Merge pull request #2550 from github/henrymercer/fix-ff-name

Fix name of Python stdlib extraction feature flag

.eslintignore

@@ -1,4 +0,0 @@
-**/webpack.config.js
-lib/**
-src/testdata/**
-tests/**

.eslintrc.json

@@ -1,77 +0,0 @@
-
-{
-    "parser": "@typescript-eslint/parser",
-    "parserOptions": {
-        "project": "./tsconfig.json"
-    },
-    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
-    "extends": [
-        "eslint:recommended",
-        "plugin:@typescript-eslint/recommended",
-        "plugin:@typescript-eslint/recommended-requiring-type-checking",
-        "plugin:github/recommended",
-        "plugin:github/typescript",
-        "plugin:import/typescript"
-    ],
-    "rules": {
-        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
-        "i18n-text/no-en": "off",
-        "import/extensions": ["error", {
-            // Allow importing JSON files
-            "json": {}
-        }],
-        "import/no-amd": "error",
-        "import/no-commonjs": "error",
-        "import/no-cycle": "error",
-        "import/no-dynamic-require": "error",
-        // Disable the rule that checks that devDependencies aren't imported since we use a single
-        // linting configuration file for both source and test code.
-        "import/no-extraneous-dependencies": ["error", {"devDependencies": true}],
-        "import/no-namespace": "off",
-        "import/no-unresolved": "error",
-        "import/no-webpack-loader-syntax": "error",
-        "import/order": ["error", {
-            "alphabetize": {"order": "asc"},
-            "newlines-between": "always"
-        }],
-        "max-len": ["error", {
-            "code": 120,
-            "ignoreUrls": true,
-            "ignoreStrings": true,
-            "ignoreTemplateLiterals": true
-        }],
-        "no-async-foreach/no-async-foreach": "error",
-        "no-console": "off",
-        "no-sequences": "error",
-        "no-shadow": "off",
-        "@typescript-eslint/no-shadow": ["error"],
-        "one-var": ["error", "never"]
-    },
-    "overrides": [{
-        // "temporarily downgraded during transition to eslint
-        "files": "**",
-        "rules": {
-            "@typescript-eslint/ban-types": "off",
-            "@typescript-eslint/explicit-module-boundary-types": "off",
-            "@typescript-eslint/no-explicit-any": "off",
-            "@typescript-eslint/no-unsafe-assignment": "off",
-            "@typescript-eslint/no-unsafe-call": "off",
-            "@typescript-eslint/no-unsafe-member-access": "off",
-            "@typescript-eslint/no-unsafe-return": "off",
-            "@typescript-eslint/no-var-requires": "off",
-            "@typescript-eslint/prefer-regexp-exec": "off",
-            "@typescript-eslint/require-await": "off",
-            "@typescript-eslint/restrict-template-expressions": "off",
-            "func-style": "off",
-            "sort-imports": "off"
-        }
-    }],
-    "settings": {
-        "import/resolver": {
-            "node": {
-                "moduleDirectory": ["node_modules", "src"]
-            },
-            "typescript": {}
-        }
-    }
-}

.github/actions/check-codescanning-config/action.yml

@@ -29,7 +29,16 @@ inputs:
   tools:
     required: true
     description: |
-      The url of codeql to use.
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
 
 runs:
   using: composite

.github/actions/prepare-test/action.yml

@@ -2,12 +2,16 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'latest', 'default', 'nightly-latest', 'nightly-YYYY-MM-DD', or 'stable-YYYY-MM-DD'."
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
     default: 'false'
     required: false
+  setup-kotlin:
+    description: "If true, we setup kotlin"
+    default: 'true'
+    required: true
 outputs:
   tools-url:
     description: "The value that should be passed as the 'tools' input of the 'init' step."
@@ -28,14 +32,28 @@ runs:
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
+        if [[ ${{ inputs.version }} == "linked" ]]; then
+          echo "tools-url=linked" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ ${{ inputs.version }} == "default" ]]; then
+          echo "tools-url=" >> "$GITHUB_OUTPUT"
+          exit 0
+        fi
+
+        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
+          extension="tar.zst"
+        else
+          extension="tar.gz"
+        fi
+
         if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
-          artifact_name="codeql-bundle.tar.gz"
+          artifact_name="codeql-bundle.$extension"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
-          artifact_name="codeql-bundle-linux64.tar.gz"
+          artifact_name="codeql-bundle-linux64.$extension"
         elif [[ "$RUNNER_OS" == "macOS" ]]; then
-          artifact_name="codeql-bundle-osx64.tar.gz"
+          artifact_name="codeql-bundle-osx64.$extension"
         elif [[ "$RUNNER_OS" == "Windows" ]]; then
-          artifact_name="codeql-bundle-win64.tar.gz"
+          artifact_name="codeql-bundle-win64.$extension"
         else
           echo "::error::Unrecognized OS $RUNNER_OS"
           exit 1
@@ -46,15 +64,16 @@ runs:
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
           version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
-          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version-manual/$artifact_name" >> $GITHUB_OUTPUT
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ ${{ inputs.version }} == *"stable"* ]]; then
           version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == "latest" ]]; then
-          echo "tools-url=latest" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == "default" ]]; then
-          echo "tools-url=" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"
           exit 1
         fi
+
+    - uses: fwilhe2/setup-kotlin@9c245a6425255f5e98ba1ce6c15d31fce7eca9da
+      if: ${{ inputs.setup-kotlin == 'true' }}
+      with:
+        version: 1.8.21

.github/actions/query-filter-test/action.yml

@@ -23,7 +23,16 @@ inputs:
   tools:
     required: true
     description: |
-      The url of codeql to use.
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
 
 runs:
   using: composite
@@ -39,7 +48,6 @@ runs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
-        upload-database: false
         upload: never
       env:
         CODEQL_ACTION_TEST_MODE: "true"

.github/actions/release-initialise/action.yml

@@ -18,12 +18,12 @@ runs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: 3.8
+        python-version: 3.12
 
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install PyGithub==1.55 requests
+        pip install PyGithub==2.3.0 requests
       shell: bash
 
     - name: Update git config

.github/actions/setup-swift/action.yml

@@ -11,7 +11,7 @@ runs:
       id: get_swift_version
       if: runner.os == 'Linux'
       shell: bash
-      env: 
+      env:
         CODEQL_PATH: ${{ inputs.codeql-path }}
       run: |
         SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
@@ -19,7 +19,7 @@ runs:
           VERSION="null"
         else
           VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
-          # Specify 5.x.0, otherwise setup Action will default to latest minor version. 
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version.
           if [ $VERSION = "5.7" ]; then
             VERSION="5.7.0"
           elif [ $VERSION = "5.8" ]; then
@@ -29,11 +29,11 @@ runs:
           # setup-swift does not yet support v5.9.1 Remove this when it does.
           elif [ $VERSION = "5.9.1" ]; then
             VERSION="5.9.0"
-          fi 
+          fi
         fi
         echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
 
