional2`));
+        t.true(config.queries["javascript"].custom[2].queries[0].endsWith(`${path.sep}foo`));
     });
 });
 (0, ava_1.default)("Invalid queries in workflow file handled correctly", async (t) => {
@@ -470,9 +503,12 @@ function queriesToResolvedQueryForm(queries) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         try {
-            await configUtils.initConfig(languages, queries, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, queries, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             t.fail("initConfig did not throw error");
         }
         catch (err) {
@@ -494,6 +530,9 @@ function queriesToResolvedQueryForm(queries) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const inputFileContents = `
       name: my config
@@ -515,7 +554,7 @@ function queriesToResolvedQueryForm(queries) {
         fs.mkdirSync(path.join(tmpDir, "foo/bar/dev"), { recursive: true });
         const configFile = "octo-org/codeql-config/config.yaml@main";
         const languages = "javascript";
-        await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         t.assert(spyGetContents.called);
     });
 });
@@ -525,7 +564,7 @@ function queriesToResolvedQueryForm(queries) {
         mockGetContents(dummyResponse);
         const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, repoReference, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -541,7 +580,7 @@ function queriesToResolvedQueryForm(queries) {
         mockGetContents(dummyResponse);
         const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, repoReference, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -556,9 +595,12 @@ function queriesToResolvedQueryForm(queries) {
             async resolveLanguages() {
                 return {};
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -570,7 +612,7 @@ function queriesToResolvedQueryForm(queries) {
     return await util.withTmpDir(async (tmpDir) => {
         const languages = "rubbish,english";
         try {
-            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -588,6 +630,9 @@ function queriesToResolvedQueryForm(queries) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const inputFileContents = `
       name: my config
@@ -598,14 +643,9 @@ function queriesToResolvedQueryForm(queries) {
         const configFile = path.join(tmpDir, "codeql-config.yaml");
         fs.writeFileSync(configFile, inputFileContents);
         const languages = "javascript";
-        const { packs } = await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const { packs } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         t.deepEqual(packs, {
-            [languages_1.Language.javascript]: [
-                {
-                    packName: "a/b",
-                    version: (0, semver_1.clean)("1.2.3"),
-                },
-            ],
+            [languages_1.Language.javascript]: ["a/b@1.2.3"],
         });
     });
 });
@@ -621,6 +661,9 @@ function queriesToResolvedQueryForm(queries) {
                     multipleDeclaredLanguages: {},
                 };
             },
+            async packDownload() {
+                return { packs: [] };
+            },
         });
         const inputFileContents = `
       name: my config
@@ -637,20 +680,10 @@ function queriesToResolvedQueryForm(queries) {
         fs.writeFileSync(configFile, inputFileContents);
         fs.mkdirSync(path.join(tmpDir, "foo"));
         const languages = "javascript,python,cpp";
-        const { packs, queries } = await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example" }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+        const { packs, queries } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
         t.deepEqual(packs, {
-            [languages_1.Language.javascript]: [
-                {
-                    packName: "a/b",
-                    version: (0, semver_1.clean)("1.2.3"),
-                },
-            ],
-            [languages_1.Language.python]: [
-                {
-                    packName: "c/d",
-                    version: (0, semver_1.clean)("1.2.3"),
-                },
-            ],
+            [languages_1.Language.javascript]: ["a/b@1.2.3"],
+            [languages_1.Language.python]: ["c/d@1.2.3"],
         });
         t.deepEqual(queries, {
             cpp: {
@@ -684,13 +717,16 @@ function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGen
                         multipleDeclaredLanguages: {},
                     };
                 },
+                async packDownload() {
+                    return { packs: [] };
+                },
             });
             const languages = "javascript";
             const configFile = "input";
             const inputFile = path.join(tmpDir, configFile);
             fs.writeFileSync(inputFile, inputFileContents, "utf8");
             try {
-                await configUtils.initConfig(languages, undefined, undefined, configFile, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
+                await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)([]), (0, logging_1.getRunnerLogger)(true));
                 throw new Error("initConfig did not throw error");
             }
             catch (err) {
@@ -709,7 +745,7 @@ doInvalidInputTest("paths invalid type", `paths: 17`, configUtils.getPathsInvali
 doInvalidInputTest("queries uses invalid type", `
   queries:
   - uses:
-      - hello: world`, configUtils.getQueryUsesInvalid);
+      - hello: world`, configUtils.getQueriesMissingUses);
 function doInvalidQueryUsesTest(input, expectedErrorMessageGenerator) {
     // Invalid contents of a "queries.uses" field.
