Merge pull request #3199 from github/mergeback/v4.30.8-to-main-f443b600

Mergeback v4.30.8 refs/heads/releases/v4 into main

.eslintignore

@@ -1,5 +0,0 @@
-**/webpack.config.js
-lib/**
-runner/dist/**
-src/testdata/**
-tests/**

.eslintrc.json

@@ -1,59 +0,0 @@
-
-{
-    "parser": "@typescript-eslint/parser",
-    "parserOptions": {
-        "project": "./tsconfig.json"
-    },
-    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
-    "extends": [
-        "eslint:recommended",
-        "plugin:@typescript-eslint/recommended",
-        "plugin:@typescript-eslint/recommended-requiring-type-checking",
-        "plugin:github/recommended",
-        "plugin:github/typescript",
-        "plugin:import/typescript"
-    ],
-    "rules": {
-        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
-        "i18n-text/no-en": "off",
-        "import/extensions": "error",
-        "import/no-amd": "error",
-        "import/no-commonjs": "error",
-        "import/no-dynamic-require": "error",
-        // Disable the rule that checks that devDependencies aren't imported since we use a single
-        // linting configuration file for both source and test code.
-        "import/no-extraneous-dependencies": ["error", {"devDependencies": true}],
-        "import/no-namespace": "off",
-        "import/no-unresolved": "error",
-        "import/no-webpack-loader-syntax": "error",
-        "import/order": ["error", {
-            "alphabetize": {"order": "asc"},
-            "newlines-between": "always"
-        }],
-        "no-async-foreach/no-async-foreach": "error",
-        "no-console": "off",
-        "no-sequences": "error",
-        "no-shadow": "off",
-        "@typescript-eslint/no-shadow": ["error"],
-        "one-var": ["error", "never"]
-    },
-    "overrides": [{
-        // "temporarily downgraded during transition to eslint
-        "files": "**",
-        "rules": {
-            "@typescript-eslint/ban-types": "off",
-            "@typescript-eslint/explicit-module-boundary-types": "off",
-            "@typescript-eslint/no-explicit-any": "off",
-            "@typescript-eslint/no-unsafe-assignment": "off",
-            "@typescript-eslint/no-unsafe-call": "off",
-            "@typescript-eslint/no-unsafe-member-access": "off",
-            "@typescript-eslint/no-unsafe-return": "off",
-            "@typescript-eslint/no-var-requires": "off",
-            "@typescript-eslint/prefer-regexp-exec": "off",
-            "@typescript-eslint/require-await": "off",
-            "@typescript-eslint/restrict-template-expressions": "off",
-            "func-style": "off",
-            "sort-imports": "off"
-        }
-    }]
-}

.git-blame-ignore-revs

@@ -0,0 +1,3 @@
+# .git-blame-ignore-revs
+# Added trailing commas to adhere to new eslint rules
+b16296be30e150034524d6dd0b0418fc6b184267

.github/actions/check-codescanning-config/action.yml

@@ -0,0 +1,72 @@
+name: Check Code-Scanning Config
+description: |
+    Checks the code scanning configuration file generated by the
+    action to ensure it contains the expected contents
+inputs:
+  languages:
+    required: false
+    description: The languages field passed to the init action.
+
+  packs:
+    required: false
+    description: The packs field passed to the init action.
+
+  queries:
+    required: false
+    description: The queries field passed to the init action.
+
+  config-file-test:
+    required: false
+    description: |
+      The location of the config file to use. If empty,
+      then no config file is used.
+
+  expected-config-file-contents:
+    required: true
+    description: |
+      A JSON string containing the exact contents of the config file.
+
+  tools:
+    required: true
+    description: |
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
+
+runs:
+  using: composite
+  steps:
+    - uses: ./../action/init
+      with:
+        languages: ${{ inputs.languages }}
+        config-file: ${{ inputs.config-file-test }}
+        queries: ${{ inputs.queries }}
+        packs: ${{ inputs.packs }}
+        tools: ${{ inputs.tools }}
+        db-location: ${{ runner.temp }}/codescanning-config-cli-test
+      env:
+        CODEQL_ACTION_TEST_MODE: 'true'
+
+    - name: Install dependencies
+      shell: bash
+      run: npm install --location=global ts-node js-yaml
+
+    - name: Check config
+      working-directory: ${{ github.action_path }}
+      shell: bash
+      env:
+        EXPECTED_CONFIG_FILE_CONTENTS: '${{ inputs.expected-config-file-contents }}'
+      run: ts-node ./index.ts "$RUNNER_TEMP/user-config.yaml" "$EXPECTED_CONFIG_FILE_CONTENTS"
+    - name: Clean up
+      shell: bash
+      if: always()
+      run: |
+        rm -rf $RUNNER_TEMP/codescanning-config-cli-test
+        rm -rf $RUNNER_TEMP/user-config.yaml

.github/actions/check-codescanning-config/index.ts

@@ -0,0 +1,49 @@
+
+import * as core from '@actions/core'
+import * as yaml from 'js-yaml'
+import * as fs from 'fs'
+import * as assert from 'assert'
+
+const actualConfig = loadActualConfig()
+
+function sortConfigArrays(config) {
+  for (const key of Object.keys(config)) {
+    const value = config[key];
+    if (key === 'queries' && Array.isArray(value)) {
+      config[key] = value.sort();
+    }
+  }
+  return config;
+}
+
+const rawExpectedConfig = process.argv[3].trim()
+if (!rawExpectedConfig) {
+  core.setFailed('No expected configuration provided')
+} else {
+  core.startGroup('Expected generated user config')
+  core.info(yaml.dump(JSON.parse(rawExpectedConfig)))
+  core.endGroup()
+}
+
+const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
+
+assert.deepStrictEqual(
+  sortConfigArrays(actualConfig),
+  sortConfigArrays(expectedConfig),
+  'Expected configuration does not match actual configuration'
+);
+
+
+function loadActualConfig() {
+  if (!fs.existsSync(process.argv[2])) {
+    core.info('No configuration file found')
+    return undefined
+  } else {
+    const rawActualConfig = fs.readFileSync(process.argv[2], 'utf8')
+    core.startGroup('Actual generated user config')
+    core.info(rawActualConfig)
+    core.endGroup()
+
+    return yaml.load(rawActualConfig)
+  }
+}

.github/actions/check-sarif/action.yml

@@ -0,0 +1,20 @@
+name: Check SARIF
+description: Checks a SARIF file to see if certain queries were run and others were not run.
+inputs:
+  sarif-file:
+    required: true
+    description: The SARIF file to check
+
+  queries-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should be included in this SARIF file.
+
+  queries-not-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should NOT be included in this SARIF file.
+
+runs:
+  using: node24
+  main: index.js

.github/actions/prepare-mergeback-branch/action.yml

@@ -0,0 +1,80 @@
+name: "Prepare mergeback branch"
+description: Prepares a mergeback branch and opens a PR for it
+inputs:
+  base:
+    description: "The name of the base branch"
+    required: true
+  head:
+    description: "The name of the head branch"
+    required: true
+  branch:
+    description: "The name of the branch to create."
+    required: true
+  version:
+    description: "The new version"
+    required: true
+  token:
+    description: "The token to use"
+    required: true
+  dry-run:
+    description: "Set to true to skip creating the PR. The branch will still be pushed."
+    default: "false"
+runs:
+  using: composite
+  steps:
+    - name: Create mergeback branch
+      shell: bash
+      env:
+        VERSION: "${{ inputs.version }}"
+        NEW_BRANCH: "${{ inputs.branch }}"
+      run: |
+        set -exu
+
+        # Ensure we are on the new branch
+        git checkout "${NEW_BRANCH}"
+
+        # Update the version number ready for the next release
+        npm version patch --no-git-tag-version
+
+        # Update the changelog, adding a new version heading directly above the most recent existing one
+        awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+        git add .
+        git commit -m "Update changelog and version after ${VERSION}"
+
+        git push origin "${NEW_BRANCH}"
+
+    - name: Create PR
+      shell: bash
+      if: inputs.dry-run != 'true'
+      env:
+        VERSION: "${{ inputs.version }}"
+        BASE_BRANCH: "${{ inputs.base }}"
+        HEAD_BRANCH: "${{ inputs.head }}"
+        NEW_BRANCH: "${{ inputs.branch }}"
+        GITHUB_TOKEN: "${{ inputs.token }}"
+      run: |
+        set -exu
+        pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+        pr_body=$(cat << EOF
+          This PR bumps the version number and updates the changelog after the ${VERSION} release.
+
+          Please do the following:
+
+          - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.
+          - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.
+          - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+          - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                selected rather than "Squash and merge" or "Rebase and merge".
+        EOF
+        )
+
+        # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+        # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+        gh pr create \
+          --head "${NEW_BRANCH}" \
+          --base "${BASE_BRANCH}" \
+          --title "${pr_title}" \
+          --label "Rebuild" \
+          --body "${pr_body}" \
+          --assignee "${GITHUB_ACTOR}" \
+          --draft

.github/actions/prepare-test/action.yml

@@ -0,0 +1,79 @@
+name: "Prepare test"
+description: Performs some preparation to run tests
+inputs:
+  version:
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    required: true
+  use-all-platform-bundle:
+    description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
+    default: 'false'
+    required: false
+  setup-kotlin:
+    description: "If true, we setup kotlin"
+    default: 'true'
+    required: true
+outputs:
+  tools-url:
+    description: "The value that should be passed as the 'tools' input of the 'init' step."
+    value: ${{ steps.get-url.outputs.tools-url }}
+runs:
+  using: composite
+  steps:
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+        mv ../action/.github/workflows .github
+    - id: get-url
+      name: Determine URL
+      shell: bash
+      env:
+        VERSION: ${{ inputs.version }}
+        USE_ALL_PLATFORM_BUNDLE: ${{ inputs.use-all-platform-bundle }}
+      run: |
+        set -e # Fail this Action if `gh release list` fails.
+
+        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
+          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ "$VERSION" == "linked" ]]; then
+          echo "tools-url=linked" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ "$VERSION" == "toolcache" ]]; then
+          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ "$VERSION" == "default" ]]; then
+          echo "tools-url=" >> "$GITHUB_OUTPUT"
+          exit 0
+        fi
+
+        if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
+          artifact_name="codeql-bundle.tar.gz"
+        elif [[ "$RUNNER_OS" == "Linux" ]]; then
+          artifact_name="codeql-bundle-linux64.tar.gz"
+        elif [[ "$RUNNER_OS" == "macOS" ]]; then
+          artifact_name="codeql-bundle-osx64.tar.gz"
+        elif [[ "$RUNNER_OS" == "Windows" ]]; then
+          artifact_name="codeql-bundle-win64.tar.gz"
+        else
+          echo "::error::Unrecognized OS $RUNNER_OS"
+          exit 1
+        fi
+
+        if [[ "$VERSION" == *"nightly"* ]]; then
+          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ "$VERSION" == *"stable"* ]]; then
+          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+          echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
+        else
+          echo "::error::Unrecognized version specified!"
+          exit 1
+        fi
+
+    - uses: fwilhe2/setup-kotlin@9c245a6425255f5e98ba1ce6c15d31fce7eca9da
+      if: ${{ inputs.setup-kotlin == 'true' }}
+      with:
+        version: 1.8.21

.github/actions/query-filter-test/action.yml

@@ -0,0 +1,62 @@
+name: Query Filter Test
+description: Runs a test of query filters using the check SARIF action
+inputs:
+  sarif-file:
+    required: true
+    description: The SARIF file to check
+
+  queries-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should be included in this SARIF file.
+
+  queries-not-run:
+    required: true
+    description: |
+      Comma separated list of query ids that should NOT be included in this SARIF file.
+
+  config-file:
+    required: true
+    description: |
+      The location of the codeql configuration file to use.
+
+  tools:
+    required: true
+    description: |
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
+
+runs:
+  using: composite
+  steps:
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        config-file: ${{ inputs.config-file }}
+        tools: ${{ inputs.tools }}
+        db-location: ${{ runner.temp }}/query-filter-test
+      env:
+        CODEQL_ACTION_TEST_MODE: "true"
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload: never
+      env:
+        CODEQL_ACTION_TEST_MODE: "true"
+    - name: Check SARIF
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file:  ${{ inputs.sarif-file }}
+        queries-run: ${{ inputs.queries-run}}
+        queries-not-run: ${{ inputs.queries-not-run}}
+    - name: Cleanup after test
+      shell: bash
+      run: rm -rf "$RUNNER_TEMP/results" "$RUNNER_TEMP/query-filter-test"