-    - uses: redsun82/setup-swift@b2b6f77ab14f6a9b136b520dc53ec8eca27d2b99 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+    - uses: redsun82/setup-swift@362f49f31da2f5f4f851657046bdd1290d03edc8 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
       if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
       with:
         swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/dependabot.yml

@@ -16,6 +16,10 @@ updates:
       # v7 requires ESM
       - dependency-name: "del"
         versions: ["^7.0.0"]
+      # This is broken due to the way configuration files have changed. 
+      # This might be fixed when we move to eslint v9.
+      - dependency-name: "eslint-plugin-import"
+        versions: [">=2.30.0"]
     groups:
       npm:
         patterns:

.github/update-release-branch.py

@@ -1,5 +1,6 @@
 import argparse
 import datetime
+import fileinput
 import re
 from github import Github
 import json
@@ -171,6 +172,19 @@ def get_current_version():
   with open('package.json', 'r') as f:
     return json.load(f)['version']
 
+# `npm version` doesn't always work because of merge conflicts, so we
+# replace the version in package.json textually.
+def replace_version_package_json(prev_version, new_version):
+  prev_line_is_codeql = False
+  for line in fileinput.input('package.json', inplace = True, encoding='utf-8'):
+    if prev_line_is_codeql and f'\"version\": \"{prev_version}\"' in line:
+      print(line.replace(prev_version, new_version), end='')
+    else:
+      prev_line_is_codeql = False
+      print(line, end='') 
+    if '\"name\": \"codeql\",' in line:
+        prev_line_is_codeql = True 
+
 def get_today_string():
   today = datetime.datetime.today()
   return '{:%d %b %Y}'.format(today)
@@ -374,9 +388,9 @@ def main():
       run_git('commit', '--no-edit')
 
     # Migrate the package version number from a vLatest version number to a vOlder version number
-    print(f'Setting version number to {version}')
-    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
-    run_git('add', 'package.json', 'package-lock.json')
+    print(f'Setting version number to {version} in package.json')
+    replace_version_package_json(get_current_version(), version) # We rely on the `Update dependencies` workflow to update package-lock.json
+    run_git('add', 'package.json')
 
     # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
     print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')

.github/workflows/__all-platform-bundle.yml

@@ -7,7 +7,6 @@ name: PR Check - All-platform bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   all-platform-bundle:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,18 +49,16 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
       - id: init
         uses: ./../action/init
         with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
         shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
-        with:
-          upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -7,7 +7,6 @@ name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   analyze-ref-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -71,7 +65,6 @@ jobs:
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          upload-database: false
           ref: refs/heads/main
           sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:

.github/workflows/__autobuild-action.yml

@@ -7,7 +7,6 @@ name: PR Check - autobuild-action
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   autobuild-action:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
     name: autobuild-action
     permissions:
       contents: read
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: csharp
@@ -74,8 +68,6 @@ jobs:
           CORECLR_PROFILER: ''
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - name: Check database
         shell: bash
         run: |

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing.yml

@@ -7,7 +7,6 @@ name: PR Check - Autobuild direct tracing
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,12 +24,13 @@ on:
 jobs:
   autobuild-direct-tracing:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: windows-latest
@@ -44,14 +44,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -62,6 +55,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Set up Java test repo configuration
         shell: bash
         run: |

.github/workflows/__build-mode-autobuild.yml

@@ -7,7 +7,6 @@ name: PR Check - Build mode autobuild
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   build-mode-autobuild:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/

.github/workflows/__build-mode-manual.yml

@@ -7,7 +7,6 @@ name: PR Check - Build mode manual
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   build-mode-manual:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
@@ -73,10 +67,6 @@ jobs:
             exit 1
           fi
 
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
-
       - name: Build code
         shell: bash
         run: ./build.sh

.github/workflows/__build-mode-none.yml

@@ -7,7 +7,6 @@ name: PR Check - Build mode none
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   build-mode-none:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode none
@@ -40,14 +40,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -58,6 +51,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__build-mode-rollback.yml

@@ -7,7 +7,6 @@ name: PR Check - Build mode rollback
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   build-mode-rollback:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -7,7 +7,6 @@ name: PR Check - Config export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   config-export:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -48,14 +48,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -66,6 +59,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: javascript

.github/workflows/__config-input.yml

@@ -7,7 +7,6 @@ name: PR Check - Config input
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   config-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
     name: Config input
     permissions:
       contents: read
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Copy queries into workspace
         run: |
           cp -a ../action/queries .

.github/workflows/__cpp-deptrace-disabled.yml

@@ -7,7 +7,6 @@ name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   cpp-deptrace-disabled:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Test setup
         shell: bash
         run: |

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -7,7 +7,6 @@ name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: macos-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Test setup
         shell: bash
         run: |

.github/workflows/__cpp-deptrace-enabled.yml

@@ -7,7 +7,6 @@ name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   cpp-deptrace-enabled:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Test setup
         shell: bash
         run: |

.github/workflows/__diagnostics-export.yml

@@ -7,7 +7,6 @@ name: PR Check - Diagnostic export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,20 +24,15 @@ on:
 jobs:
   diagnostics-export:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-20230403
+            version: linked
           - os: macos-latest
-            version: stable-20230403
+            version: linked
           - os: windows-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: latest
-          - os: macos-latest
-            version: latest
-          - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -54,14 +48,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -72,6 +59,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
@@ -82,17 +70,13 @@ jobs:
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |
-          for i in {1..2}; do
-            # Use the same location twice to test the workaround for the bug in CodeQL CLI 2.12.6 that
-            # produces an invalid diagnostic with multiple identical location objects.
-            "$CODEQL_PATH" database add-diagnostic \
-              "$RUNNER_TEMP/codeql_databases/javascript" \
-              --file-path /path/to/file \
-              --plaintext-message "Plaintext message $i" \
-              --source-id "lang/diagnostics/example" \
-              --source-name "Diagnostic name" \
-              --ready-for-status-page
-          done
+          "$CODEQL_PATH" database add-diagnostic \
+            "$RUNNER_TEMP/codeql_databases/javascript" \
+            --file-path /path/to/file \
+            --plaintext-message "Plaintext message" \
+            --source-id "lang/diagnostics/example" \
+            --source-name "Diagnostic name" \
+            --ready-for-status-page
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
@@ -112,7 +96,7 @@ jobs:
             const fs = require('fs');
 
             function checkStatusPageNotification(n) {
-              const expectedMessage = 'Plaintext message 1\n\nCodeQL also found 1 other diagnostic like this. See the workflow log for details.';
+              const expectedMessage = 'Plaintext message';
               if (n.message.text !== expectedMessage) {
                 core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
               }

.github/workflows/__export-file-baseline-information.yml

@@ -7,7 +7,6 @@ name: PR Check - Export file baseline information
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   export-file-baseline-information:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
@@ -85,7 +79,7 @@ jobs:
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-          if [[ $RUNNER_OS != "Windows" ]]; then
+          if [[ $RUNNER_OS == "macOS" ]]; then
             expected_baseline_languages+=" swift"
           fi
 