     // Should fail with the expected error message
@@ -764,14 +800,14 @@ const invalidPaths = ["a/***/b", "a/**b", "a/b**", "**"];
  * Test macro for ensuring the packs block is valid
  */
 const parsePacksMacro = ava_1.default.macro({
-    exec: (t, packsByLanguage, languages, expected) => t.deepEqual(configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b"), expected),
+    exec: (t, packsByLanguage, languages, expected) => t.deepEqual(configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b", mockLogger), expected),
     title: (providedTitle = "") => `Parse Packs: ${providedTitle}`,
 });
 /**
  * Test macro for testing when the packs block is invalid
  */
 const parsePacksErrorMacro = ava_1.default.macro({
-    exec: (t, packsByLanguage, languages, expected) => t.throws(() => configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b"), {
+    exec: (t, packsByLanguage, languages, expected) => t.throws(() => configUtils.parsePacksFromConfig(packsByLanguage, languages, "/a/b", {}), {
         message: expected,
     }),
     title: (providedTitle = "") => `Parse Packs Error: ${providedTitle}`,
@@ -785,92 +821,152 @@ const invalidPackNameMacro = ava_1.default.macro({
 });
 (0, ava_1.default)("no packs", parsePacksMacro, {}, [], {});
 (0, ava_1.default)("two packs", parsePacksMacro, ["a/b", "c/d@1.2.3"], [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: (0, semver_1.clean)("1.2.3") },
-    ],
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
 (0, ava_1.default)("two packs with spaces", parsePacksMacro, [" a/b ", " c/d@1.2.3 "], [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: (0, semver_1.clean)("1.2.3") },
-    ],
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
 (0, ava_1.default)("two packs with language", parsePacksMacro, {
     [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
     [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
 }, [languages_1.Language.cpp, languages_1.Language.java, languages_1.Language.csharp], {
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
+    [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
+});
+(0, ava_1.default)("two packs with unused language in config", parsePacksMacro, {
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
+    [languages_1.Language.java]: ["d/e", "f/g@1.2.3"],
+}, [languages_1.Language.cpp, languages_1.Language.csharp], {
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
+});
+(0, ava_1.default)("packs with other valid names", parsePacksMacro, [
+    // ranges are ok
+    "c/d@1.0",
+    "c/d@~1.0.0",
+    "c/d@~1.0.0:a/b",
+    "c/d@~1.0.0+abc:a/b",
+    "c/d@~1.0.0-abc:a/b",
+    "c/d:a/b",
+    // whitespace is removed
+    " c/d      @     ~1.0.0    :    b.qls   ",
+    // and it is retained within a path
+    " c/d      @     ~1.0.0    :    b/a path with/spaces.qls   ",
+    // this is valid. the path is '@'. It will probably fail when passed to the CLI
+    "c/d@1.2.3:@",
+    // this is valid, too. It will fail if it doesn't match a path
+    // (globbing is not done)
+    "c/d@1.2.3:+*)_(",
+], [languages_1.Language.cpp], {
     [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: (0, semver_1.clean)("1.2.3") },
-    ],
-    [languages_1.Language.java]: [
-        { packName: "d/e", version: undefined },
-        { packName: "f/g", version: (0, semver_1.clean)("1.2.3") },
+        "c/d@1.0",