.github/actions/release-branches/action.yml

@@ -0,0 +1,28 @@
+name: 'Release branches'
+description: 'Determine branches for release & backport'
+inputs:
+  major_version:
+    description: 'The version as extracted from the package.json file'
+    required: true
+  latest_tag:
+    description: 'The most recent tag published to the repository'
+    required: true
+outputs:
+  backport_source_branch:
+    description: "The release branch for the given tag"
+    value: ${{ steps.branches.outputs.backport_source_branch }}
+  backport_target_branches:
+    description: "JSON encoded list of branches to target with backports"
+    value: ${{ steps.branches.outputs.backport_target_branches }}
+runs:
+  using: "composite"
+  steps:
+    - id: branches
+      env:
+        MAJOR_VERSION: ${{ inputs.major_version }}
+        LATEST_TAG: ${{ inputs.latest_tag }}
+      run: |
+        python ${{ github.action_path }}/release-branches.py \
+            --major-version "$MAJOR_VERSION" \
+            --latest-tag "$LATEST_TAG"
+      shell: bash

.github/actions/release-branches/release-branches.py

@@ -0,0 +1,55 @@
+import argparse
+import json
+import os
+import configparser
+
+# Name of the remote
+ORIGIN = 'origin'
+
+script_dir = os.path.dirname(os.path.realpath(__file__))
+grandparent_dir = os.path.dirname(os.path.dirname(script_dir))
+
+config = configparser.ConfigParser()
+with open(os.path.join(grandparent_dir, 'releases.ini')) as stream:
+    config.read_string('[default]\n' + stream.read())
+
+OLDEST_SUPPORTED_MAJOR_VERSION = int(config['default']['OLDEST_SUPPORTED_MAJOR_VERSION'])
+
+def main():
+
+  parser = argparse.ArgumentParser()
+  parser.add_argument("--major-version", required=True, type=str, help="The major version of the release")
+  parser.add_argument("--latest-tag", required=True, type=str, help="The most recent tag published to the repository")
+  args = parser.parse_args()
+
+  major_version = args.major_version
+  latest_tag = args.latest_tag
+
+  print("major_version: " + major_version)
+  print("latest_tag: " + latest_tag)
+
+  # If this is a primary release, we backport to all supported branches,
+  # so we check whether the major_version taken from the package.json
+  # is greater than or equal to the latest tag pulled from the repo.
+  # For example...
+  #     'v1' >= 'v2' is False # we're operating from an older release branch and should not backport
+  #     'v2' >= 'v2' is True  # the normal case where we're updating the current version
+  #     'v3' >= 'v2' is True  # in this case we are making the first release of a new major version
+  consider_backports = ( major_version >= latest_tag.split(".")[0] )
+
+  with open(os.environ["GITHUB_OUTPUT"], "a") as f:
+
+    f.write(f"backport_source_branch=releases/{major_version}\n")
+
+    backport_target_branches = []
+
+    if consider_backports:
+      for i in range(int(major_version.strip("v"))-1, 0, -1):
+        branch_name = f"releases/v{i}"
+        if i >= OLDEST_SUPPORTED_MAJOR_VERSION:
+          backport_target_branches.append(branch_name)
+
+    f.write("backport_target_branches="+json.dumps(backport_target_branches)+"\n")
+
+if __name__ == "__main__":
+  main()

.github/actions/release-initialise/action.yml

@@ -0,0 +1,33 @@
+name: 'Prepare release job'
+description: 'Prepare for updating a release branch'
+
+runs:
+  using: "composite"
+  steps:
+
+    - name: Dump environment
+      run: env
+      shell: bash
+
+    - name: Dump GitHub context
+      env:
+        GITHUB_CONTEXT: '${{ toJson(github) }}'
+      run: echo "$GITHUB_CONTEXT"
+      shell: bash
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: 3.12
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install PyGithub==2.3.0 requests
+      shell: bash
+
+    - name: Update git config
+      run: |
+        git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+        git config --global user.name "github-actions[bot]"
+      shell: bash

.github/actions/update-bundle/action.yml

@@ -0,0 +1,14 @@
+name: Update default CodeQL bundle
+description: Updates 'src/defaults.json' to point to a new CodeQL bundle release.
+
+runs:
+  using: composite
+  steps:
+    - name: Install ts-node
+      shell: bash
+      run: npm install -g ts-node
+
+    - name: Run update script
+      working-directory: ${{ github.action_path }}
+      shell: bash
+      run: ts-node ./index.ts

.github/actions/update-bundle/index.ts

@@ -0,0 +1,67 @@
+import * as fs from 'fs';
+import * as github from '@actions/github';
+
+interface BundleInfo {
+  bundleVersion: string;
+  cliVersion: string;
+}
+
+interface Defaults {
+  bundleVersion: string;
+  cliVersion: string;
+  priorBundleVersion: string;
+  priorCliVersion: string;
+}
+
+function getCodeQLCliVersionForRelease(release): string {
+  // We do not currently tag CodeQL bundles based on the CLI version they contain.
+  // Instead, we use a marker file `cli-version-<version>.txt` to record the CLI version.
+  // This marker file is uploaded as a release asset for all new CodeQL bundles.
+  const cliVersionsFromMarkerFiles = release.assets
+    .map((asset) => asset.name.match(/cli-version-(.*)\.txt/)?.[1])
+    .filter((v) => v)
+    .map((v) => v as string);
+  if (cliVersionsFromMarkerFiles.length > 1) {
+    throw new Error(
+      `Release ${release.tag_name} has multiple CLI version marker files.`
+    );
+  } else if (cliVersionsFromMarkerFiles.length === 0) {
+    throw new Error(
+      `Failed to find the CodeQL CLI version for release ${release.tag_name}.`
+    );
+  }
+  return cliVersionsFromMarkerFiles[0];
+}
+
+async function getBundleInfoFromRelease(release): Promise<BundleInfo> {
+  return {
+    bundleVersion: release.tag_name,
+    cliVersion: getCodeQLCliVersionForRelease(release)
+  };
+}
+
+async function getNewDefaults(currentDefaults: Defaults): Promise<Defaults> {
+  const release = github.context.payload.release;
+  console.log('Updating default bundle as a result of the following release: ' +
+    `${JSON.stringify(release)}.`)
+
+  const bundleInfo = await getBundleInfoFromRelease(release);
+  return {
+    bundleVersion: bundleInfo.bundleVersion,
+    cliVersion: bundleInfo.cliVersion,
+    priorBundleVersion: currentDefaults.bundleVersion,
+    priorCliVersion: currentDefaults.cliVersion
+  };
+}
+
+async function main() {
+  const previousDefaults: Defaults = JSON.parse(fs.readFileSync('../../../src/defaults.json', 'utf8'));
+  const newDefaults = await getNewDefaults(previousDefaults);
+  // Update the source file in the repository. Calling workflows should subsequently rebuild
+  // the Action to update `lib/defaults.json`.
+  fs.writeFileSync('../../../src/defaults.json', JSON.stringify(newDefaults, null, 2) + "\n");
+}
+
+// Ideally, we'd await main() here, but that doesn't work well with `ts-node`.
+// So instead we rely on the fact that Node won't exit until the event loop is empty.
+main();

.github/check-codescanning-config/action.yml

@@ -1,60 +0,0 @@
-name: Check Code-Scanning Config
-description: |
-    Checks the code scanning configuration file generated by the
-    action to ensure it contains the expected contents
-inputs:
-  languages:
-    required: false
-    description: The languages field passed to the init action.
-
-  packs:
-    required: false
-    description: The packs field passed to the init action.
-
-  queries:
-    required: false
-    description: The queries field passed to the init action.
-
-  config-file-test:
-    required: false
-    description: |
-      The location of the config file to use. If empty,
-      then no config file is used.
-
-  expected-config-file-contents:
-    required: true
-    description: |
-      A JSON string containing the exact contents of the config file.
-
-  tools:
-    required: true
-    description: |
-      The url of codeql to use.
-
-runs:
-  using: composite
-  steps:
-    - uses: ./../action/init
-      with:
-        languages: ${{ inputs.languages }}
-        config-file: ${{ inputs.config-file-test }}
-        queries: ${{ inputs.queries }}
-        packs: ${{ inputs.packs }}
-        tools: ${{ inputs.tools }}
-        db-location: ${{ runner.temp }}/codescanning-config-cli-test
-
-    - name: Install dependencies
-      shell: bash
-      run: npm install --location=global ts-node js-yaml
-
-    - name: Check config
-      working-directory: ${{ github.action_path }}
-      shell: bash
-      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
-
-    - name: Clean up
-      shell: bash
-      if: always()
-      run: |
-        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
-        rm -rf ${{ runner.temp }}/user-config.yaml

.github/check-codescanning-config/index.ts

@@ -1,39 +0,0 @@
-
-import * as core from '@actions/core'
-import * as yaml from 'js-yaml'
-import * as fs from 'fs'
-import * as assert from 'assert'
-
-const actualConfig = loadActualConfig()
-
-const rawExpectedConfig = process.argv[3].trim()
-if (!rawExpectedConfig) {
-  core.info('No expected configuration provided')
-} else {
-  core.startGroup('Expected generated user config')
-  core.info(yaml.dump(JSON.parse(rawExpectedConfig)))
-  core.endGroup()
-}
-
-const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
-
-assert.deepStrictEqual(
-  actualConfig,
-  expectedConfig,
-  'Expected configuration does not match actual configuration'
-);
-
-
-function loadActualConfig() {
-  if (!fs.existsSync(process.argv[2])) {
-    core.info('No configuration file found')
-    return undefined
-  } else {
-    const rawActualConfig = fs.readFileSync(process.argv[2], 'utf8')
-    core.startGroup('Actual generated user config')
-    core.info(rawActualConfig)
-    core.endGroup()
-
-    return yaml.load(rawActualConfig)
-  }
-}

.github/check-sarif/action.yml

@@ -1,20 +0,0 @@
-name: Check SARIF
-description: Checks a SARIF file to see if certain queries were run and others were not run.
-inputs:
-  sarif-file:
-    required: true
-    description: The SARIF file to check
-
-  queries-run:
-    required: true
-    description: |
-      Comma separated list of query ids that should be included in this SARIF file.
-
-  queries-not-run:
-    required: true
-    description: |
-      Comma separated list of query ids that should NOT be included in this SARIF file.
-
-runs:
-  using: node12
-  main: index.js

.github/codeql/codeql-config-javascript.yml

@@ -0,0 +1,15 @@
+name: "CodeQL config"
+queries: 
+  - name: Run custom queries
+    uses: ./queries
+  # Run all extra query suites, both because we want to
+  # and because it'll act as extra testing. This is why
+  # we include both even though one is a superset of the
+  # other, because we're testing the parsing logic and
+  # that the suites exist in the codeql bundle.
+  - uses: security-and-quality
+  - uses: security-experimental
+  - uses: security-extended
+paths-ignore:
+  - lib
+  - tests

.github/codeql/codeql-config.yml

@@ -1,14 +0,0 @@
-name: "CodeQL config"
-queries: 
-  - name: Run custom queries
-    uses: ./queries
-  # Run all extra query suites, both because we want to
-  # and because it'll act as extra testing. This is why
-  # we include both even though one is a superset of the
-  # other, because we're testing the parsing logic and
-  # that the suites exist in the codeql bundle.
-  - uses: security-extended
-  - uses: security-and-quality
-paths-ignore:
-  - tests
-  - lib