.github/workflows/__extractor-ram-threads.yml

@@ -7,7 +7,6 @@ name: PR Check - Extractor ram and threads options test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   extractor-ram-threads:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
     name: Extractor ram and threads options test
     permissions:
       contents: read
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: java

.github/workflows/__go-custom-queries.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: Custom queries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,55 +24,12 @@ on:
 jobs:
   go-custom-queries:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: windows-latest
-            version: stable-20230403
+            version: linked
           - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
-          - os: windows-latest
-            version: stable-v2.13.5
-          - os: ubuntu-latest
-            version: stable-v2.14.6
-          - os: macos-latest
-            version: stable-v2.14.6
-          - os: windows-latest
-            version: stable-v2.14.6
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: windows-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
-          - os: windows-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
-          - os: ubuntu-latest
-            version: latest
-          - os: macos-latest
-            version: latest
-          - os: windows-latest
-            version: latest
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
             version: nightly-latest
     name: 'Go: Custom queries'
     permissions:
@@ -84,14 +40,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -102,6 +51,10 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
@@ -111,8 +64,6 @@ jobs:
         shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
-        with:
-          upload-database: false
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: diagnostic when Go is changed after init step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
       # We need a Go version that ships with statically linked binaries on Linux

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: diagnostic when `file` is not installed'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
       # We need a Go version that ships with statically linked binaries on Linux

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: workaround for indirect tracing'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   go-indirect-tracing-workaround:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
       # We need a Go version that ships with statically linked binaries on Linux
@@ -68,8 +62,6 @@ jobs:
         shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - shell: bash
         run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then

.github/workflows/__go-tracing-autobuilder.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: tracing with autobuilder step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,19 +24,12 @@ on:
 jobs:
   go-tracing-autobuilder:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
           - os: ubuntu-latest
             version: stable-v2.14.6
-          - os: macos-latest
+          - os: macos-12
             version: stable-v2.14.6
           - os: ubuntu-latest
             version: stable-v2.15.5
@@ -47,14 +39,22 @@ jobs:
             version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -68,14 +68,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -86,9 +79,10 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
-          go-version: ~1.22.0
+          go-version: ~1.23.0
       # to avoid potentially misleading autobuilder results where we expect it to download
       # dependencies successfully, but they actually come from a warm cache
           cache: false
@@ -98,8 +92,6 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - shell: bash
         run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: tracing with custom build steps'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,19 +24,12 @@ on:
 jobs:
   go-tracing-custom-build-steps:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
           - os: ubuntu-latest
             version: stable-v2.14.6
-          - os: macos-latest
+          - os: macos-12
             version: stable-v2.14.6
           - os: ubuntu-latest
             version: stable-v2.15.5
@@ -47,14 +39,22 @@ jobs:
             version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -68,14 +68,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -86,9 +79,10 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
-          go-version: ~1.22.0
+          go-version: ~1.23.0
       # to avoid potentially misleading autobuilder results where we expect it to download
       # dependencies successfully, but they actually come from a warm cache
           cache: false
@@ -100,8 +94,6 @@ jobs:
         shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - shell: bash
         run: |
           # Once we start running Bash 4.2 in all environments, we can replace the

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Go: tracing with legacy workflow'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,19 +24,12 @@ on:
 jobs:
   go-tracing-legacy-workflow:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
           - os: ubuntu-latest
             version: stable-v2.14.6
-          - os: macos-latest
+          - os: macos-12
             version: stable-v2.14.6
           - os: ubuntu-latest
             version: stable-v2.15.5
@@ -47,14 +39,22 @@ jobs:
             version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -68,14 +68,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -86,9 +79,10 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/setup-go@v5
         with:
-          go-version: ~1.22.0
+          go-version: ~1.23.0
       # to avoid potentially misleading autobuilder results where we expect it to download
       # dependencies successfully, but they actually come from a warm cache
           cache: false
@@ -97,8 +91,6 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"

.github/workflows/__init-with-registries.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Packaging: Download using registries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   init-with-registries:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -34,11 +34,11 @@ jobs:
           - os: windows-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -55,14 +55,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -73,6 +66,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Init with registries
         uses: ./../action/init
         with:

.github/workflows/__javascript-source-root.yml

@@ -7,7 +7,6 @@ name: PR Check - Custom source root
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   javascript-source-root:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Move codeql-action
         shell: bash
         run: |
@@ -72,9 +66,7 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
-          upload-database: false
           skip-queries: true
-          upload: never
       - name: Assert database exists
         shell: bash
         run: |

.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v3
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -7,7 +7,6 @@ name: PR Check - Language aliases
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   language-aliases:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
     name: Language aliases
     permissions:
       contents: read
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: C#,java-kotlin,swift,typescript

.github/workflows/__multi-language-autodetect.yml

@@ -7,7 +7,6 @@ name: PR Check - Multi-language repository
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,39 +24,40 @@ on:
 jobs:
   multi-language-autodetect:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.14.6
           - os: ubuntu-latest
             version: stable-v2.14.6
           - os: macos-latest
-            version: stable-v2.14.6
+            version: stable-v2.15.5
           - os: ubuntu-latest
             version: stable-v2.15.5
           - os: macos-latest
-            version: stable-v2.15.5
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.16.6
           - os: macos-latest
-            version: stable-v2.16.6
+            version: stable-v2.17.6
           - os: ubuntu-latest
-            version: default
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.18.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: default
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
             version: nightly-latest
-          - os: macos-latest
+          - os: ubuntu-latest
             version: nightly-latest
     name: Multi-language repository
     permissions:
@@ -68,14 +68,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -86,13 +79,22 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+
       - uses: ./../action/init
         id: init
         with:
           db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby'
+            || '' }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
         with:
           codeql-path: ${{ steps.init.outputs.codeql-path }}
 
@@ -144,8 +146,8 @@ jobs:
             exit 1
           fi
 
-      - name: Check language autodetect for Swift
-        if: runner.os != 'Windows' && matrix.version != 'stable-20230403'
+      - name: Check language autodetect for Swift on MacOS
+        if: runner.os == 'macOS'
         shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Packaging: Config and input passed to the CLI'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -54,14 +54,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -72,6 +65,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-inputs-js.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Packaging: Config and input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   packaging-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -54,14 +54,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -72,6 +65,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-js.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Packaging: Config file'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   packaging-config-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -54,14 +54,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -72,6 +65,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging.yml

.github/workflows/__packaging-inputs-js.yml

@@ -7,7 +7,6 @@ name: 'PR Check - Packaging: Action input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   packaging-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -54,14 +54,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -72,6 +65,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging2.yml

.github/workflows/__remote-config.yml

@@ -7,7 +7,6 @@ name: PR Check - Remote config file
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,55 +24,12 @@ on:
 jobs:
   remote-config:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: windows-latest
-            version: stable-20230403
+            version: linked
           - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
-          - os: windows-latest
-            version: stable-v2.13.5
-          - os: ubuntu-latest
-            version: stable-v2.14.6
-          - os: macos-latest
-            version: stable-v2.14.6
-          - os: windows-latest
-            version: stable-v2.14.6
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: windows-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
-          - os: windows-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: windows-latest
-            version: default
-          - os: ubuntu-latest
-            version: latest
-          - os: macos-latest
-            version: latest
-          - os: windows-latest
-            version: latest
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
             version: nightly-latest
     name: Remote config file
     permissions:
@@ -84,14 +40,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -102,6 +51,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__resolve-environment-action.yml