+        "c/d@~1.0.0",
+        "c/d@~1.0.0:a/b",
+        "c/d@~1.0.0+abc:a/b",
+        "c/d@~1.0.0-abc:a/b",
+        "c/d:a/b",
+        "c/d@~1.0.0:b.qls",
+        "c/d@~1.0.0:b/a path with/spaces.qls",
+        "c/d@1.2.3:@",
+        "c/d@1.2.3:+*)_(",
     ],
 });
 (0, ava_1.default)("no language", parsePacksErrorMacro, ["a/b@1.2.3"], [languages_1.Language.java, languages_1.Language.python], /The configuration file "\/a\/b" is invalid: property "packs" must split packages by language/);
-(0, ava_1.default)("invalid language", parsePacksErrorMacro, { [languages_1.Language.java]: ["c/d"] }, [languages_1.Language.cpp], /The configuration file "\/a\/b" is invalid: property "packs" has "java", but it is not one of the languages to analyze/);
 (0, ava_1.default)("not an array", parsePacksErrorMacro, { [languages_1.Language.cpp]: "c/d" }, [languages_1.Language.cpp], /The configuration file "\/a\/b" is invalid: property "packs" must be an array of non-empty strings/);
 (0, ava_1.default)(invalidPackNameMacro, "c"); // all packs require at least a scope and a name
 (0, ava_1.default)(invalidPackNameMacro, "c-/d");
 (0, ava_1.default)(invalidPackNameMacro, "-c/d");
 (0, ava_1.default)(invalidPackNameMacro, "c/d_d");
-(0, ava_1.default)(invalidPackNameMacro, "c/d@x");
+(0, ava_1.default)(invalidPackNameMacro, "c/d@@");
+(0, ava_1.default)(invalidPackNameMacro, "c/d@1.0.0:");
+(0, ava_1.default)(invalidPackNameMacro, "c/d:");
+(0, ava_1.default)(invalidPackNameMacro, "c/d:/a");
+(0, ava_1.default)(invalidPackNameMacro, "@1.0.0:a");
+(0, ava_1.default)(invalidPackNameMacro, "c/d@../a");
+(0, ava_1.default)(invalidPackNameMacro, "c/d@b/../a");
+(0, ava_1.default)(invalidPackNameMacro, "c/d:z@1");
+/**
+ * Test macro for pretty printing pack specs
+ */
+const packSpecPrettyPrintingMacro = ava_1.default.macro({
+    exec: (t, packStr, packObj) => {
+        const parsed = configUtils.parsePacksSpecification(packStr);
+        t.deepEqual(parsed, packObj, "parsed pack spec is correct");
+        const stringified = configUtils.prettyPrintPack(packObj);
+        t.deepEqual(stringified, packStr.trim(), "pretty-printed pack spec is correct");
+        t.deepEqual(configUtils.validatePackSpecification(packStr), packStr.trim(), "pack spec is valid");
+    },
+    title: (_providedTitle, packStr, 
+    // eslint-disable-next-line @typescript-eslint/no-unused-vars
+    _packObj) => `Prettyprint pack spec: '${packStr}'`,
+});
+(0, ava_1.default)(packSpecPrettyPrintingMacro, "a/b", {
+    name: "a/b",
+    version: undefined,
+    path: undefined,
+});
+(0, ava_1.default)(packSpecPrettyPrintingMacro, "a/b@~1.2.3", {
+    name: "a/b",
+    version: "~1.2.3",
+    path: undefined,
+});
+(0, ava_1.default)(packSpecPrettyPrintingMacro, "a/b@~1.2.3:abc/def", {
+    name: "a/b",
+    version: "~1.2.3",
+    path: "abc/def",
+});
+(0, ava_1.default)(packSpecPrettyPrintingMacro, "a/b:abc/def", {
+    name: "a/b",
+    version: undefined,
+    path: "abc/def",
+});
+(0, ava_1.default)(packSpecPrettyPrintingMacro, "    a/b:abc/def    ", {
+    name: "a/b",
+    version: undefined,
+    path: "abc/def",
+});
 /**
  * Test macro for testing the packs block and the packs input
  */
 function parseInputAndConfigMacro(t, packsFromConfig, packsFromInput, languages, expected) {
-    t.deepEqual(configUtils.parsePacks(packsFromConfig, packsFromInput, languages, "/a/b"), expected);