.github/copilot-instructions.md

@@ -0,0 +1,21 @@
+# CodeQL Action - Copilot Instructions
+
+## Generated code
+
+The CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from.
+
+GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that start with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.
+
+## Release process
+
+- A release-PR is a PR which matches all of the following patterns:
+  - PR title starts with the exact prefix: `Merge main into releases/v`
+    - Equivalent regex: `^Merge main into releases\/v`
+  - AND head (source) branch matches the update-branch pattern:
+    - Regex: `^update-v[0-9]+(?:\.[0-9]+)*(?:-[a-f0-9]+)?` (e.g. `update-v3.29.9-cc722e476`)
+  - AND base (target) branch matches a release branch:
+    - Regex: `^releases\/v` (e.g. `releases/v3`)
+
+- Consider all files in release-PRs to have already been reviewed and do not review them, except for the following two files:
+    - `CHANGELOG.md`
+    - `package.json`

.github/dependabot.yml

@@ -1,20 +1,39 @@
 version: 2
 updates:
-  - package-ecosystem: "npm"
+  - package-ecosystem: npm
     directory: "/"
     schedule:
-      interval: "weekly"
-      day: "thursday" # Gives us a working day to merge this before our typical release
+      interval: weekly
     labels:
-      - "Update dependencies"
+      - Rebuild
+    # Ignore incompatible dependency updates
     ignore:
-      - dependency-name: "*"
-        update-types: ["version-update:semver-minor", "version-update:semver-patch"]
-  - package-ecosystem: "npm"
-    directory: "/runner"
+      # There is a type incompatibility issue between v0.0.9 and our other dependencies.
+      - dependency-name: "@octokit/plugin-retry"
+        versions: ["~6.0.0"]
+      # This is broken due to the way configuration files have changed. 
+      # This might be fixed when we move to eslint v9.
+      - dependency-name: "eslint-plugin-import"
+        versions: [">=2.30.0"]
+    groups:
+      npm-minor:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"
+  - package-ecosystem: github-actions
+    directories:
+      - "/.github/workflows"
+      - "/.github/actions"
     schedule:
-      interval: "weekly"
-      day: "thursday" # Gives us a working day to merge this before our typical release
-    ignore:
-      - dependency-name: "*"
-        update-types: ["version-update:semver-minor", "version-update:semver-patch"]
+      interval: weekly
+    labels:
+      - Rebuild
+    groups:
+      actions-minor:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"

.github/prepare-test/action.yml

@@ -1,38 +0,0 @@
-name: "Prepare test"
-description: Performs some preparation to run tests
-inputs:
-  version:
-    required: true
-outputs:
-  tools-url:
-    value: ${{ steps.get-url.outputs.tools-url }}
-runs:
-  using: composite
-  steps:
-    - name: Move codeql-action
-      shell: bash
-      run: |
-        mkdir ../action
-        mv * .github ../action/
-        mv ../action/tests/multi-language-repo/{*,.github} .
-        mv ../action/.github/workflows .github
-    - id: get-url
-      name: Determine URL
-      shell: bash
-      run: |
-        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
-          export LATEST=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
-          echo "::set-output name=tools-url::https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$LATEST/codeql-bundle.tar.gz"
-        elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
-          export VERSION=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
-          echo "::set-output name=tools-url::https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$VERSION-manual/codeql-bundle.tar.gz"
-        elif [[ ${{ inputs.version }} == *"stable"* ]]; then
-          export VERSION=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
-          echo "::set-output name=tools-url::https://github.com/github/codeql-action/releases/download/codeql-bundle-$VERSION/codeql-bundle.tar.gz"
-        elif [[ ${{ inputs.version }} == "latest" ]]; then
-          echo "::set-output name=tools-url::latest"
-        elif [[ ${{ inputs.version }} == "cached" ]]; then
-          echo "::set-output name=tools-url::"
-        else
-          echo "::error Unrecognized version specified!"
-        fi

.github/pull_request_template.md

@@ -1,5 +1,61 @@
+<!--
+    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
+                      If necessary, link to this PR from an internal issue and include further details there.
+
+    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
+              chose the approach you did if applicable. Indicate any open questions you want to answer
+              during the review process and anything you want reviewers to pay particular attention to.
+
+    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
+-->
+
+### Risk assessment
+
+For internal use only. Please select the risk level of this change:
+
+- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
+- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
+
+#### Which use cases does this change impact?
+
+<!-- Delete options that don't apply. -->
+
+- **Advanced setup** - Impacts users who have custom workflows.
+- **Default setup** - Impacts users who use default setup.
+- **Code Scanning** - Impacts Code Scanning (i.e. `analysis-kinds: code-scanning`).
+- **Code Quality** - Impacts Code Quality (i.e. `analysis-kinds: code-quality`).
+- **Third-party analyses** - Impacts third-party analyses (i.e. `upload-sarif`).
+- **GHES** - Impacts GitHub Enterprise Server.
+
+#### How did/will you validate this change?
+
+<!-- Delete options that don't apply. -->
+
+- **Test repository** - This change will be tested on a test repository before merging.
+- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
+- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
+- **Other** - Please provide details.
+- **None** - I am not validating these changes.
+
+#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
+
+<!-- Delete strategies that don't apply. -->
+
+- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
+- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
+- **Other** - Please provide details.
+
+#### How will you know if something goes wrong after this change is released?
+
+<!-- Delete options that don't apply. -->
+
+- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
+    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
+    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
+- **Other** - Please provide details.
+
 ### Merge / deployment checklist
 
-- [ ] Confirm this change is backwards compatible with existing workflows.
-- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
-- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.
+- Confirm this change is backwards compatible with existing workflows.
+- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
+- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.

.github/query-filter-test/action.yml

@@ -1,54 +0,0 @@
-name: Query Filter Test
-description: Runs a test of query filters using the check SARIF action
-inputs:
-  sarif-file:
-    required: true
-    description: The SARIF file to check
-
-  queries-run:
-    required: true
-    description: |
-      Comma separated list of query ids that should be included in this SARIF file.
-
-  queries-not-run:
-    required: true
-    description: |
-      Comma separated list of query ids that should NOT be included in this SARIF file.
-
-  config-file:
-    required: true
-    description: |
-      The location of the codeql configuration file to use.
-
-  tools:
-    required: true
-    description: |
-      The url of codeql to use.
-
-runs:
-  using: composite
-  steps:
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        config-file: ${{ inputs.config-file }}
-        tools: ${{ inputs.tools }}
-        db-location: ${{ runner.temp }}/query-filter-test
-      env:
-        TEST_MODE: "true"
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-        upload: false
-      env:
-        TEST_MODE: "true"
-    - name: Check SARIF
-      uses: ./../action/.github/check-sarif
-      with:
-        sarif-file:  ${{ inputs.sarif-file }}
-        queries-run: ${{ inputs.queries-run}}
-        queries-not-run: ${{ inputs.queries-not-run}}
-    - name: Cleanup after test
-      shell: bash
-      run: rm -rf "$RUNNER_TEMP/results" "$RUNNER_TEMP/query-filter-test"

.github/releases.ini

@@ -0,0 +1 @@
+OLDEST_SUPPORTED_MAJOR_VERSION=3

.github/update-release-branch.py

@@ -1,11 +1,13 @@
 import argparse
 import datetime
+import fileinput
+import re
 from github import Github
 import json
 import os
 import subprocess
 
-EMPTY_CHANGELOG = """# CodeQL Action and CodeQL Runner Changelog
+EMPTY_CHANGELOG = """# CodeQL Action Changelog
 
 ## [UNRELEASED]
 
@@ -13,14 +15,9 @@ No user facing changes.
 
 """
 
-# Value of the mode flag for a v1 release
-V1_MODE = 'v1-release'
-
-# Value of the mode flag for a v2 release
-V2_MODE = 'v2-release'
-
-SOURCE_BRANCH_FOR_MODE = { V1_MODE: 'releases/v2', V2_MODE: 'main' }
-TARGET_BRANCH_FOR_MODE = { V1_MODE: 'releases/v1', V2_MODE: 'releases/v2' }
+# NB: This exact commit message is used to find commits for reverting during backports.
+# Changing it requires a transition period where both old and new versions are supported.
+BACKPORT_COMMIT_MESSAGE = 'Update version and changelog for v'
 
 # Name of the remote
 ORIGIN = 'origin'
@@ -32,7 +29,7 @@ def run_git(*args, allow_non_zero_exit_code=False):
   cmd = ['git', *args]
   p = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
   if not allow_non_zero_exit_code and p.returncode != 0:
-    raise Exception('Call to ' + ' '.join(cmd) + ' exited with code ' + str(p.returncode) + ' stderr:' + p.stderr.decode('ascii'))
+    raise Exception(f'Call to {" ".join(cmd)} exited with code {p.returncode} stderr: {p.stderr.decode("ascii")}.')
   return p.stdout.decode('ascii')
 
 # Returns true if the given branch exists on the origin remote
@@ -42,21 +39,21 @@ def branch_exists_on_remote(branch_name):
 # Opens a PR from the given branch to the target branch
 def open_pr(
   repo, all_commits, source_branch_short_sha, new_branch_name, source_branch, target_branch,
-  conductor, is_v2_release, labels, conflicted_files):
+  conductor, is_primary_release, conflicted_files):
   # Sort the commits into the pull requests that introduced them,
   # and any commits that don't have a pull request
   pull_requests = []
   commits_without_pull_requests = []
   for commit in all_commits:
-    pr = get_pr_for_commit(repo, commit)
+    pr = get_pr_for_commit(commit)
 
     if pr is None:
       commits_without_pull_requests.append(commit)
     elif not any(p for p in pull_requests if p.number == pr.number):
       pull_requests.append(pr)
 
-  print('Found ' + str(len(pull_requests)) + ' pull requests')
-  print('Found ' + str(len(commits_without_pull_requests)) + ' commits not in a pull request')
+  print(f'Found {len(pull_requests)} pull requests.')
+  print(f'Found {len(commits_without_pull_requests)} commits not in a pull request.')
 
   # Sort PRs and commits by age
   pull_requests = sorted(pull_requests, key=lambda pr: pr.number)
@@ -64,7 +61,7 @@ def open_pr(
 
   # Start constructing the body text
   body = []
-  body.append('Merging ' + source_branch_short_sha + ' into ' + target_branch)
+  body.append(f'Merging {source_branch_short_sha} into `{target_branch}`.')
 
   body.append('')
   body.append(f'Conductor for this PR is @{conductor}.')
@@ -96,32 +93,33 @@ def open_pr(
       'branch to resolve the merge conflicts.')
   body.append(' - [ ] Ensure the CHANGELOG displays the correct version and date.')
   body.append(' - [ ] Ensure the CHANGELOG includes all relevant, user-facing changes since the last release.')
-  body.append(' - [ ] Check that there are not any unexpected commits being merged into the ' + target_branch + ' branch.')
+  body.append(f' - [ ] Check that there are not any unexpected commits being merged into the `{target_branch}` branch.')
   body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
-  if not is_v2_release:
-    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
-    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
-    body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
+  if not is_primary_release:
+    body.append(' - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.')
 
+  body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
   body.append(' - [ ] Approve and merge this PR. Make sure `Create a merge commit` is selected rather than `Squash and merge` or `Rebase and merge`.')
 
-  if is_v2_release:
+  if is_primary_release:
     body.append(' - [ ] Merge the mergeback PR that will automatically be created once this PR is merged.')
-    body.append(' - [ ] Merge the v1 release PR that will automatically be created once this PR is merged.')
+    body.append(' - [ ] Merge all backport PRs to older release branches, that will automatically be created once this PR is merged.')
 