@@ -7,7 +7,6 @@ name: PR Check - Resolve environment
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,9 @@ on:
 jobs:
   resolve-environment-action:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.13.4
-          - os: macos-latest
-            version: stable-v2.13.4
-          - os: windows-latest
-            version: stable-v2.13.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -40,11 +34,11 @@ jobs:
           - os: windows-latest
             version: default
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
@@ -60,14 +54,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -78,10 +65,10 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          languages: ${{ matrix.version == 'stable-v2.13.4' && 'go' || 'go,javascript-typescript'
-            }}
+          languages: go,javascript-typescript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - name: Resolve environment for Go
@@ -95,14 +82,13 @@ jobs:
         run: exit 1
 
       - name: Resolve environment for JavaScript/TypeScript
-        if: matrix.version != 'stable-v2.13.4'
         uses: ./../action/resolve-environment
         id: resolve-environment-js
         with:
           language: javascript-typescript
 
       - name: Fail if JavaScript/TypeScript configuration present
-        if: matrix.version != 'stable-v2.13.4' && 
+        if: 
           fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
         run: exit 1
     env:

.github/workflows/__rubocop-multi-language.yml

@@ -7,7 +7,6 @@ name: PR Check - RuboCop multi-language
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   rubocop-multi-language:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Set up Ruby
         uses: ruby/setup-ruby@v1
         with:

.github/workflows/__ruby.yml

@@ -7,7 +7,6 @@ name: PR Check - Ruby analysis
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,12 +24,13 @@ on:
 jobs:
   ruby:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -48,14 +48,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -66,6 +59,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: ruby

.github/workflows/__scaling-reserved-ram.yml

@@ -1,109 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Scaling reserved RAM
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  scaling-reserved-ram:
-    strategy:
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: stable-20230403
-          - os: macos-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: macos-latest
-            version: stable-v2.13.5
-          - os: ubuntu-latest
-            version: stable-v2.14.6
-          - os: macos-latest
-            version: stable-v2.14.6
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: default
-          - os: macos-latest
-            version: default
-          - os: ubuntu-latest
-            version: latest
-          - os: macos-latest
-            version: latest
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-    name: Scaling reserved RAM
-    permissions:
-      contents: read
-      security-events: write
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Setup Python on MacOS
-        uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
-        with:
-          python-version: '3.11'
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-      - uses: ./../action/init
-        id: init
-        with:
-          db-location: ${{ runner.temp }}/customDbLocation
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
-
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-    env:
-      CODEQL_ACTION_SCALING_RESERVED_RAM: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -7,7 +7,6 @@ name: PR Check - Split workflow
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,12 +24,13 @@ on:
 jobs:
   split-workflow:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -48,14 +48,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -66,6 +59,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__submit-sarif-failure.yml

@@ -7,7 +7,6 @@ name: PR Check - Submit SARIF after failure
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   submit-sarif-failure:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,10 +53,12 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: actions/checkout@v4
       - uses: ./init
         with:
           languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Fail
     # We want this job to pass if the Action correctly uploads the SARIF file for
     # the failed run.

.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
+      - name: Check working directory
+        shell: bash
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -7,7 +7,6 @@ name: PR Check - Swift analysis using a custom build command
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,18 +24,13 @@ on:
 jobs:
   swift-custom-build:
     strategy:
+      fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: latest
           - os: macos-latest
-            version: latest
-          - os: ubuntu-latest
-            version: default
+            version: linked
           - os: macos-latest
             version: default
-          - os: ubuntu-latest
-            version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using a custom build command
@@ -48,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -66,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__test-autobuild-working-dir.yml

@@ -7,7 +7,6 @@ name: PR Check - Autobuild working directory
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   test-autobuild-working-dir:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
     name: Autobuild working directory
     permissions:
       contents: read
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Test setup
         shell: bash
         run: |
@@ -71,8 +65,6 @@ jobs:
         with:
           working-directory: autobuild-dir
       - uses: ./../action/analyze
-        with:
-          upload-database: false
       - name: Check database
         shell: bash
         run: |

.github/workflows/__test-local-codeql.yml

@@ -7,7 +7,6 @@ name: PR Check - Local CodeQL bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   test-local-codeql:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,6 +49,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Fetch a CodeQL bundle
         shell: bash
         env:
@@ -65,15 +59,12 @@ jobs:
       - id: init
         uses: ./../action/init
         with:
-          tools: ./codeql-bundle-linux64.tar.gz
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
       - name: Build code
         shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
-        with:
-          upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-proxy.yml

@@ -7,7 +7,6 @@ name: PR Check - Proxy test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,10 +24,11 @@ on:
 jobs:
   test-proxy:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
     name: Proxy test
     permissions:
       contents: read
@@ -38,14 +38,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -56,13 +49,12 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
       - uses: ./../action/init
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-        with:
-          upload-database: false
     env:
       https_proxy: http://squid-proxy:3128
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__unset-environment.yml

@@ -7,7 +7,6 @@ name: PR Check - Test unsetting environment variables
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,22 +24,11 @@ on:
 jobs:
   unset-environment:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-20230403
-          - os: ubuntu-latest
-            version: stable-v2.13.5
-          - os: ubuntu-latest
-            version: stable-v2.14.6
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
     name: Test unsetting environment variables
@@ -52,14 +40,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -70,20 +51,20 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/.github/actions/setup-swift
+      - uses: actions/setup-go@v5
         with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
+          go-version: '>=1.21.0'
       - name: Build code
         shell: bash
-    # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-    # workaround for our PR checks.
-        run: env -i CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN=true PATH="$PATH" HOME="$HOME"
-          ./build.sh
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:

.github/workflows/__upload-ref-sha-input.yml

@@ -7,7 +7,6 @@ name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,6 +24,7 @@ on:
 jobs:
   upload-ref-sha-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
@@ -69,9 +63,9 @@ jobs:
       - name: Build code
         shell: bash
         run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze
         with:
-          upload-database: false
           ref: refs/heads/main
           sha: 5e235361806c361d4d3f8859e3c897658025a9a2
           upload: never