+    t.deepEqual(configUtils.parsePacks(packsFromConfig, packsFromInput, !!(packsFromInput === null || packsFromInput === void 0 ? void 0 : packsFromInput.trim().startsWith("+")), // coerce to boolean
+    languages, "/a/b", mockLogger), expected);
 }
 parseInputAndConfigMacro.title = (providedTitle) => `Parse Packs input and config: ${providedTitle}`;
-function parseInputAndConfigErrorMacro(t, packsFromConfig, packsFromInput, languages, expected) {
+const mockLogger = {
+    info: (message) => {
+        console.log(message);
+    },
+};
+function parseInputAndConfigErrorMacro(t, packsFromConfig, packsFromInput, languages, packsFromInputOverride, expected) {
     t.throws(() => {
-        configUtils.parsePacks(packsFromConfig, packsFromInput, languages, "/a/b");
+        configUtils.parsePacks(packsFromConfig, packsFromInput, packsFromInputOverride, languages, "/a/b", mockLogger);
     }, {
         message: expected,
     });
 }
 parseInputAndConfigErrorMacro.title = (providedTitle) => `Parse Packs input and config Error: ${providedTitle}`;
 (0, ava_1.default)("input only", parseInputAndConfigMacro, {}, " c/d ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [{ packName: "c/d", version: undefined }],
+    [languages_1.Language.cpp]: ["c/d"],
 });
 (0, ava_1.default)("input only with multiple", parseInputAndConfigMacro, {}, "a/b , c/d@1.2.3", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: "1.2.3" },
-    ],
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
 (0, ava_1.default)("input only with +", parseInputAndConfigMacro, {}, "  +  a/b , c/d@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: "1.2.3" },
-    ],
+    [languages_1.Language.cpp]: ["a/b", "c/d@1.2.3"],
 });
 (0, ava_1.default)("config only", parseInputAndConfigMacro, ["a/b", "c/d"], "  ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: undefined },
-    ],
+    [languages_1.Language.cpp]: ["a/b", "c/d"],
 });
 (0, ava_1.default)("input overrides", parseInputAndConfigMacro, ["a/b", "c/d"], " e/f, g/h@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "e/f", version: undefined },
-        { packName: "g/h", version: "1.2.3" },
-    ],
+    [languages_1.Language.cpp]: ["e/f", "g/h@1.2.3"],
 });
 (0, ava_1.default)("input and config", parseInputAndConfigMacro, ["a/b", "c/d"], " +e/f, g/h@1.2.3 ", [languages_1.Language.cpp], {
-    [languages_1.Language.cpp]: [
-        { packName: "e/f", version: undefined },
-        { packName: "g/h", version: "1.2.3" },
-        { packName: "a/b", version: undefined },
-        { packName: "c/d", version: undefined },
-    ],
+    [languages_1.Language.cpp]: ["e/f", "g/h@1.2.3", "a/b", "c/d"],
 });
-(0, ava_1.default)("input with no language", parseInputAndConfigErrorMacro, {}, "c/d", [], /No languages specified/);
-(0, ava_1.default)("input with two languages", parseInputAndConfigErrorMacro, {}, "c/d", [languages_1.Language.cpp, languages_1.Language.csharp], /multi-language analysis/);
-(0, ava_1.default)("input with + only", parseInputAndConfigErrorMacro, {}, " + ", [languages_1.Language.cpp], /remove the '\+'/);
-(0, ava_1.default)("input with invalid pack name", parseInputAndConfigErrorMacro, {}, " xxx", [languages_1.Language.cpp], /"xxx" is not a valid pack/);
+(0, ava_1.default)("input with no language", parseInputAndConfigErrorMacro, {}, "c/d", [], false, /No languages specified/);