-  title = 'Merge ' + source_branch + ' into ' + target_branch
+  title = f'Merge {source_branch} into {target_branch}'
+  labels = ['Rebuild'] if not is_primary_release else []
 
   # Create the pull request
   # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
   # a maintainer can take the PR out of draft, thereby triggering the PR checks.
   pr = repo.create_pull(title=title, body='\n'.join(body), head=new_branch_name, base=target_branch, draft=True)
   pr.add_to_labels(*labels)
-  print('Created PR #' + str(pr.number))
+  print(f'Created PR #{str(pr.number)}')
 
   # Assign the conductor
   pr.add_to_assignees(conductor)
-  print('Assigned PR to ' + conductor)
+  print(f'Assigned PR to {conductor}')
 
 # Gets a list of the SHAs of all commits that have happened on the source branch
 # since the last release to the target branch.
@@ -130,7 +128,7 @@ def open_pr(
 def get_commit_difference(repo, source_branch, target_branch):
   # Passing split nothing means that the empty string splits to nothing: compare `''.split() == []`
   # to `''.split('\n') == ['']`.
-  commits = run_git('log', '--pretty=format:%H', ORIGIN + '/' + target_branch + '..' + ORIGIN + '/' + source_branch).strip().split()
+  commits = run_git('log', '--pretty=format:%H', f'{ORIGIN}/{target_branch}..{ORIGIN}/{source_branch}').strip().split()
 
   # Convert to full-fledged commit objects
   commits = [repo.get_commit(c) for c in commits]
@@ -146,13 +144,13 @@ def is_pr_merge_commit(commit):
 def get_truncated_commit_message(commit):
   message = commit.commit.message.split('\n')[0]
   if len(message) > 60:
-    return message[:57] + '...'
+    return f'{message[:57]}...'
   else:
     return message
 
 # Converts a commit into the PR that introduced it to the source branch.
 # Returns the PR object, or None if no PR could be found.
-def get_pr_for_commit(repo, commit):
+def get_pr_for_commit(commit):
   prs = commit.get_pulls()
 
   if prs.totalCount > 0:
@@ -174,10 +172,78 @@ def get_current_version():
   with open('package.json', 'r') as f:
     return json.load(f)['version']
 
+# `npm version` doesn't always work because of merge conflicts, so we
+# replace the version in package.json textually.
+def replace_version_package_json(prev_version, new_version):
+  prev_line_is_codeql = False
+  for line in fileinput.input('package.json', inplace = True, encoding='utf-8'):
+    if prev_line_is_codeql and f'\"version\": \"{prev_version}\"' in line:
+      print(line.replace(prev_version, new_version), end='')
+    else:
+      prev_line_is_codeql = False
+      print(line, end='') 
+    if '\"name\": \"codeql\",' in line:
+        prev_line_is_codeql = True 
+
 def get_today_string():
   today = datetime.datetime.today()
   return '{:%d %b %Y}'.format(today)
 
+def process_changelog_for_backports(source_branch_major_version, target_branch_major_version):
+
+  # changelog entries can use the following format to indicate
+  # that they only apply to newer versions
+  some_versions_only_regex = re.compile(r'\[v(\d+)\+ only\]')
+
+  output = ''
+
+  with open('CHANGELOG.md', 'r') as f:
+
+    # until we find the first section, just duplicate all lines
+    found_first_section = False
+    while not found_first_section:
+      line = f.readline()
+      if not line:
+        raise Exception('Could not find any change sections in CHANGELOG.md') # EOF
+
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        found_first_section = True
+
+      output += line
+
+    # found_content tracks whether we hit two headings in a row
+    found_content = False
+    output += '\n'
+    while True:
+      line = f.readline()
+      if not line:
+        break # EOF
+      line = line.rstrip('\n')
+
+      # filter out changenote entries that apply only to newer versions
+      match = some_versions_only_regex.search(line)
+      if match:
+        if int(target_branch_major_version) < int(match.group(1)):
+          continue
+
+      if line.startswith('## '):
+        line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
+        if found_content == False:
+          # we have found two headings in a row, so we need to add the placeholder message.
+          output += 'No user facing changes.\n'
+        found_content = False
+        output += f'\n{line}\n\n'
+      else:
+        if line.strip() != '':
+          found_content = True
+          # we use the original line here, rather than the stripped version
+          # so that we preserve indentation
+          output += line + '\n'
+
+    with open('CHANGELOG.md', 'w') as f:
+      f.write(output)
+
 def update_changelog(version):
   if (os.path.exists('CHANGELOG.md')):
     content = ''
@@ -186,7 +252,7 @@ def update_changelog(version):
   else:
     content = EMPTY_CHANGELOG
 
-  newContent = content.replace('[UNRELEASED]', version + ' - ' + get_today_string(), 1)
+  newContent = content.replace('[UNRELEASED]', f'{version} - {get_today_string()}', 1)
 
   with open('CHANGELOG.md', 'w') as f:
     f.write(newContent)
@@ -208,14 +274,22 @@ def main():
     help='The nwo of the repository, for example github/codeql-action.'
   )
   parser.add_argument(
-    '--mode',
+    '--source-branch',
     type=str,
     required=True,
-    choices=[V2_MODE, V1_MODE],
-    help=f"Which release to perform. '{V2_MODE}' uses {SOURCE_BRANCH_FOR_MODE[V2_MODE]} as the source " +
-      f"branch and {TARGET_BRANCH_FOR_MODE[V2_MODE]} as the target branch. " +
-      f"'{V1_MODE}' uses {SOURCE_BRANCH_FOR_MODE[V1_MODE]} as the source branch and " +
-      f"{TARGET_BRANCH_FOR_MODE[V1_MODE]} as the target branch."
+    help='Source branch for release branch update.'
+  )
+  parser.add_argument(
+    '--target-branch',
+    type=str,
+    required=True,
+    help='Target branch for release branch update.'
+  )
+  parser.add_argument(
+    '--is-primary-release',
+    action='store_true',
+    default=False,
+    help='Whether this update is the primary release for the current major version.'
   )
   parser.add_argument(
     '--conductor',
@@ -226,71 +300,81 @@ def main():
 
   args = parser.parse_args()
 
-  source_branch = SOURCE_BRANCH_FOR_MODE[args.mode]
-  target_branch = TARGET_BRANCH_FOR_MODE[args.mode]
+  source_branch = args.source_branch
+  target_branch = args.target_branch
+  is_primary_release = args.is_primary_release
 
   repo = Github(args.github_token).get_repo(args.repository_nwo)
-  version = get_current_version()
 
-  if args.mode == V1_MODE:
-    # Change the version number to a v1 equivalent
-    version = get_current_version()
-    version = f'1{version[1:]}'
+  # the target branch will be of the form releases/vN, where N is the major version number
+  target_branch_major_version = target_branch.strip('releases/v')
+
+  # split version into major, minor, patch
+  _, v_minor, v_patch = get_current_version().split('.')
+
+  version = f"{target_branch_major_version}.{v_minor}.{v_patch}"
 
   # Print what we intend to go
-  print('Considering difference between ' + source_branch + ' and ' + target_branch)
-  source_branch_short_sha = run_git('rev-parse', '--short', ORIGIN + '/' + source_branch).strip()
-  print('Current head of ' + source_branch + ' is ' + source_branch_short_sha)
+  print(f'Considering difference between {source_branch} and {target_branch}...')
+  source_branch_short_sha = run_git('rev-parse', '--short', f'{ORIGIN}/{source_branch}').strip()
+  print(f'Current head of {source_branch} is {source_branch_short_sha}.')
 
   # See if there are any commits to merge in
   commits = get_commit_difference(repo=repo, source_branch=source_branch, target_branch=target_branch)
   if len(commits) == 0:
-    print('No commits to merge from ' + source_branch + ' to ' + target_branch)
+    print(f'No commits to merge from {source_branch} to {target_branch}.')
     return
 
+  # define distinct prefix in order to support specific pr checks on backports
+  branch_prefix = 'update' if is_primary_release else 'backport'
+
   # The branch name is based off of the name of branch being merged into
   # and the SHA of the branch being merged from. Thus if the branch already
   # exists we can assume we don't need to recreate it.
-  new_branch_name = 'update-v' + version + '-' + source_branch_short_sha
-  print('Branch name is ' + new_branch_name)
+  new_branch_name = f'{branch_prefix}-v{version}-{source_branch_short_sha}'
+  print(f'Branch name is {new_branch_name}.')
 
   # Check if the branch already exists. If so we can abort as this script
   # has already run on this combination of branches.
   if branch_exists_on_remote(new_branch_name):
-    print('Branch ' + new_branch_name + ' already exists. Nothing to do.')
+    print(f'Branch {new_branch_name} already exists. Nothing to do.')
     return
 
   # Create the new branch and push it to the remote
-  print('Creating branch ' + new_branch_name)
+  print(f'Creating branch {new_branch_name}.')
 
-  # The process of creating the v1 release can run into merge conflicts. We commit the unresolved
+  # The process of creating the v{Older} release can run into merge conflicts. We commit the unresolved
   # conflicts so a maintainer can easily resolve them (vs erroring and requiring maintainers to
   # reconstruct the release manually)
   conflicted_files = []
 
-  if args.mode == V1_MODE:
+  if not is_primary_release:
+
+    # the source branch will be of the form releases/vN, where N is the major version number
+    source_branch_major_version = source_branch.strip('releases/v')
+
     # If we're performing a backport, start from the target branch
     print(f'Creating {new_branch_name} from the {ORIGIN}/{target_branch} branch')
     run_git('checkout', '-b', new_branch_name, f'{ORIGIN}/{target_branch}')
 
     # Revert the commit that we made as part of the last release that updated the version number and
-    # changelog to refer to 1.x.x variants. This avoids merge conflicts in the changelog and
-    # package.json files when we merge in the v2 branch.
-    # This commit will not exist the first time we release the v1 branch from the v2 branch, so we
+    # changelog to refer to {older}.x.x variants. This avoids merge conflicts in the changelog and
+    # package.json files when we merge in the v{latest} branch.
+    # This commit will not exist the first time we release the v{N-1} branch from the v{N} branch, so we
     # use `git log --grep` to conditionally revert the commit.
-    print('Reverting the 1.x.x version number and changelog updates from the last release to avoid conflicts')
-    v1_update_commits = run_git('log', '--grep', '^Update version and changelog for v', '--format=%H').split()
+    print('Reverting the version number and changelog updates from the last release to avoid conflicts')
+    vOlder_update_commits = run_git('log', '--grep', f'^{BACKPORT_COMMIT_MESSAGE}', '--format=%H').split()
 
-    if len(v1_update_commits) > 0:
-      print(f'  Reverting {v1_update_commits[0]}')
+    if len(vOlder_update_commits) > 0:
+      print(f'  Reverting {vOlder_update_commits[0]}')
       # Only revert the newest commit as older ones will already have been reverted in previous
       # releases.
-      run_git('revert', v1_update_commits[0], '--no-edit')
+      run_git('revert', vOlder_update_commits[0], '--no-edit')
 
-      # Also revert the "Update checked-in dependencies" commit created by Actions.
-      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
-      print(f'  Reverting {update_dependencies_commit}')
-      run_git('revert', update_dependencies_commit, '--no-edit')
+      # Also revert the "Rebuild" commit created by Actions.
+      rebuild_commit = run_git('log', '--grep', '^Rebuild$', '--format=%H').split()[0]
+      print(f'  Reverting {rebuild_commit}')
+      run_git('revert', rebuild_commit, '--no-edit')
 
     else:
       print('  Nothing to revert.')
@@ -303,21 +387,18 @@ def main():
       run_git('add', '.')
       run_git('commit', '--no-edit')
 
-    # Migrate the package version number from a v2 version number to a v1 version number
-    print(f'Setting version number to {version}')
-    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
-    run_git('add', 'package.json', 'package-lock.json')
+    # Migrate the package version number from a vLatest version number to a vOlder version number
+    print(f'Setting version number to {version} in package.json')
+    replace_version_package_json(get_current_version(), version) # We rely on the `Rebuild` workflow to update package-lock.json
+    run_git('add', 'package.json')
 
-    # Migrate the changelog notes from v2 version numbers to v1 version numbers
-    print('Migrating changelog notes from v2 to v1')
-    subprocess.check_output(['sed', '-i', 's/^## 2\./## 1./g', 'CHANGELOG.md'])
-
-    # Remove changelog notes from v2 that don't apply to v1
-    subprocess.check_output(['sed', '-i', '/^- \[v2+ only\]/d', 'CHANGELOG.md'])
+    # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
+    print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')
+    process_changelog_for_backports(source_branch_major_version, target_branch_major_version)
 