.github/workflows/__with-checkout-path.yml

@@ -7,7 +7,6 @@ name: PR Check - Use a custom `checkout_path`
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -25,14 +24,15 @@ on:
 jobs:
   with-checkout-path:
     strategy:
+      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: latest
+            version: linked
           - os: macos-latest
-            version: latest
+            version: linked
           - os: windows-latest
-            version: latest
+            version: linked
     name: Use a custom `checkout_path`
     permissions:
       contents: read
@@ -42,14 +42,7 @@ jobs:
     steps:
       - name: Setup Python on MacOS
         uses: actions/setup-python@v5
-        if: >-
-          matrix.os == 'macos-latest' && (
-
-          matrix.version == 'stable-20230403' ||
-
-          matrix.version == 'stable-v2.13.5' ||
-
-          matrix.version == 'stable-v2.14.6')
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
         with:
           python-version: '3.11'
       - name: Check out repository
@@ -60,6 +53,7 @@ jobs:
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
       - name: Delete original checkout
         shell: bash
         run: |
@@ -92,14 +86,6 @@ jobs:
           checkout_path: x/y/z/some-path/tests/multi-language-repo
           ref: v1.1.0
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-          upload: never
-          upload-database: false
-
-      - uses: ./../action/upload-sarif
-        with:
-          ref: v1.1.0
-          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-          checkout_path: x/y/z/some-path/tests/multi-language-repo
 
       - name: Verify SARIF after upload
         shell: bash

.github/workflows/__zstd-bundle-fallback.yml

@@ -0,0 +1,123 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+    name: Zstandard bundle fallback
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v3
+        with:
+          name: zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check expected diagnostics
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            if (!toolsUrl.endsWith('.tar.gz')) {
+              core.setFailed(
+                `Expected the tools URL to be a .tar.gz file, but found '${toolsUrl}'.`
+              );
+            }
+
+            const zstdFailureReason = downloadTelemetryNotifications[0].properties.attributes.zstdFailureReason;
+            console.log(`Found zstd failure reason: ${zstdFailureReason}`);
+
+            const expectedZstdFailureReason = 'Failing since CODEQL_ACTION_FORCE_ZSTD_FAILURE is true.';
+            if (zstdFailureReason !== expectedZstdFailureReason) {
+              core.setFailed(
+                `Expected the zstd failure reason to be '${expectedZstdFailureReason}', but found '${zstdFailureReason}'.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_FORCE_ZSTD_FAILURE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle-streaming.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle (streaming)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle-streaming:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+    name: Zstandard bundle (streaming)
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v3
+        with:
+          name: zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            if (!toolsUrl.endsWith('.tar.zst')) {
+              core.setFailed(
+                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle.yml

@@ -0,0 +1,116 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Zstandard bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v3
+        with:
+          name: zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/codeql.yml

@@ -41,7 +41,7 @@ jobs:
       id: init-latest
       uses: ./init
       with:
-        tools: latest
+        tools: linked
         languages: javascript
     - name: Compare default and latest CodeQL bundle versions
       id: compare
@@ -54,16 +54,16 @@ jobs:
         echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
         echo "Latest CodeQL bundle version is $CODEQL_VERSION_LATEST"
 
-        # If we're running on a pull request, run with both bundles, even if `tools: latest` would
+        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
         # be the same as `tools: null`. This allows us to make the job for each of the bundles a
         # required status check.
         #
-        # If we're running on push or schedule, then we can skip running with `tools: latest` when it would be
+        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
         # the same as running with `tools: null`.
         if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LATEST" ]]; then
           VERSIONS_JSON='[null]'
         else
-          VERSIONS_JSON='[null, "latest"]'
+          VERSIONS_JSON='[null, "linked"]'
         fi
 
         # Output a JSON-encoded list with the distinct versions to test against.
@@ -73,8 +73,9 @@ jobs:
   build:
     needs: [check-codeql-versions]
     strategy:
+      fail-fast: false
       matrix:
-        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-11,macos-12,macos-13]
+        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-12,macos-13,macos-14]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
@@ -96,3 +97,5 @@ jobs:
       run: ${{steps.init.outputs.codeql-path}} version --format=json
     - name: Perform CodeQL Analysis
       uses: ./analyze
+      with:
+        category: "/language:javascript"

.github/workflows/codescanning-config-cli.yml

@@ -24,12 +24,13 @@ jobs:
     continue-on-error: true
 
     strategy:
+      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
-          version: latest
+          version: linked
         - os: macos-latest
-          version: latest
+          version: linked
         - os: ubuntu-latest
           version: default
         - os: macos-latest

.github/workflows/debug-artifacts-failure.yml

@@ -2,10 +2,8 @@
 # when the analyze step fails.
 name: PR Check - Debug artifacts after failure
 env:
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  CODEQL_ACTION_ARTIFACT_V4_UPGRADE: true
 on:
   push:
     branches:
@@ -37,7 +35,7 @@ jobs:
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
-          version: latest
+          version: linked
       - uses: actions/setup-go@v5
         with:
           go-version: ^1.13.1
@@ -64,7 +62,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
       - name: Check expected artifacts exist
         shell: bash
         run: |

.github/workflows/debug-artifacts-legacy.yml

@@ -0,0 +1,99 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist and are accessible
+# with download-artifact@v3 when CODEQL_ACTION_ARTIFACT_V4_UPGRADE is set to false.
+name: PR Check - Debug artifact upload using artifact@v2
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  CODEQL_ACTION_ARTIFACT_V4_UPGRADE: false
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.14.6
+        - stable-v2.15.5
+        - stable-v2.16.6
+        - stable-v2.17.6
+        - stable-v2.18.4
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby 
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-v2.14.6 stable-v2.15.5 stable-v2.16.6 stable-v2.17.6 stable-v2.18.4 default linked nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -1,10 +1,8 @@
 # Checks logs, SARIF, and database bundle debug artifacts exist.
 name: PR Check - Debug artifact upload
 env:
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  CODEQL_ACTION_ARTIFACT_V4_UPGRADE: true
 on:
   push:
     branches:
@@ -22,15 +20,16 @@ on:
 jobs:
   upload-artifacts:
     strategy:
+      fail-fast: false
       matrix:
         version:
-        - stable-20230403
-        - stable-v2.13.5
         - stable-v2.14.6
         - stable-v2.15.5
         - stable-v2.16.6
+        - stable-v2.17.6
+        - stable-v2.18.4
         - default
-        - latest
+        - linked
         - nightly-latest
     name: Upload debug artifacts
     env:
@@ -55,9 +54,8 @@ jobs:
           debug: true
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby 
       - name: Build code
         shell: bash
         run: ./build.sh
@@ -70,11 +68,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download all artifacts
-        uses: actions/download-artifact@v3
+        uses: actions/download-artifact@v4
       - name: Check expected artifacts exist
         shell: bash
         run: |
-          VERSIONS="stable-20230403 stable-v2.13.5 stable-v2.14.6 stable-v2.15.5 stable-v2.16.6 default latest nightly-latest"
+          VERSIONS="stable-v2.14.6 stable-v2.15.5 stable-v2.16.6 stable-v2.17.6 stable-v2.18.4 default linked nightly-latest"
           LANGUAGES="cpp csharp go java javascript python"
           for version in $VERSIONS; do
             pushd "./my-debug-artifacts-${version//./}"

.github/workflows/expected-queries-runs.yml

@@ -29,7 +29,7 @@ jobs:
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
-        version: latest
+        version: linked
     - uses: ./../action/init
       with:
         languages: javascript
@@ -37,8 +37,6 @@ jobs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
-        upload-database: false
-        upload: never
 