+(0, ava_1.default)("input with two languages", parseInputAndConfigErrorMacro, {}, "c/d", [languages_1.Language.cpp, languages_1.Language.csharp], false, /multi-language analysis/);
+(0, ava_1.default)("input with + only", parseInputAndConfigErrorMacro, {}, " + ", [languages_1.Language.cpp], true, /remove the '\+'/);
+(0, ava_1.default)("input with invalid pack name", parseInputAndConfigErrorMacro, {}, " xxx", [languages_1.Language.cpp], false, /"xxx" is not a valid pack/);
 const mlPoweredQueriesMacro = ava_1.default.macro({
     exec: async (t, codeQLVersion, isMlPoweredQueriesFlagEnabled, packsInput, queriesInput, expectedVersionString) => {
         return await util.withTmpDir(async (tmpDir) => {
@@ -887,17 +983,17 @@ const mlPoweredQueriesMacro = ava_1.default.macro({
                         multipleDeclaredLanguages: {},
                     };
                 },
+                async packDownload() {
+                    return { packs: [] };
+                },
             });
-            const { packs } = await configUtils.initConfig("javascript", queriesInput, packsInput, undefined, undefined, false, "", "", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)(isMlPoweredQueriesFlagEnabled
+            const { packs } = await configUtils.initConfig("javascript", queriesInput, packsInput, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, feature_flags_1.createFeatureFlags)(isMlPoweredQueriesFlagEnabled
                 ? [feature_flags_1.FeatureFlag.MlPoweredQueriesEnabled]
                 : []), (0, logging_1.getRunnerLogger)(true));
             if (expectedVersionString !== undefined) {
                 t.deepEqual(packs, {
                     [languages_1.Language.javascript]: [
-                        {
-                            packName: "codeql/javascript-experimental-atm-queries",
-                            version: expectedVersionString,
-                        },
+                        `codeql/javascript-experimental-atm-queries@${expectedVersionString}`,
                     ],
                 });
             }
@@ -910,11 +1006,232 @@ const mlPoweredQueriesMacro = ava_1.default.macro({
         ? `${expectedVersionString} are`
         : "aren't"} loaded for packs: ${packsInput}, queries: ${queriesInput} using CLI v${codeQLVersion} when feature flag is ${isMlPoweredQueriesFlagEnabled ? "enabled" : "disabled"}`,
 });
-// macro, isMlPoweredQueriesFlagEnabled, packsInput, queriesInput, versionString
+// macro, codeQLVersion, isMlPoweredQueriesFlagEnabled, packsInput, queriesInput, expectedVersionString
+// Test that ML-powered queries aren't run on v2.7.4 of the CLI.
 (0, ava_1.default)(mlPoweredQueriesMacro, "2.7.4", true, undefined, "security-extended", undefined);
+// Test that ML-powered queries aren't run when the feature flag is off.
 (0, ava_1.default)(mlPoweredQueriesMacro, "2.7.5", false, undefined, "security-extended", undefined);
+// Test that the ~0.1.0 version of ML-powered queries is run on v2.8.3 of the CLI.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.8.3", true, undefined, "security-extended", process.platform === "win32" ? undefined : "~0.1.0");
+// Test that ML-powered queries aren't run when the user hasn't specified that we should run the
+// `security-extended` or `security-and-quality` query suite.