     # Amend the commit generated by `npm version` to update the CHANGELOG
     run_git('add', 'CHANGELOG.md')
-    run_git('commit', '-m', f'Update version and changelog for v{version}')
+    run_git('commit', '-m', f'{BACKPORT_COMMIT_MESSAGE}{version}')
   else:
     # If we're performing a standard release, there won't be any new commits on the target branch,
     # as these will have already been merged back into the source branch. Therefore we can just
@@ -342,8 +423,7 @@ def main():
     source_branch=source_branch,
     target_branch=target_branch,
     conductor=args.conductor,
-    is_v2_release=args.mode == V2_MODE,
-    labels=['Update dependencies'] if args.mode == V1_MODE else [],
+    is_primary_release=is_primary_release,
     conflicted_files=conflicted_files
   )
 

.github/workflows/__all-platform-bundle.yml

@@ -0,0 +1,87 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - All-platform bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  all-platform-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: All-platform bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
@@ -10,88 +10,77 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   analyze-ref-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - autobuild-action
@@ -10,65 +10,75 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-action:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
     name: autobuild-action
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        languages: csharp
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/autobuild
-      env:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        env:
       # Explicitly disable the CLR tracer.
-        COR_ENABLE_PROFILING: ''
-        COR_PROFILER: ''
-        COR_PROFILER_PATH_64: ''
-        CORECLR_ENABLE_PROFILING: ''
-        CORECLR_PROFILER: ''
-        CORECLR_PROFILER_PATH_64: ''
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - name: Check database
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d csharp ]]; then
-          echo "Did not find a C# database"
-          exit 1
-        fi
+          COR_ENABLE_PROFILING: ''
+          COR_PROFILER: ''
+          COR_PROFILER_PATH_64: ''
+          CORECLR_ENABLE_PROFILING: ''
+          CORECLR_PROFILER: ''
+          CORECLR_PROFILER_PATH_64: ''
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d csharp ]]; then
+            echo "Did not find a C# database"
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,103 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Java
+        uses: actions/setup-java@v5
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  autobuild-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Autobuild working directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -0,0 +1,117 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  build-mode-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Build mode autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Java
+        uses: actions/setup-java@v5
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Install yq
+        if: runner.os == 'Windows'
+        run: |
+          choco install yq -y
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Check that indirect tracing is disabled
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -0,0 +1,95 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode manual
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  build-mode-manual:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode manual
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: manual
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "manual" ]]; then
+            echo "Expected build mode to be 'manual' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-none.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode none
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  build-mode-none:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode none
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "none" ]]; then
+            echo "Expected build mode to be 'none' but was $build_mode"
+            exit 1
+          fi
+
+  # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+      - uses: ./../action/autobuild
+        if: matrix.version != 'nightly-latest'
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-rollback.yml

@@ -0,0 +1,84 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Build mode rollback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  build-mode-rollback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode rollback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-toolcache.yml

@@ -0,0 +1,86 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: From toolcache'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  bundle-from-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: toolcache
+    name: 'Bundle: From toolcache'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache contains CodeQL
+        continue-on-error: true
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length === 0) {
+              throw new Error(`CodeQL could not be found in the toolcache`);
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Caching checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  bundle-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Caching checks'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -0,0 +1,122 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Zstandard checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  bundle-zstd:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Zstandard checks'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v8
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -0,0 +1,102 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  config-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Config export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          queries: security-extended
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check config properties appear in SARIF
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+            const configSummary = run.properties.codeqlConfigSummary;
+
+            if (configSummary === undefined) {
+              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+            }
+            if (configSummary.disableDefaultQueries !== false) {
+              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
+                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+            }
+            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+            // Use JSON.stringify to deep-equal the arrays.
+            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
+                `${JSON.stringify(configSummary.queries)}.`);
+            }
+            core.info('Finished config export tests.');
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-input.yml

@@ -0,0 +1,94 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Config input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  config-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Config input
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Install Node.js
+        uses: actions/setup-node@v5
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Copy queries into workspace
+        run: |
+          cp -a ../action/queries .
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+          build-mode: none
+          config: |
+            disable-default-queries: true
+            queries:
+              - name: Run custom query
+                uses: ./queries/default-setup-environment-variables.ql
+            paths-ignore:
+              - tests
+              - lib
+
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check SARIF
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/codeql-action/default-setup-env-vars
+          queries-not-run: javascript/codeql-action/default-setup-context-properties
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-disabled.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  cpp-deptrace-disabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: disabling autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+      - run: |
+          if ls /usr/bin/errno; then
+            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  cpp-deptrace-enabled-on-macos:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+          else
+            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  cpp-deptrace-enabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies (Linux)'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - run: |
+          if ! ls /usr/bin/errno; then
+            echo "Did not autoinstall errno"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__diagnostics-export.yml

@@ -0,0 +1,138 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Diagnostic export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  diagnostics-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Diagnostic export
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Add test diagnostics
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          "$CODEQL_PATH" database add-diagnostic \
+            "$RUNNER_TEMP/codeql_databases/javascript" \
+            --file-path /path/to/file \
+            --plaintext-message "Plaintext message" \
+            --source-id "lang/diagnostics/example" \
+            --source-name "Diagnostic name" \
+            --ready-for-status-page
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostics appear in SARIF
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            function checkStatusPageNotification(n) {
+              const expectedMessage = 'Plaintext message';
+              if (n.message.text !== expectedMessage) {
+                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+              }
+              if (n.locations.length !== 1) {
+                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+              }
+            }
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+            checkStatusPageNotification(statusPageNotifications[0]);
+
+            const notifications = run.tool.driver.notifications;
+            const diagnosticNotification = notifications.filter(n =>
+              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+                n.fullDescription.text === 'Diagnostic name'
+            );
+            if (diagnosticNotification.length !== 1) {
+              core.setFailed(
+                'Expected exactly one notification for this diagnostic in the ' +
+                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                  `${diagnosticNotification.length}. All notifications: ` +
+                  `${JSON.stringify(notifications)}.`
+              );
+            }
+
+            core.info('Finished diagnostic export test');
+    env:
+      CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__export-file-baseline-information.yml

@@ -0,0 +1,114 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Export file baseline information
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  export-file-baseline-information:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Export file baseline information
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+          if [[ $RUNNER_OS == "macOS" ]]; then
+            expected_baseline_languages+=" swift"
+          fi
+
+          for lang in ${expected_baseline_languages}; do
+            rule_name="cli/expected-extracted-files/${lang}"
+            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+            if [[ "${found_notification}" != "true" ]]; then
+              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+              exit 1
+            else
+              echo "Found notification '${rule_name}'."
+            fi
+          done
+    env:
+      CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test
@@ -10,59 +10,73 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   extractor-ram-threads:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
     name: Extractor ram and threads options test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        languages: java
-        ram: 230
-        threads: 1
-      env:
-        TEST_MODE: true
-    - name: Assert Results
-      shell: bash
-      run: |
-        if [ "${CODEQL_RAM}" != "230" ]; then
-          echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
-          exit 1
-        fi
-        if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
-          echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
-          exit 1
-        fi
-        if [ "${CODEQL_THREADS}" != "1" ]; then
-          echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
-          exit 1
-        fi
-        if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
-          echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: java
+          ram: 230
+          threads: 1
+      - name: Assert Results
+        run: |
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__global-proxy.yml

@@ -0,0 +1,86 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  global-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Proxy test
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+  # These steps are required to initialise the `gh` cli in a container that doesn't
+  # come pre-installed with it. The reason for that is that this is later
+  # needed by the `prepare-test` workflow to find the latest release of CodeQL.
+      - name: Set up GitHub CLI
+        run: |
+          apt update
+          apt install -y curl libreadline8 gnupg2 software-properties-common zstd
+          curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-key add /usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-add-repository https://cli.github.com/packages
+          apt install -y gh
+        env: {}
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+    env:
+      https_proxy: http://squid-proxy:3128
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
@@ -10,88 +10,76 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-custom-queries:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Go: Custom queries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        config-file: ./.github/codeql/custom-queries.yml
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          config-file: ./.github/codeql/custom-queries.yml
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-custom-tracing-autobuild.yml

@@ -1,86 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: 'PR Check - Go: Autobuild custom tracing'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  go-custom-tracing-autobuild:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-    name: 'Go: Autobuild custom tracing'
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/autobuild
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
-    env:
-      CODEQL_EXTRACTOR_GO_BUILD_TRACING: on
-      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-custom-tracing.yml

@@ -1,96 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: 'PR Check - Go: Custom tracing'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  go-custom-tracing:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
-    name: 'Go: Custom tracing'
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: go build main.go
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    env:
-      CODEQL_EXTRACTOR_GO_BUILD_TRACING: on
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -0,0 +1,111 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when Go is changed after init step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-indirect-tracing-workaround-diagnostic:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when Go is changed after init step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+  # Deliberately change Go after the `init` step
+      - uses: actions/setup-go@v6
+        with:
+          go-version: '1.20'
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -0,0 +1,112 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when `file` is not installed'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-indirect-tracing-workaround-no-file-program:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when `file` is not installed'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Remove `file` program
+        run: |
+          echo $(which file)
+          sudo rm -rf $(which file)
+          echo $(which file)
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -0,0 +1,106 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: workaround for indirect tracing'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-indirect-tracing-workaround:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: workaround for indirect tracing'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+              "CODEQL_ACTION_GO_BINARY environment variable is not set."
+            exit 1
+          fi
+          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+            exit 1
+          fi
+
+
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-reconciled-tracing-autobuilder.yml

@@ -1,91 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: 'PR Check - Go: Reconciled tracing with autobuilder'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  go-reconciled-tracing-autobuilder:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-    name: 'Go: Reconciled tracing with autobuilder'
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/autobuild
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
-          echo "Expected the Go autobuilder to be run, but the" \
-            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
-          exit 1
-        fi
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
-    env:
-      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
-      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-reconciled-tracing-custom-build-steps.yml

@@ -1,112 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: 'PR Check - Go: Reconciled tracing with custom build steps'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  go-reconciled-tracing-custom-build-steps:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
-    name: 'Go: Reconciled tracing with custom build steps'
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: go build main.go
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        # Once we start running Bash 4.2 in all environments, we can replace the
-        # `! -z` flag with the more elegant `-v` which confirms that the variable
-        # is actually unset and not potentially set to a blank value.
-        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
-          echo "Expected the Go autobuilder not to be run, but the" \
-            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
-          exit 1
-        fi
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
-    env:
-  # Enable reconciled Go tracing beta functionality
-      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-reconciled-tracing-legacy-workflow.yml

@@ -1,86 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: 'PR Check - Go: Reconciled tracing with legacy workflow'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  go-reconciled-tracing-legacy-workflow:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-    name: 'Go: Reconciled tracing with legacy workflow'
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/setup-go@v3
-      with:
-        go-version: ^1.13.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
-    env:
-  # Enable reconciled Go tracing beta functionality
-      CODEQL_ACTION_RECONCILE_GO_EXTRACTION: 'true'
-      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__go-tracing-autobuilder.yml

@@ -0,0 +1,126 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with autobuilder step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-tracing-autobuilder:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with autobuilder step'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+      - uses: ./../action/analyze
+      - run: |
+          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+            echo "Expected the Go autobuilder to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -0,0 +1,129 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with custom build steps'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-tracing-custom-build-steps:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with custom build steps'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: go build main.go
+      - uses: ./../action/analyze
+      - run: |
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -0,0 +1,120 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with legacy workflow'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  go-tracing-legacy-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with legacy workflow'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+      - run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: Manual Check - go
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    paths:
+      - .github/workflows/__go.yml
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+jobs:
+  go-custom-queries:
+    name: 'Go: Custom queries'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-custom-queries.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-indirect-tracing-workaround-diagnostic:
+    name: 'Go: diagnostic when Go is changed after init step'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-indirect-tracing-workaround-no-file-program:
+    name: 'Go: diagnostic when `file` is not installed'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-indirect-tracing-workaround:
+    name: 'Go: workaround for indirect tracing'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-indirect-tracing-workaround.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-tracing-autobuilder:
+    name: 'Go: tracing with autobuilder step'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-tracing-autobuilder.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-tracing-custom-build-steps:
+    name: 'Go: tracing with custom build steps'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-tracing-custom-build-steps.yml
+    with:
+      go-version: ${{ inputs.go-version }}
+  go-tracing-legacy-workflow:
+    name: 'Go: tracing with legacy workflow'
+    permissions:
+      contents: read
+      security-events: read
+    uses: ./.github/workflows/__go-tracing-legacy-workflow.yml
+    with:
+      go-version: ${{ inputs.go-version }}