     - name: Check Sarif
       uses: ./../action/.github/actions/check-sarif

.github/workflows/post-release-mergeback.yml

@@ -108,6 +108,17 @@ jobs:
           # - `--force` since we're overwriting the `vN` tag
           git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
 
+      - name: Prepare partial Changelog
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+        run: |
+          python .github/workflows/script/prepare_changelog.py CHANGELOG.md "$VERSION" > $PARTIAL_CHANGELOG
+
+          echo "::group::Partial CHANGELOG"
+          cat $PARTIAL_CHANGELOG
+          echo "::endgroup::"
+
       - name: Create mergeback branch
         if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
         env:
@@ -150,3 +161,16 @@ jobs:
             --body "${pr_body}" \
             --assignee "${GITHUB_ACTOR}" \
             --draft
+
+      - name: Create the GitHub release
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          # Do not mark this release as latest. The most recent CLI release must be marked as latest.
+          gh release create \
+            "$VERSION" \
+            --latest=false \
+            --title "$VERSION" \
+            --notes-file "$PARTIAL_CHANGELOG"

.github/workflows/pr-checks.yml

@@ -2,7 +2,6 @@ name: PR Checks
 
 on:
   push:
-    branches: [main, releases/v*]
   pull_request:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
@@ -16,6 +15,7 @@ jobs:
     timeout-minutes: 45
 
     strategy:
+      fail-fast: false
       matrix:
         node-types-version: [16.11, current] # run tests on 16.11 while CodeQL Action v2 is still supported
 
@@ -24,7 +24,16 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Lint
-        run: npm run-script lint
+        id: lint
+        run: npm run-script lint-ci
+
+      - name: Upload sarif
+        uses: github/codeql-action/upload-sarif@v3
+        # Only upload SARIF for the latest version of Node.js
+        if: "!cancelled() && matrix.node-types-version == 'current' && !startsWith(github.head_ref, 'dependabot/')"
+        with:
+          sarif_file: eslint.sarif
+          category: eslint
 
       - name: Update version of @types/node
         if: matrix.node-types-version != 'current'
@@ -52,6 +61,7 @@ jobs:
         run: .github/workflows/script/check-js.sh
 
   check-node-modules:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check modules up to date
     runs-on: macos-latest
     timeout-minutes: 45
@@ -62,6 +72,7 @@ jobs:
         run: .github/workflows/script/check-node-modules.sh
 
   check-file-contents:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check file contents
     runs-on: ubuntu-latest
     timeout-minutes: 45
@@ -86,9 +97,11 @@ jobs:
         run: .github/workflows/script/verify-pr-checks.sh
 
   npm-test:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Unit Test
     needs: [check-js, check-node-modules]
     strategy:
+      fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
     runs-on: ${{ matrix.os }}
@@ -104,7 +117,7 @@ jobs:
           npm test
 
   check-node-version:
-    if: ${{ github.event.pull_request }}
+    if: github.event.pull_request
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45

.github/workflows/python312-windows.yml

@@ -14,6 +14,8 @@ on:
 
 jobs:
   test-setup-python-scripts:
+    env:
+      CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
     runs-on: windows-latest
 
@@ -32,11 +34,8 @@ jobs:
     - name: Initialize CodeQL
       uses: ./../action/init
       with:
-        tools: latest
+        tools: linked
         languages: python
 
     - name: Analyze
       uses: ./../action/analyze
-      with:
-        upload: false
-        upload-database: false

.github/workflows/query-filters.yml

@@ -27,7 +27,7 @@ jobs:
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
-        version: latest
+        version: linked
 
     - name: Check SARIF for default queries with Single include, Single exclude
       uses: ./../action/.github/actions/query-filter-test

.github/workflows/rebuild.yml

@@ -69,7 +69,8 @@ jobs:
           if [ ! -z "$(git status --porcelain)" ]; then
             git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
             git config --global user.name "github-actions[bot]"
-            git commit -am "Rebuild"
+            git add --all
+            git commit -m "Rebuild"
             git push origin "HEAD:$BRANCH"
             echo "Pushed a commit to rebuild the Action." \
               "Please mark the PR as ready for review to trigger PR checks." |

.github/workflows/script/prepare_changelog.py

@@ -0,0 +1,37 @@
+import os
+import sys
+
+EMPTY_CHANGELOG = 'No changes.\n\n'
+
+# Prepare the changelog for the new release
+# This function will extract the part of the changelog that
+# we want to include in the new release.
+def extract_changelog_snippet(changelog_file, version_tag):
+  output = ''
+  if (not os.path.exists(changelog_file)):
+    output = EMPTY_CHANGELOG
+
+  else:
+    with open('CHANGELOG.md', 'r') as f:
+      lines = f.readlines()
+
+      # Include everything up to, but excluding the second heading
+      found_first_section = False
+      for i, line in enumerate(lines):
+        if line.startswith('## '):
+          if found_first_section:
+            break
+          found_first_section = True
+        output += line
+
+  output += f"See the full [CHANGELOG.md](https://github.com/github/codeql-action/blob/{version_tag}/CHANGELOG.md) for more information."
+
+  return output
+
+
+if len(sys.argv) < 3:
+  raise Exception('Expecting argument: changelog_file version_tag')
+changelog_file = sys.argv[1]
+version_tag = sys.argv[2]
+
+print(extract_changelog_snippet(changelog_file, version_tag))

.github/workflows/script/update-node-modules.sh

@@ -1,9 +1,12 @@
-if [ "$1" != "update" && "$1" != "check-only" ]; then
+#!/bin/bash
+set -eu
+
+if [ "$1" != "update" ] && [ "$1" != "check-only" ]; then
     >&2 echo "Failed: Invalid argument. Must be 'update' or 'check-only'"
     exit 1
 fi
 
-sudo npm install --force -g npm@9.2.0
+npm install --force -g npm@9.2.0
 
 # clean the npm cache to ensure we don't have any files owned by root
 sudo npm cache clean --force

.github/workflows/script/update-required-checks.sh

@@ -28,7 +28,7 @@ fi
 echo "Getting checks for $GITHUB_SHA"
 
 # Ignore any checks with "https://", CodeQL, LGTM, and Update checks.
-CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs | .[].name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
 
 echo "$CHECKS" | jq
 

.github/workflows/test-codeql-bundle-all.yml

@@ -2,9 +2,6 @@ name: 'PR Check - CodeQL Bundle All'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -22,6 +19,7 @@ on:
 jobs:
   test-codeql-bundle-all:
     strategy:
+      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
@@ -44,15 +42,12 @@ jobs:
     - id: init
       uses: ./../action/init
       with:
+        # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+        languages: cpp,csharp,go,java,javascript,python,ruby 
         tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
     - name: Build code
       shell: bash
       run: ./build.sh
     - uses: ./../action/analyze
-      with:
-        upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/update-bundle.yml