 (0, ava_1.default)(mlPoweredQueriesMacro, "2.7.5", true, undefined, undefined, undefined);
-(0, ava_1.default)(mlPoweredQueriesMacro, "2.7.5", true, undefined, "security-extended", "~0.1.0");
-(0, ava_1.default)(mlPoweredQueriesMacro, "2.7.5", true, undefined, "security-and-quality", "~0.1.0");
-(0, ava_1.default)(mlPoweredQueriesMacro, "2.7.5", true, "codeql/javascript-experimental-atm-queries@0.0.1", "security-and-quality", "0.0.1");
+// Test that ML-powered queries are run on non-Windows platforms running `security-extended` on
+// versions of the CodeQL CLI prior to 2.9.0.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.8.5", true, undefined, "security-extended", process.platform === "win32" ? undefined : "~0.2.0");
+// Test that ML-powered queries are run on non-Windows platforms running `security-and-quality` on
+// versions of the CodeQL CLI prior to 2.9.0.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.8.5", true, undefined, "security-and-quality", process.platform === "win32" ? undefined : "~0.2.0");
+// Test that ML-powered queries are run on all platforms running `security-extended` on CodeQL CLI
+// 2.9.0+.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.9.0", true, undefined, "security-extended", "~0.2.0");
+// Test that ML-powered queries are run on all platforms running `security-and-quality` on CodeQL
+// CLI 2.9.0+.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.9.0", true, undefined, "security-and-quality", "~0.2.0");
+// Test that we don't inject an ML-powered query pack if the user has already specified one.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.9.0", true, "codeql/javascript-experimental-atm-queries@0.0.1", "security-and-quality", "0.0.1");
+// Test that ML-powered queries are run on all platforms running `security-extended` on CodeQL
+// CLI 2.9.3+.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.9.3", true, undefined, "security-extended", "~0.3.0");
+// Test that ML-powered queries are run on all platforms running `security-and-quality` on CodeQL
+// CLI 2.9.3+.
+(0, ava_1.default)(mlPoweredQueriesMacro, "2.9.3", true, undefined, "security-and-quality", "~0.3.0");
+const calculateAugmentationMacro = ava_1.default.macro({
+    exec: async (t, _title, rawPacksInput, rawQueriesInput, languages, expectedAugmentationProperties) => {
+        const actualAugmentationProperties = configUtils.calculateAugmentation(rawPacksInput, rawQueriesInput, languages);
+        t.deepEqual(actualAugmentationProperties, expectedAugmentationProperties);
+    },
+    title: (_, title) => `Calculate Augmentation: ${title}`,
+});
+(0, ava_1.default)(calculateAugmentationMacro, "All empty", undefined, undefined, [languages_1.Language.javascript], {
+    queriesInputCombines: false,
+    queriesInput: undefined,
+    packsInputCombines: false,
+    packsInput: undefined,
+    injectedMlQueries: false,
+});
+(0, ava_1.default)(calculateAugmentationMacro, "With queries", undefined, " a, b , c, d", [languages_1.Language.javascript], {
+    queriesInputCombines: false,
+    queriesInput: [{ uses: "a" }, { uses: "b" }, { uses: "c" }, { uses: "d" }],
+    packsInputCombines: false,
+    packsInput: undefined,
+    injectedMlQueries: false,
+});
+(0, ava_1.default)(calculateAugmentationMacro, "With queries combining", undefined, "   +   a, b , c, d ", [languages_1.Language.javascript], {
+    queriesInputCombines: true,
+    queriesInput: [{ uses: "a" }, { uses: "b" }, { uses: "c" }, { uses: "d" }],
+    packsInputCombines: false,
+    packsInput: undefined,
+    injectedMlQueries: false,
+});
+(0, ava_1.default)(calculateAugmentationMacro, "With packs", "   codeql/a , codeql/b   , codeql/c  , codeql/d  ", undefined, [languages_1.Language.javascript], {
+    queriesInputCombines: false,
+    queriesInput: undefined,
+    packsInputCombines: false,
+    packsInput: ["codeql/a", "codeql/b", "codeql/c", "codeql/d"],
+    injectedMlQueries: false,
+});
+(0, ava_1.default)(calculateAugmentationMacro, "With packs combining", "   +   codeql/a, codeql/b, codeql/c, codeql/d", undefined, [languages_1.Language.javascript], {