.github/workflows/__init-with-registries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'
@@ -10,74 +10,113 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   init-with-registries:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Packaging: Download using registries'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      packages: read
+
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - name: Init with registries
-      uses: ./../action/init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        config-file: ./.github/codeql/codeql-config-registries.yml
-        languages: javascript
-        registries: |
-          - url: "https://ghcr.io/v2/"
-            packages: "*/*"
-            token: "${{ secrets.GITHUB_TOKEN }}"
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Init with registries
+        uses: ./../action/init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: ./.github/codeql/codeql-config-registries.yml
+          languages: javascript
+          registries: |
+            - url: "https://ghcr.io/v2/"
+              packages: "*/*"
+              token: "${{ secrets.GITHUB_TOKEN }}"
 
-      env:
-        TEST_MODE: true
-    - name: Verify packages installed
-      shell: bash
-      run: |
-        PRIVATE_PACK="$HOME/.codeql/packages/dsp-testing/private-pack"
-        CODEQL_PACK1="$HOME/.codeql/packages/dsp-testing/codeql-pack1"
+      - name: Verify packages installed
+        run: |
+          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
 
-        if [[ -d $PRIVATE_PACK ]]
-        then
-            echo "$PRIVATE_PACK was installed."
-        else
-            echo "::error $PRIVATE_PACK pack was not installed."
-            exit 1
-        fi
+          if [[ -d $PRIVATE_PACK ]]
+          then
+              echo "$PRIVATE_PACK was installed."
+          else
+              echo "::error $PRIVATE_PACK pack was not installed."
+              exit 1
+          fi
 
-        if [[ -d $CODEQL_PACK1 ]]
-        then
-            echo "$CODEQL_PACK1 was installed."
-        else
-            echo "::error $CODEQL_PACK1 pack was not installed."
-            exit 1
-        fi
+          if [[ -d $CODEQL_PACK1 ]]
+          then
+              echo "$CODEQL_PACK1 was installed."
+          else
+              echo "::error $CODEQL_PACK1 pack was not installed."
+              exit 1
+          fi
+
+      - name: Verify qlconfig.yml file was created
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+          if [[ -f $QLCONFIG_PATH ]]
+          then
+              echo "qlconfig.yml file was created."
+          else
+              echo "::error qlconfig.yml file was not created."
+              exit 1
+          fi
+
+      - name: Verify contents of qlconfig.yml
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+          if [[ $? -eq 0 ]]
+          then
+              echo "Registry was added to qlconfig.yml file."
+          else
+              echo "::error Registry was not added to qlconfig.yml file."
+              echo "Contents of qlconfig.yml file:"
+              cat $QLCONFIG_PATH
+              exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__javascript-source-root.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Custom source root
@@ -10,61 +10,73 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   javascript-source-root:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Custom source root
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - name: Move codeql-action
-      shell: bash
-      run: |
-        mkdir ../new-source-root
-        mv * ../new-source-root
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        source-root: ../new-source-root
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/analyze
-      with:
-        skip-queries: true
-        upload: false
-    - name: Assert database exists
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d javascript ]]; then
-          echo "Did not find a JavaScript database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Move codeql-action
+        run: |
+          mkdir ../new-source-root
+          mv * ../new-source-root
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          source-root: ../new-source-root
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+      - name: Assert database exists
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d javascript ]]; then
+            echo "Did not find a JavaScript database"
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,83 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Language aliases
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  language-aliases:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Language aliases
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: C#,java-kotlin,swift,typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check languages
+        run: |
+          expected_languages="csharp,java,swift,javascript"
+          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+
+          if [ "$expected_languages" != "$actual_languages" ]; then
+            echo "Resolved languages did not match expected list. " \
+              "Expected languages: $expected_languages. Actual languages: $actual_languages."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__local-bundle.yml

@@ -0,0 +1,86 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  local-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Local CodeQL bundle
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Fetch latest CodeQL bundle
+        run: |
+          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ml-powered-queries.yml

@@ -1,140 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - ML-powered queries
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  ml-powered-queries:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20220120
-        - os: macos-latest
-          version: stable-20220120
-        - os: windows-latest
-          version: stable-20220120
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
-    name: ML-powered queries
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        queries: security-extended
-        source-root: ./../action/tests/ml-powered-queries-repo
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-      env:
-        TEST_MODE: true
-
-    - name: Upload SARIF
-      uses: actions/upload-artifact@v3
-      with:
-        name: ml-powered-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-        path: ${{ runner.temp }}/results/javascript.sarif
-        retention-days: 7
-
-    - name: Check sarif
-      uses: ./../action/.github/check-sarif
-      if: matrix.os != 'windows-latest' || matrix.version == 'latest' || matrix.version
-        == 'nightly-latest'
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: js/ml-powered/nosql-injection,js/ml-powered/path-injection,js/ml-powered/sql-injection,js/ml-powered/xss
-        queries-not-run: foo,bar
-
-    - name: Check results
-    # Running ML-powered queries on Windows requires CodeQL CLI 2.9.0+. We don't run these checks
-    # against Windows and `cached` while CodeQL CLI 2.9.0 makes its way into `cached` to avoid the
-    # test starting to fail when the cached CodeQL Bundle gets updated. Once the CodeQL Bundle
-    # containing CodeQL CLI 2.9.0 has been fully released, we can drop this line and start running
-    # these checks on Windows and `cached`.
-      if: matrix.os != 'windows-latest' || matrix.version != 'cached'
-      env:
-      # Running on Windows requires CodeQL CLI 2.9.0+, which has so far only made it to 'latest'.
-        SHOULD_RUN_ML_POWERED_QUERIES: ${{ matrix.os != 'windows-latest' || matrix.version
-          == 'latest' || matrix.version == 'nightly-latest' }}
-      shell: bash
-      run: |
-        echo "Expecting ML-powered queries to be run: ${SHOULD_RUN_ML_POWERED_QUERIES}"
-
-        cd "$RUNNER_TEMP/results"
-        # We should run at least the ML-powered queries in `expected_rules`.
-        expected_rules="js/ml-powered/nosql-injection js/ml-powered/path-injection js/ml-powered/sql-injection js/ml-powered/xss"
-
-        for rule in ${expected_rules}; do
-          found_rule=$(jq --arg rule "${rule}" '[.runs[0].tool.extensions[].rules | select(. != null) |
-            flatten | .[].id] | any(. == $rule)' javascript.sarif)
-          echo "Did find rule '${rule}': ${found_rule}"
-          if [[ "${found_rule}" != "true" && "${SHOULD_RUN_ML_POWERED_QUERIES}" == "true" ]]; then
-            echo "Expected SARIF output to contain rule '${rule}', but found no such rule."
-            exit 1
-          elif [[ "${found_rule}" == "true" && "${SHOULD_RUN_ML_POWERED_QUERIES}" != "true" ]]; then
-            echo "Found rule '${rule}' in the SARIF output which shouldn't have been part of the analysis."
-            exit 1
-          fi
-        done
-
-        # We should have at least one alert from an ML-powered query.
-        num_alerts=$(jq '[.runs[0].results[] |
-          select(.properties.score != null and (.rule.id | startswith("js/ml-powered/")))] | length' \
-          javascript.sarif)
-        echo "Found ${num_alerts} alerts from ML-powered queries.";
-        if [[ "${num_alerts}" -eq 0 && "${SHOULD_RUN_ML_POWERED_QUERIES}" == "true" ]]; then
-          echo "Expected to find at least one alert from an ML-powered query but found ${num_alerts}."
-          exit 1
-        elif [[ "${num_alerts}" -ne 0 && "${SHOULD_RUN_ML_POWERED_QUERIES}" != "true" ]]; then
-          echo "Expected not to find any alerts from an ML-powered query but found ${num_alerts}."
-          exit 1
-        fi
-    env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__multi-language-autodetect.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
@@ -10,100 +10,166 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   multi-language-autodetect:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.22.4
+          - os: ubuntu-latest
+            version: stable-v2.22.4
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Multi-language repository
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      id: analysis
-      env:
-        TEST_MODE: true
-    - shell: bash
-      run: |
-        CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
-        if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for CPP, or created it in the wrong location."
-          exit 1
-        fi
-        CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
-        if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for C Sharp, or created it in the wrong location."
-          exit 1
-        fi
-        GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
-        if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Go, or created it in the wrong location."
-          exit 1
-        fi
-        JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
-        if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Java, or created it in the wrong location."
-          exit 1
-        fi
-        JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
-        if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Javascript, or created it in the wrong location."
-          exit 1
-        fi
-        PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
-        if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Python, or created it in the wrong location."
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Use Xcode 16
+        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
+        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby'
+            || '' }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Build code
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+
+      - name: Check language autodetect for all languages excluding Swift
+        run: |
+          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for CPP, or created it in the wrong location."
+            exit 1
+          fi
+          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for C Sharp, or created it in the wrong location."
+            exit 1
+          fi
+          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Go, or created it in the wrong location."
+            exit 1
+          fi
+          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Java, or created it in the wrong location."
+            exit 1
+          fi
+          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Javascript, or created it in the wrong location."
+            exit 1
+          fi
+          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Python, or created it in the wrong location."
+            exit 1
+          fi
+          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Ruby, or created it in the wrong location."
+            exit 1
+          fi
+
+      - name: Check language autodetect for Swift on macOS
+        if: runner.os == 'macOS'
+        run: |
+          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Swift, or created it in the wrong location."
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Overlay database init fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  overlay-init-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Overlay database init fallback
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: actions # Any language without overlay support will do
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases/actions"
+          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
+            echo "This test needs to be updated to use a non-overlay language."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
@@ -10,93 +10,110 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +dsp-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Install Node.js
+        uses: actions/setup-node@v5
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-    - name: Check results
-      uses: ./../action/.github/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
-      CODEQL_PASS_CONFIG_TO_CLI: true
-
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
@@ -10,91 +10,110 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Packaging: Config and input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +dsp-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Install Node.js
+        uses: actions/setup-node@v5
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-    - name: Check results
-      uses: ./../action/.github/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
@@ -10,90 +10,109 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Packaging: Config file'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging.yml
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Install Node.js
+        uses: actions/setup-node@v5
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging.yml
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-    - name: Check results
-      uses: ./../action/.github/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
@@ -10,91 +10,109 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Packaging: Action input'
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging2.yml
-        languages: javascript
-        packs: dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2, dsp-testing/codeql-pack3:other-query.ql
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Install Node.js
+        uses: actions/setup-node@v5
+        with:
+          node-version: 20.x
+          cache: npm
+      - name: Install dependencies
+        run: npm ci
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging2.yml
+          languages: javascript
+          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
 
-    - name: Check results
-      uses: ./../action/.github/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__quality-queries.yml

@@ -0,0 +1,139 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Quality queries input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  quality-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: linked
+            analysis-kinds: code-scanning,code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: nightly-latest
+            analysis-kinds: code-scanning,code-quality
+    name: Quality queries input
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/upload-artifact@v4
+        with:
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Upload quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/upload-artifact@v4
+        with:
+          name: |
+            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
+          path: ${{ runner.temp }}/results/javascript.quality.sarif
+          retention-days: 7
+      - name: Check quality query does not appear in security SARIF
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+          EXPECT_PRESENT: 'false'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+      - name: Check quality query appears in quality SARIF
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        uses: actions/github-script@v8
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
+          EXPECT_PRESENT: 'true'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+    env:
+      CHECK_SCRIPT: |
+        const fs = require('fs');
+
+        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
+        const run = sarif.runs[0];
+        const extensions = run.tool.extensions;
+
+        if (extensions === undefined) {
+          core.setFailed('`extensions` property not found in the SARIF run property bag.');
+        }
+
+        // ID of a query we want to check the presence for
+        const targetId = 'js/regex/always-matches';
+        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
+
+        if (found && expectPresent) {
+          console.log(`Found rule with id '${targetId}'.`);
+        } else if (!found && !expectPresent) {
+          console.log(`Rule with id '${targetId}' was not found.`);
+        } else {
+          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
+        }
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Remote config file
@@ -10,85 +10,76 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   remote-config:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Remote config file
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__resolve-environment-action.yml