@@ -54,7 +54,7 @@ jobs:
           cli_version=$(jq -r '.cliVersion' src/defaults.json)
           pr_url=$(gh pr create \
             --title "Update default bundle to $cli_version" \
-            --body "This pull request updates the default CodeQL bundle, as used with \`tools: latest\` and on GHES, to $cli_version." \
+            --body "This pull request updates the default CodeQL bundle, as used with \`tools: linked\` and on GHES, to $cli_version." \
             --assignee "$GITHUB_ACTOR" \
             --draft \
           )

.github/workflows/update-release-branch.yml

@@ -104,6 +104,7 @@ jobs:
   backport:
     timeout-minutes: 45
     runs-on: ubuntu-latest
+    environment: Automation
     needs: [prepare]
     if: ${{ (github.event_name == 'push') && needs.prepare.outputs.backport_target_branches != '[]' }}
     strategy:
@@ -114,9 +115,18 @@ jobs:
       SOURCE_BRANCH: ${{ needs.prepare.outputs.backport_source_branch }}
       TARGET_BRANCH: ${{ matrix.target_branch }}
     steps:
-    - uses: actions/checkout@v4
+    - name: Generate token
+      uses: actions/create-github-app-token@5d869da34e18e7287c1daad50e0b8ea0f506ce69
+      id: app-token
+      with:
+        app-id: ${{ vars.AUTOMATION_APP_ID }}
+        private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
+
+    - name: Checkout
+      uses: actions/checkout@v4
       with:
         fetch-depth: 0  # Need full history for calculation of diffs
+        token: ${{ steps.app-token.outputs.token }}
     - uses: ./.github/actions/release-initialise
 
     - name: Update older release branch

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -54,7 +54,8 @@ jobs:
             git push origin update-supported-enterprise-server-versions
 
             body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
-            body+="version is about to be feature frozen, or because an old release has been deprecated.\n\n"
+            body+="version is about to be feature frozen, or because an old release has been deprecated."
+            body+=$'\n\n'
             body+="If an old release has been deprecated, please follow the instructions in CONTRIBUTING.md to "
             body+="deprecate the corresponding version of CodeQL."
 

.gitignore

@@ -5,3 +5,7 @@ node_modules/.cache/
 *.class
 # macOS
 .DS_Store
+# eslint sarif report
+eslint.sarif
+# for local incremental compilation
+tsconfig.tsbuildinfo

CHANGELOG.md

@@ -6,6 +6,142 @@ Note that the only difference between `v2` and `v3` of the CodeQL Action is the
 
 ## [UNRELEASED]
 
+- Bump the minimum CodeQL bundle version to 2.14.6. [#2549](https://github.com/github/codeql-action/pull/2549)
+
+## 3.26.13 - 14 Oct 2024
+
+No user facing changes.
+
+## 3.26.12 - 07 Oct 2024
+
+- _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.14.5 and earlier. These versions of CodeQL were discontinued on 24 September 2024 alongside GitHub Enterprise Server 3.10, and will be unsupported by CodeQL Action versions 3.27.0 and later and versions 2.27.0 and later. [#2520](https://github.com/github/codeql-action/pull/2520)
+
+  - If you are using one of these versions, please update to CodeQL CLI version 2.14.6 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+
+  - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.13.5 and 2.14.5, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.26.11` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.26.11` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
+
+## 3.26.11 - 03 Oct 2024
+
+- _Upcoming breaking change_: Add support for using `actions/download-artifact@v4` to programmatically consume CodeQL Action debug artifacts. 
+
+  Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped to `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
+  
+  This change is currently unavailable for GitHub Enterprise Server customers, as `actions/upload-artifact@v4` and `actions/download-artifact@v4` are not yet compatible with GHES. 
+- Update default CodeQL bundle version to 2.19.1. [#2519](https://github.com/github/codeql-action/pull/2519)
+
+## 3.26.10 - 30 Sep 2024
+
+- We are rolling out a feature in September/October 2024 that sets up CodeQL using a bundle compressed with [Zstandard](http://facebook.github.io/zstd/). Our aim is to improve the performance of setting up CodeQL. [#2502](https://github.com/github/codeql-action/pull/2502)
+
+## 3.26.9 - 24 Sep 2024
+
+No user facing changes.
+
+## 3.26.8 - 19 Sep 2024
+
+- Update default CodeQL bundle version to 2.19.0. [#2483](https://github.com/github/codeql-action/pull/2483)
+
+## 3.26.7 - 13 Sep 2024
+
+- Update default CodeQL bundle version to 2.18.4. [#2471](https://github.com/github/codeql-action/pull/2471)
+
+## 3.26.6 - 29 Aug 2024
+
+- Update default CodeQL bundle version to 2.18.3. [#2449](https://github.com/github/codeql-action/pull/2449)
+
+## 3.26.5 - 23 Aug 2024
+
+- Fix an issue where the `csrutil` system call used for telemetry would fail on MacOS ARM machines with System Integrity Protection disabled. [#2441](https://github.com/github/codeql-action/pull/2441)
+
+## 3.26.4 - 21 Aug 2024
+
+- _Deprecation:_ The `add-snippets` input on the `analyze` Action is deprecated and will be removed in the first release in August 2025. [#2436](https://github.com/github/codeql-action/pull/2436)
+- Fix an issue where the disk usage system call used for telemetry would fail on MacOS ARM machines with System Integrity Protection disabled, and then surface a warning. The system call is now disabled for these machines. [#2434](https://github.com/github/codeql-action/pull/2434)
+
+## 3.26.3 - 19 Aug 2024
+
+- Fix an issue where the CodeQL Action could not write diagnostic messages on Windows. This issue did not impact analysis quality. [#2430](https://github.com/github/codeql-action/pull/2430)
+
+## 3.26.2 - 14 Aug 2024
+
+- Update default CodeQL bundle version to 2.18.2. [#2417](https://github.com/github/codeql-action/pull/2417)
+
+## 3.26.1 - 13 Aug 2024
+
+No user facing changes.
+
+## 3.26.0 - 06 Aug 2024
+
+- _Deprecation:_ Swift analysis on Ubuntu runner images is no longer supported. Please migrate to a macOS runner if this affects you. [#2403](https://github.com/github/codeql-action/pull/2403)
+- Bump the minimum CodeQL bundle version to 2.13.5. [#2408](https://github.com/github/codeql-action/pull/2408)
+
+## 3.25.15 - 26 Jul 2024
+
+- Update default CodeQL bundle version to 2.18.1. [#2385](https://github.com/github/codeql-action/pull/2385)
+
+## 3.25.14 - 25 Jul 2024
+
+- Experimental: add a new `start-proxy` action which starts the same HTTP proxy as used by [`github/dependabot-action`](https://github.com/github/dependabot-action). Do not use this in production as it is part of an internal experiment and subject to change at any time. [#2376](https://github.com/github/codeql-action/pull/2376)
+
+## 3.25.13 - 19 Jul 2024
+
+- Add `codeql-version` to outputs. [#2368](https://github.com/github/codeql-action/pull/2368)
+- Add a deprecation warning for customers using CodeQL version 2.13.4 and earlier. These versions of CodeQL were discontinued on 9 July 2024 alongside GitHub Enterprise Server 3.9, and will be unsupported by CodeQL Action versions 3.26.0 and later and versions 2.26.0 and later. [#2375](https://github.com/github/codeql-action/pull/2375)
+  - If you are using one of these versions, please update to CodeQL CLI version 2.13.5 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+  - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.12.6 and 2.13.4, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.25.13` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.25.13` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
+
+## 3.25.12 - 12 Jul 2024
+
+- Improve the reliability and performance of analyzing code when analyzing a compiled language with the `autobuild` [build mode](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages#codeql-build-modes) on GitHub Enterprise Server. This feature is already available to GitHub.com users. [#2353](https://github.com/github/codeql-action/pull/2353)
+- Update default CodeQL bundle version to 2.18.0. [#2364](https://github.com/github/codeql-action/pull/2364)
+
+## 3.25.11 - 28 Jun 2024
+
+- Avoid failing the workflow run if there is an error while uploading debug artifacts. [#2349](https://github.com/github/codeql-action/pull/2349)
+- Update default CodeQL bundle version to 2.17.6. [#2352](https://github.com/github/codeql-action/pull/2352)
+
+## 3.25.10 - 13 Jun 2024
+
+- Update default CodeQL bundle version to 2.17.5. [#2327](https://github.com/github/codeql-action/pull/2327)
+
+## 3.25.9 - 12 Jun 2024
+
+- Avoid failing database creation if the database folder already exists and contains some unexpected files. Requires CodeQL 2.18.0 or higher. [#2330](https://github.com/github/codeql-action/pull/2330)
+- The init Action will attempt to clean up the database cluster directory before creating a new database and at the end of the job. This will help to avoid issues where the database cluster directory is left in an inconsistent state. [#2332](https://github.com/github/codeql-action/pull/2332)
+
+## 3.25.8 - 04 Jun 2024
+
+- Update default CodeQL bundle version to 2.17.4. [#2321](https://github.com/github/codeql-action/pull/2321)
+
+## 3.25.7 - 31 May 2024
+
+- We are rolling out a feature in May/June 2024 that will reduce the Actions cache usage of the Action by keeping only the newest TRAP cache for each language. [#2306](https://github.com/github/codeql-action/pull/2306)
+
+## 3.25.6 - 20 May 2024
+
+- Update default CodeQL bundle version to 2.17.3. [#2295](https://github.com/github/codeql-action/pull/2295)
+
+## 3.25.5 - 13 May 2024
+
+- Add a compatibility matrix of supported CodeQL Action, CodeQL CLI, and GitHub Enterprise Server versions to the [README.md](README.md). [#2273](https://github.com/github/codeql-action/pull/2273)
+- Avoid printing out a warning for a missing `on.push` trigger when the CodeQL Action is triggered via a `workflow_call` event. [#2274](https://github.com/github/codeql-action/pull/2274)
+- The `tools: latest` input to the `init` Action has been renamed to `tools: linked`. This option specifies that the Action should use the tools shipped at the same time as the Action. The old name will continue to work for backwards compatibility, but we recommend that new workflows use the new name. [#2281](https://github.com/github/codeql-action/pull/2281)
+
+## 3.25.4 - 08 May 2024
+
+- Update default CodeQL bundle version to 2.17.2. [#2270](https://github.com/github/codeql-action/pull/2270)
+
+## 3.25.3 - 25 Apr 2024
+
+- Update default CodeQL bundle version to 2.17.1. [#2247](https://github.com/github/codeql-action/pull/2247)
+- Workflows running on `macos-latest` using CodeQL CLI versions before v2.15.1 will need to either upgrade their CLI version to v2.15.1 or newer, or change the platform to an Intel MacOS runner, such as `macos-12`. ARM machines with SIP disabled, including the newest `macos-latest` image, are unsupported for CLI versions before 2.15.1. [#2261](https://github.com/github/codeql-action/pull/2261)
+
+## 3.25.2 - 22 Apr 2024
+
+No user facing changes.
+
+## 3.25.1 - 17 Apr 2024
+
 - We are rolling out a feature in April/May 2024 that improves the reliability and performance of analyzing code when analyzing a compiled language with the `autobuild` [build mode](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages#codeql-build-modes). [#2235](https://github.com/github/codeql-action/pull/2235)
 - Fix a bug where the `init` Action would fail if `--overwrite` was specified in `CODEQL_ACTION_EXTRA_OPTIONS`. [#2245](https://github.com/github/codeql-action/pull/2245)
 