+    queriesInputCombines: false,
+    queriesInput: undefined,
+    packsInputCombines: true,
+    packsInput: ["codeql/a", "codeql/b", "codeql/c", "codeql/d"],
+    injectedMlQueries: false,
+});
+const calculateAugmentationErrorMacro = ava_1.default.macro({
+    exec: async (t, _title, rawPacksInput, rawQueriesInput, languages, expectedError) => {
+        t.throws(() => configUtils.calculateAugmentation(rawPacksInput, rawQueriesInput, languages), { message: expectedError });
+    },
+    title: (_, title) => `Calculate Augmentation Error: ${title}`,
+});
+(0, ava_1.default)(calculateAugmentationErrorMacro, "Plus (+) with nothing else (queries)", undefined, "   +   ", [languages_1.Language.javascript], /The workflow property "queries" is invalid/);
+(0, ava_1.default)(calculateAugmentationErrorMacro, "Plus (+) with nothing else (packs)", "   +   ", undefined, [languages_1.Language.javascript], /The workflow property "packs" is invalid/);
+(0, ava_1.default)(calculateAugmentationErrorMacro, "Packs input with multiple languages", "   +  a/b, c/d ", undefined, [languages_1.Language.javascript, languages_1.Language.java], /Cannot specify a 'packs' input in a multi-language analysis/);
+(0, ava_1.default)(calculateAugmentationErrorMacro, "Packs input with no languages", "   +  a/b, c/d ", undefined, [], /No languages specified/);
+(0, ava_1.default)(calculateAugmentationErrorMacro, "Invalid packs", " a-pack-without-a-scope ", undefined, [languages_1.Language.javascript], /"a-pack-without-a-scope" is not a valid pack/);
+(0, ava_1.default)("downloadPacks-no-registries", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const packDownloadStub = sinon.stub();
+        packDownloadStub.callsFake((packs) => ({
+            packs,
+        }));
+        const codeQL = (0, codeql_1.setCodeQL)({
+            packDownload: packDownloadStub,
+        });
+        const logger = (0, logging_1.getRunnerLogger)(true);
+        // packs are supplied for go, java, and python
+        // analyzed languages are java, javascript, and python
+        await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {
+            java: ["a", "b"],
+            go: ["c", "d"],
+            python: ["e", "f"],
+        }, undefined, // registries
+        sampleApiDetails, tmpDir, logger);
+        // Expecting packs to be downloaded once for java and once for python
+        t.deepEqual(packDownloadStub.callCount, 2);
+        // no config file was created, so pass `undefined` as the config file path
+        t.deepEqual(packDownloadStub.firstCall.args, [["a", "b"], undefined]);
+        t.deepEqual(packDownloadStub.secondCall.args, [["e", "f"], undefined]);
+    });
+});
+(0, ava_1.default)("downloadPacks-with-registries", async (t) => {
+    // same thing, but this time include a registries block and
+    // associated env vars
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env.GITHUB_TOKEN = "not-a-token";
+        process.env.CODEQL_REGISTRIES_AUTH = "not-a-registries-auth";
+        const logger = (0, logging_1.getRunnerLogger)(true);
+        const registries = [
+            {
+                // no slash
+                url: "http://ghcr.io",
+                packages: ["codeql/*", "dsp-testing/*"],
+                token: "not-a-token",
+            },
+            {
+                // with slash
+                url: "https://containers.GHEHOSTNAME1/v2/",
+                packages: "semmle/*",
+                token: "still-not-a-token",
+            },
+        ];
+        // append a slash to the first url
+        const expectedRegistries = registries.map((r, i) => ({
+            packages: r.packages,
+            url: i === 0 ? `${r.url}/` : r.url,
+        }));
+        const expectedConfigFile = path.join(tmpDir, "qlconfig.yml");
+        const packDownloadStub = sinon.stub();
+        packDownloadStub.callsFake((packs, configFile) => {
+            t.deepEqual(configFile, expectedConfigFile);
+            // verify the env vars were set correctly
+            t.deepEqual(process.env.GITHUB_TOKEN, sampleApiDetails.auth);