@@ -0,0 +1,88 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Resolve environment
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  resolve-environment-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Resolve environment
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go,javascript-typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Resolve environment for Go
+        uses: ./../action/resolve-environment
+        id: resolve-environment-go
+        with:
+          language: go
+
+      - name: Fail if Go configuration missing
+        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+        run: exit 1
+
+      - name: Resolve environment for JavaScript/TypeScript
+        uses: ./../action/resolve-environment
+        id: resolve-environment-js
+        with:
+          language: javascript-typescript
+
+      - name: Fail if JavaScript/TypeScript configuration present
+        if:
+          fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
@@ -10,65 +10,67 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rubocop-multi-language:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
     name: RuboCop multi-language
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - name: Set up Ruby
-      uses: ruby/setup-ruby@v1
-      with:
-        ruby-version: 2.6
-    - name: Install Code Scanning integration
-      shell: bash
-      run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
-    - name: Install dependencies
-      shell: bash
-      run: bundle install
-    - name: RuboCop run
-      shell: bash
-      run: |
-        bash -c "
-          bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
-          [[ $? -ne 2 ]]
-        "
-    - uses: ./../action/upload-sarif
-      with:
-        sarif_file: rubocop.sarif
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@ab177d40ee5483edb974554986f56b33477e21d0 # v1.265.0
+        with:
+          ruby-version: 2.6
+      - name: Install Code Scanning integration
+        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+      - name: Install dependencies
+        run: bundle install
+      - name: RuboCop run
+        run: |
+          bash -c "
+            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+            [[ $? -ne 2 ]]
+          "
+      - uses: ./../action/upload-sarif
+        with:
+          sarif_file: rubocop.sarif
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ruby.yml

@@ -0,0 +1,84 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Ruby analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  ruby:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Ruby analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+          if [[ ! -d "$RUBY_DB" ]]; then
+            echo "Did not create a database for Ruby."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rust.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Rust analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  rust:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.3
+          - os: ubuntu-latest
+            version: stable-v2.22.1
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Rust analysis
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: rust
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
+          if [[ ! -d "$RUST_DB" ]]; then
+            echo "Did not create a database for Rust."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Split workflow
@@ -10,88 +10,112 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   split-workflow:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: Split workflow
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +dsp-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        skip-queries: true
-        output: ${{ runner.temp }}/results
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-    - name: Assert No Results
-      shell: bash
-      run: |
-        if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
-          echo "Expected results directory to be empty after skipping query execution!"
-          exit 1
-        fi
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-      env:
-        TEST_MODE: true
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+      - name: Assert No Results
+        run: |
+          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+            echo "Expected results directory to be empty after skipping query execution!"
+            exit 1
+          fi
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Assert Results
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__start-proxy.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Start proxy
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  start-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Start proxy
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Setup proxy for registries
+        id: proxy
+        uses: ./../action/start-proxy
+        with:
+          registry_secrets: '[{ "type": "nuget_feed", "url": "https://api.nuget.org/v3/index.json"
+            }]'
+
+      - name: Print proxy outputs
+        run: |
+          echo "${{ steps.proxy.outputs.proxy_host }}"
+          echo "${{ steps.proxy.outputs.proxy_port }}"
+          echo "${{ steps.proxy.outputs.proxy_urls }}"
+
+      - name: Fail if proxy outputs are not set
+        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port)
+          || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -0,0 +1,91 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Submit SARIF after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  submit-sarif-failure:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Submit SARIF after failure
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: write # needed to upload the SARIF file
+
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/checkout@v5
+      - uses: ./init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Fail
+    # We want this job to pass if the Action correctly uploads the SARIF file for
+    # the failed run.
+    # Setting this step to continue on error means that it is marked as completing
+    # successfully, so will not fail the job.
+        continue-on-error: true
+        run: exit 1
+      - uses: ./analyze
+    # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+    # above, we manually disable it with an `if` condition.
+        if: false
+        with:
+          category: /test-codeql-version:${{ matrix.version }}
+    env:
+  # Internal-only environment variable used to indicate that the post-init Action
+  # should expect to upload a SARIF file for the failed run.
+      CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+  # Make sure the uploading SARIF files feature is enabled.
+      CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+  # Upload the failed SARIF file as an integration test of the API endpoint.
+      CODEQL_ACTION_TEST_MODE: false
+  # Mark telemetry for this workflow so it can be treated separately.
+      CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
+

.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs: {}
+  workflow_call:
+    inputs: {}
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -0,0 +1,102 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Swift analysis using a custom build command
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  swift-custom-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: default
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using a custom build command
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Use Xcode 16
+        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
+        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check working directory
+        run: pwd
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-autobuild-working-dir.yml

@@ -1,69 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - Autobuild working directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  test-autobuild-working-dir:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: latest
-    name: Autobuild working directory
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - name: Test setup
-      shell: bash
-      run: |
-        # Make sure that Gradle build succeeds in autobuild-dir ...
-        cp -a ../action/tests/java-repo autobuild-dir
-        # ... and fails if attempted in the current directory
-        echo > build.gradle
-    - uses: ./../action/init
-      with:
-        languages: java
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/autobuild
-      with:
-        working-directory: autobuild-dir
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    - name: Check database
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d java ]]; then
-          echo "Did not find a Java database"
-          exit 1
-        fi
-    env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__test-local-codeql.yml

@@ -1,59 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - Local CodeQL bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  test-local-codeql:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: nightly-latest
-    name: Local CodeQL bundle
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - name: Fetch a CodeQL bundle
-      shell: bash
-      env:
-        CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
-      run: |
-        wget "$CODEQL_URL"
-    - uses: ./../action/init
-      with:
-        tools: ./codeql-bundle.tar.gz
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__test-proxy.yml

@@ -1,60 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - Proxy test
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  test-proxy:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: latest
-    name: Proxy test
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/analyze
-      env:
-        TEST_MODE: true
-    env:
-      https_proxy: http://squid-proxy:3128
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
-    container:
-      image: ubuntu:18.04
-      options: --dns 127.0.0.1
-    services:
-      squid-proxy:
-        image: datadog/squid:latest
-        ports:
-        - 3128:3128

.github/workflows/__test-ruby.yml

@@ -1,71 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
-# to regenerate this file.
-
-name: PR Check - Ruby analysis
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  test-ruby:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-    name: Ruby analysis
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        languages: ruby
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-      env:
-        TEST_MODE: true
-    - uses: ./../action/analyze
-      id: analysis
-      env:
-        TEST_MODE: true
-    - name: Check database
-      shell: bash
-      run: |
-        RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
-        if [[ ! -d "$RUBY_DB" ]]; then
-          echo "Did not create a database for Ruby."
-          exit 1
-        fi
-    env:
-      CODEQL_ENABLE_EXPERIMENTAL_FEATURES: 'true'
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/__unset-environment.yml

@@ -0,0 +1,126 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test unsetting environment variables
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  unset-environment:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Test unsetting environment variables
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - run: |
+          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+            exit 1
+          fi
+          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+            exit 1
+          fi
+          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+            echo "::error::Did not create a database for Go, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+            exit 1
+          fi
+          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+            echo "::error::Did not create a database for Java, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+            exit 1
+          fi
+          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+            exit 1
+          fi
+          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+            echo "::error::Did not create a database for Python, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
@@ -10,95 +10,83 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   upload-ref-sha-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-      env:
-        TEST_MODE: true
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-        upload: false
-      env:
-        TEST_MODE: true
-    - uses: ./../action/upload-sarif
-      with:
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-      env:
-        TEST_MODE: true
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-sarif.yml

@@ -0,0 +1,158 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Test different uses of `upload-sarif`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
+jobs:
+  upload-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-quality
+          - os: ubuntu-latest
+            version: default
+            analysis-kinds: code-scanning,code-quality
+    name: Test different uses of `upload-sarif`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: csharp,java,javascript,python
+          analysis-kinds: ${{ matrix.analysis-kinds }}
+      - name: Build code
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+          output: ${{ runner.temp }}/results
+
+      - name: |
+          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
+        uses: ./../action/upload-sarif
+        id: upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
+      - name: Fail for missing output from `upload-sarif` step for `code-scanning`
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Fail for missing output from `upload-sarif` step for `code-quality`
+        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Upload single SARIF file for Code Scanning
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-scanning
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
+      - name: Fail for missing output from `upload-single-sarif-code-scanning` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') &&
+          !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
+        run: exit 1
+      - name: Upload single SARIF file for Code Quality
+        uses: ./../action/upload-sarif
+        id: upload-single-sarif-code-quality
+        if: contains(matrix.analysis-kinds, 'code-quality')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
+      - name: Fail for missing output from `upload-single-sarif-code-quality` step
+        if: contains(matrix.analysis-kinds, 'code-quality') &&
+          !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
+        run: exit 1
+
+      - name: Change SARIF file extension
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
+      - name: Upload single non-`.sarif` file
+        uses: ./../action/upload-sarif
+        id: upload-single-non-sarif
+        if: contains(matrix.analysis-kinds, 'code-scanning')
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
+          category: |
+            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
+      - name: Fail for missing output from `upload-single-non-sarif` step
+        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pip install ruamel.yaml && python3 sync.py
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
@@ -10,139 +10,124 @@ env:
 on:
   push:
     branches:
-    - main
-    - releases/v1
-    - releases/v2
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+defaults:
+  run:
+    shell: bash
+concurrency:
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   with-checkout-path:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20210308
-        - os: macos-latest
-          version: stable-20210308
-        - os: windows-2019
-          version: stable-20210308
-        - os: ubuntu-latest
-          version: stable-20210319
-        - os: macos-latest
-          version: stable-20210319
-        - os: windows-2019
-          version: stable-20210319
-        - os: ubuntu-latest
-          version: stable-20210809
-        - os: macos-latest
-          version: stable-20210809
-        - os: windows-2019
-          version: stable-20210809
-        - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
-        - os: windows-2019
-          version: cached
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-2019
-          version: latest
-        - os: windows-2022
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-2019
-          version: nightly-latest
-        - os: windows-2022
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
     name: Use a custom `checkout_path`
+    if: github.triggering_actor != 'dependabot[bot]'
+    permissions:
+      contents: read
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Check out repository
-      uses: actions/checkout@v3
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/prepare-test
-      with:
-        version: ${{ matrix.version }}
-    - uses: actions/checkout@v3
-      with:
-        ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        path: x/y/z/some-path
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v6
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - name: Delete original checkout
+        run: |
+          # delete the original checkout so we don't accidentally use it.
+          # Actions does not support deleting the current working directory, so we
+          # delete the contents of the directory instead.
+          rm -rf ./* .github .git
+  # Check out the actions repo again, but at a different location.
+  # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+      - uses: actions/checkout@v5
+        with:
+          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          path: x/y/z/some-path
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
       # it's enough to test one compiled language and one interpreted language
-        languages: csharp,javascript
-        source-path: x/y/z/some-path/tests/multi-language-repo
-        debug: true
-      env:
-        TEST_MODE: true
-    - name: Build code (non-windows)
-      shell: bash
-      if: ${{ runner.os != 'Windows' }}
-      run: |
-        $CODEQL_RUNNER x/y/z/some-path/tests/multi-language-repo/build.sh
-    - name: Build code (windows)
-      shell: bash
-      if: ${{ runner.os == 'Windows' }}
-      run: |
-        x/y/z/some-path/tests/multi-language-repo/build.sh
-    - uses: ./../action/analyze
-      with:
-        checkout_path: x/y/z/some-path/tests/multi-language-repo
-        ref: v1.1.0
-        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        upload: false
-      env:
-        TEST_MODE: true
+          languages: csharp,javascript
+          source-root: x/y/z/some-path/tests/multi-language-repo
 