+            t.deepEqual(process.env.CODEQL_REGISTRIES_AUTH, "http://ghcr.io=not-a-token,https://containers.GHEHOSTNAME1/v2/=still-not-a-token");
+            // verify the config file contents were set correctly
+            const config = yaml.load(fs.readFileSync(configFile, "utf8"));
+            t.deepEqual(config.registries, expectedRegistries);
+            return {
+                packs,
+            };
+        });
+        const codeQL = (0, codeql_1.setCodeQL)({
+            packDownload: packDownloadStub,
+            getVersion: () => Promise.resolve("2.10.5"),
+        });
+        // packs are supplied for go, java, and python
+        // analyzed languages are java, javascript, and python
+        await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {
+            java: ["a", "b"],
+            go: ["c", "d"],
+            python: ["e", "f"],
+        }, registries, sampleApiDetails, tmpDir, logger);
+        // Same packs are downloaded as in previous test
+        t.deepEqual(packDownloadStub.callCount, 2);
+        t.deepEqual(packDownloadStub.firstCall.args, [
+            ["a", "b"],
+            expectedConfigFile,
+        ]);
+        t.deepEqual(packDownloadStub.secondCall.args, [
+            ["e", "f"],
+            expectedConfigFile,
+        ]);
+        // Verify that the env vars were unset.
+        t.deepEqual(process.env.GITHUB_TOKEN, "not-a-token");
+        t.deepEqual(process.env.CODEQL_REGISTRIES_AUTH, "not-a-registries-auth");
+    });
+});
+(0, ava_1.default)("downloadPacks-with-registries fails on 2.10.3", async (t) => {
+    // same thing, but this time include a registries block and
+    // associated env vars
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env.GITHUB_TOKEN = "not-a-token";
+        process.env.CODEQL_REGISTRIES_AUTH = "not-a-registries-auth";
+        const logger = (0, logging_1.getRunnerLogger)(true);
+        const registries = [
+            {
+                url: "http://ghcr.io",
+                packages: ["codeql/*", "dsp-testing/*"],
+                token: "not-a-token",
+            },
+            {
+                url: "https://containers.GHEHOSTNAME1/v2/",
+                packages: "semmle/*",
+                token: "still-not-a-token",
+            },
+        ];
+        const codeQL = (0, codeql_1.setCodeQL)({
+            getVersion: () => Promise.resolve("2.10.3"),
+        });
+        await t.throwsAsync(async () => {
+            return await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {}, registries, sampleApiDetails, tmpDir, logger);
+        }, { instanceOf: Error }, "'registries' input is not supported on CodeQL versions less than 2.10.4.");
+    });
+});
+(0, ava_1.default)("downloadPacks-with-registries fails with invalid registries block", async (t) => {
+    // same thing, but this time include a registries block and
+    // associated env vars
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env.GITHUB_TOKEN = "not-a-token";
+        process.env.CODEQL_REGISTRIES_AUTH = "not-a-registries-auth";
+        const logger = (0, logging_1.getRunnerLogger)(true);
+        const registries = [
+            {
+                // missing url property
+                packages: ["codeql/*", "dsp-testing/*"],
+                token: "not-a-token",
+            },
+            {
+                url: "https://containers.GHEHOSTNAME1/v2/",
+                packages: "semmle/*",
+                token: "still-not-a-token",
+            },
+        ];
+        const codeQL = (0, codeql_1.setCodeQL)({
+            getVersion: () => Promise.resolve("2.10.4"),
+        });
+        await t.throwsAsync(async () => {
+            return await configUtils.downloadPacks(codeQL, [languages_1.Language.javascript, languages_1.Language.java, languages_1.Language.python], {}, registries, sampleApiDetails, tmpDir, logger);
+        }, { instanceOf: Error }, "Invalid 'registries' input. Must be an array of objects with 'url' and 'packages' properties.");
+    });
+});
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