-    - uses: ./../action/upload-sarif
-      with:
-        ref: v1.1.0
-        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        checkout_path: x/y/z/some-path/tests/multi-language-repo
-      env:
-        TEST_MODE: true
+      - name: Build code
+        working-directory: x/y/z/some-path/tests/multi-language-repo
+        run: |
+          ./build.sh
 
-    - name: Verify SARIF after upload
-      shell: bash
-      run: |
-        EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
-        EXPECTED_REF="v1.1.0"
-        EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+      - uses: ./../action/analyze
+        with:
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
-        ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-        ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-        ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+      - name: Verify SARIF after upload
+        run: |
+          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
+          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+          EXPECTED_REF="v1.1.0"
+          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-        if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
-          echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
+          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
 
-        if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
-          echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
+          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
 
-        if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
-          echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
+          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
+
+          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+            echo "$PAYLOAD_FILE"
+            exit 1
+          fi
     env:
-      INTERNAL_CODEQL_ACTION_DEBUG_LOC: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/check-expected-release-files.yml

@@ -9,13 +9,20 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   check-expected-release-files:
     runs-on: ubuntu-latest
 
+    permissions:
+      contents: read
+
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v3
+        uses: actions/checkout@v5
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -2,25 +2,37 @@ name: "CodeQL action"
 
 on:
   push:
-    branches: [main, releases/v1, releases/v2]
+    branches: [main, releases/v*]
   pull_request:
-    branches: [main, releases/v1, releases/v2]
+    branches: [main, releases/v*]
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
+  schedule:
+    # Weekly on Sunday.
+    - cron: '30 1 * * 0'
+  workflow_dispatch:
+
+defaults:
+  run:
+    shell: bash
+
+env:
+  CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
 jobs:
   # Identify the CodeQL tool versions to use in the analysis job.
   check-codeql-versions:
+    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
     outputs:
       versions: ${{ steps.compare.outputs.versions }}
 
     permissions:
-      security-events: write
+      contents: read
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v5
     - name: Init with default CodeQL bundle from the VM image
       id: init-default
       uses: ./init
@@ -34,7 +46,7 @@ jobs:
       id: init-latest
       uses: ./init
       with:
-        tools: latest
+        tools: linked
         languages: javascript
     - name: Compare default and latest CodeQL bundle versions
       id: compare
@@ -47,42 +59,88 @@ jobs:
         echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
         echo "Latest CodeQL bundle version is $CODEQL_VERSION_LATEST"
 
-        # If we're running on a pull request, run with both bundles, even if `tools: latest` would
+        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
         # be the same as `tools: null`. This allows us to make the job for each of the bundles a
         # required status check.
         #
-        # If we're running on push, then we can skip running with `tools: latest` when it would be
+        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
         # the same as running with `tools: null`.
         if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LATEST" ]]; then
           VERSIONS_JSON='[null]'
         else
-          VERSIONS_JSON='[null, "latest"]'
+          VERSIONS_JSON='[null, "linked"]'
         fi
 
         # Output a JSON-encoded list with the distinct versions to test against.
         echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
-        echo "::set-output name=versions::${VERSIONS_JSON}"
+        echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
-  build:
+  analyze-javascript:
+    if: github.triggering_actor != 'dependabot[bot]'
     needs: [check-codeql-versions]
     strategy:
+      fail-fast: false
       matrix:
-        os: [ubuntu-latest,windows-latest,macos-latest]
+        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-13,macos-14,macos-15]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
     permissions:
+      contents: read
       security-events: write
 
     steps:
-    - uses: actions/checkout@v3
-    - uses: ./init
+    - name: Checkout
+      uses: actions/checkout@v5
+    - name: Initialize CodeQL
+      uses: ./init
       id: init
       with:
         languages: javascript
-        config-file: ./.github/codeql/codeql-config.yml
+        config-file: ./.github/codeql/codeql-config-javascript.yml
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: ${{steps.init.outputs.codeql-path}} version --format=json
-    - uses: ./analyze
+      run: >
+        "$CODEQL" version --format=json
+      env:
+        CODEQL: ${{steps.init.outputs.codeql-path}}
+    - name: Perform CodeQL Analysis
+      uses: ./analyze
+      with:
+        category: "/language:javascript"
+        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && 'always') || 'never' }}
+
+  analyze-other:
+    if: github.triggering_actor != 'dependabot[bot]'
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - language: actions
+          - language: python
+
+    permissions:
+      contents: read
+      security-events: write
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v5
+    - name: Initialize CodeQL
+      uses: ./init
+      with:
+        languages: ${{ matrix.language }}
+        build-mode: none
+        config: >
+          paths-ignore:
+            - lib
+            - tests
+          queries:
+            - uses: security-and-quality
+    - name: Perform CodeQL Analysis
+      uses: ./analyze
+      with:
+        category: "/language:${{ matrix.language }}"

.github/workflows/codescanning-config-cli.yml

@@ -3,42 +3,49 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  CODEQL_PASS_CONFIG_TO_CLI: true
+  # Diff informed queries add an additional query filter which is not yet
+  # taken into account by these tests.
+  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
 
 on:
   push:
     branches:
     - main
-    - releases/v1
-    - releases/v2
+    - releases/v*
   pull_request:
     types:
     - opened
     - synchronize
     - reopened
     - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 
+defaults:
+  run:
+    shell: bash
+
 jobs:
   code-scanning-config-tests:
+    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
+    permissions:
+      contents: read
+      packages: read
+      security-events: read
+
     strategy:
-      fail-fast: true
+      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
+          version: linked
         - os: ubuntu-latest
-          version: cached
-        - os: macos-latest
-          version: cached
+          version: default
         - os: ubuntu-latest
           version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -46,15 +53,25 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v5
+
+    - name: Set up Node.js
+      uses: actions/setup-node@v5
+      with:
+        node-version: 24
+        cache: 'npm'
+
+    - name: Install dependencies
+      run: npm ci
+
     - name: Prepare test
       id: prepare-test
-      uses: ./.github/prepare-test
+      uses: ./.github/actions/prepare-test
       with:
         version: ${{ matrix.version }}
 
     - name: Empty file
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: "{}"
         languages: javascript
@@ -62,31 +79,31 @@ jobs:
 
     - name: Packs from input
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
-            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
           }
         languages: javascript
-        packs: dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
     - name: Packs from input with +
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
-            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
           }
         languages: javascript
-        packs: + dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        packs: + codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
     - name: Queries from input
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
@@ -98,7 +115,7 @@ jobs:
 
     - name: Queries from input with +
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
@@ -110,27 +127,27 @@ jobs:
 
     - name: Queries and packs from input with +
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
             "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }],
-            "packs": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
-        packs: + dsp-testing/codeql-pack1@1.0.0, dsp-testing/codeql-pack2
+        packs: + codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
     - name: Queries and packs from config
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
             "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }],
             "packs": {
-              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ]
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
             }
           }
         languages: javascript
@@ -139,7 +156,7 @@ jobs:
 
     - name: Queries and packs from config overriden by input
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
@@ -154,17 +171,17 @@ jobs:
 
     - name: Queries and packs from config merging with input
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
-            ],
             "packs": {
-              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2", "codeql/javascript-queries" ]
-            }
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
+            },
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
+            ]
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
@@ -174,12 +191,12 @@ jobs:
 
     - name: Multi-language packs from config
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
             "packs": {
-              "javascript": ["dsp-testing/codeql-pack1@1.0.0", "dsp-testing/codeql-pack2" ],
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ],
               "ruby": ["codeql/ruby-queries"]
             },
             "queries": [
@@ -192,7 +209,7 @@ jobs:
 
     - name: Other config properties
       if: success() || failure()
-      uses: ./../action/.github/check-codescanning-config
+      uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: |
           {
@@ -206,15 +223,3 @@ jobs:
         packs: + codeql/javascript-queries
         config-file-test: .github/codeql/other-config-properties.yml
         tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-    - name: Config not generated when env var is not set
-      if: success() || failure()
-      env:
-        CODEQL_PASS_CONFIG_TO_CLI: false
-      uses: ./../action/.github/check-codescanning-config
-      with:
-        expected-config-file-contents: ""
-        languages: javascript
-        packs: + codeql/javascript-queries
-        config-file-test: .github/codeql/other-config-properties.yml
-        tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/debug-artifacts-failure-safe.yml

@@ -0,0 +1,107 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
+jobs:
+  upload-artifacts:
+    if: github.triggering_actor != 'dependabot[bot]'
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    permissions:
+      contents: read
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v6
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        env:
+          # Forces a failure in this step.
+          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
+        with:
+          expect-error: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    if: github.triggering_actor != 'dependabot[bot]'
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v5
+      - name: Check expected artifacts exist
+        run: |
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            echo "Artifacts from version $version:"
+            pushd "./my-debug-artifacts-${version//./}"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+                echo "Missing a partial database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "log" ]] ; then
+                echo "Missing database initialization logs"
+                exit 1
+              fi
+              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts-failure.yml

@@ -1,90 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist
-# when the analyze step fails.
-name: PR Check - Debug artifacts after failure
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    strategy:
-      matrix:
-        os: [ubuntu-latest, macos-latest]
-    name: Upload debug artifacts after failure in analyze
-    continue-on-error: true
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Dump GitHub event
-        run: cat "${GITHUB_EVENT_PATH}"
-      - name: Check out repository
-        uses: actions/checkout@v3
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/prepare-test
-        with:
-          version: latest
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-        env:
-          TEST_MODE: true
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis  
-        with:
-          expect-error: true
-          ram: 1
-        env:
-          TEST_MODE: true
-  download-and-check-artifacts:
-    name: Download and check debug artifacts after failure in analyze
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v3
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for os in $OPERATING_SYSTEMS; do
-            pushd "./my-debug-artifacts-$os"
-            echo "Artifacts from run on $os:"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
-                echo "Missing a partial database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "log" ]] ; then
-                echo "Missing database initialization logs"
-                exit 1
-              fi
-              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          INTERNAL_CODEQL_ACTION_DEBUG_LOC: true

.github/workflows/debug-artifacts-safe.yml

@@ -0,0 +1,102 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+defaults:
+  run:
+    shell: bash
+
+jobs:
+  upload-artifacts:
+    if: github.triggering_actor != 'dependabot[bot]'
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v6
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby
+      - name: Build code
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    if: github.triggering_actor != 'dependabot[bot]'
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v5
+      - name: Check expected artifacts exist
+        run: |
+          VERSIONS="stable-v2.20.3 default linked nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -1,87 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist.
-name: PR Check - Debug artifact upload
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v1
-    - releases/v2
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    strategy:
-      matrix:
-        os: [ubuntu-latest, macos-latest]
-        version: [stable-20210308, stable-20210319, stable-20210809, cached, latest, nightly-latest]
-    name: Upload debug artifacts
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v3
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-        env:
-          TEST_MODE: true
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis  
-        env:
-          TEST_MODE: true
-  download-and-check-artifacts:
-    name: Download and check debug artifacts
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v3
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
-          VERSIONS="stable-20210308 stable-20210319 stable-20210809 cached latest nightly-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for os in $OPERATING_SYSTEMS; do
-            for version in $VERSIONS; do
-              pushd "./my-debug-artifacts-$os-$version"
-              echo "Artifacts from version $version on $os:"
-              for language in $LANGUAGES; do
-                echo "- Checking $language"
-                if [[ ! -f "$language.sarif" ]] ; then
-                  echo "Missing a SARIF file for $language"
-                  exit 1
-                fi
-                if [[ ! -f "my-db-$language.zip" ]] ; then
-                  echo "Missing a database bundle for $language"
-                  exit 1
-                fi
-                if [[ ! -d "$language/log" ]] ; then
-                  echo "Missing logs for $language"
-                  exit 1
-                fi
-              done
-              popd
-            done
-          done
-        env:
-          INTERNAL_CODEQL_ACTION_DEBUG_LOC: true