@@ -17,7 +153,7 @@ Note that the only difference between `v2` and `v3` of the CodeQL Action is the
 
   - The `setup-python-dependencies` input to the `init` Action
   - The `CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION` environment variable
-  
+
   We recommend removing any references to these from your workflows. For more information, see the release notes for CodeQL Action v3.23.0 and v2.23.0.
 - Automatically overwrite an existing database if found on the filesystem. [#2229](https://github.com/github/codeql-action/pull/2229)
 - Bump the minimum CodeQL bundle version to 2.12.6. [#2232](https://github.com/github/codeql-action/pull/2232)

CONTRIBUTING.md

@@ -3,6 +3,7 @@
 [fork]: https://github.com/github/codeql-action/fork
 [pr]: https://github.com/github/codeql-action/compare
 [code-of-conduct]: CODE_OF_CONDUCT.md
+[readme]: README.md#supported-versions-of-the-codeql-cli-and-github-enterprise-server
 
 Hi there! We're thrilled that you'd like to contribute to this project. Your help is essential for keeping it great.
 
@@ -84,6 +85,7 @@ We typically deprecate a version of CodeQL when the GitHub Enterprise Server (GH
 1. Notify users using the old version of CodeQL about the deprecation.
     - Update `CODEQL_NEXT_MINIMUM_VERSION`, `GHES_VERSION_MOST_RECENTLY_DEPRECATED`, and `GHES_MOST_RECENT_DEPRECATION_DATE` in `src/codeql.ts` to reflect the new minimum version of CodeQL and the GHES version that has just been deprecated.
     - Add a changelog note announcing the deprecation.
+    - Update the CLI version referenced in the [readme] by adding a new row to the compatibility table.
     - Example PR: https://github.com/github/codeql-action/pull/1884
 1. Release the Action, or wait for the next scheduled release of the Action, then wait at least a week so users have time to see and act on the deprecation warning.
 1. Remove support for the old version of CodeQL.

README.md

@@ -16,10 +16,48 @@ We recommend using default setup to configure CodeQL analysis for your repositor
 
 You can also configure advanced setup for a repository to find security vulnerabilities in your code using a highly customizable code scanning configuration. For more information, see "[Configuring advanced setup for code scanning](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/configuring-advanced-setup-for-code-scanning)" and "[Customizing your advanced setup for code scanning](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning)."
 
-### Permissions
+### Actions
+
+This repository contains several actions that enable you to analyze code in your repository using CodeQL and upload the analysis to GitHub Code Scanning. Actions in this repository also allow you to upload to GitHub analyses generated by any SARIF-producing SAST tool.
+
+Actions for CodeQL analyses:
+
+- `init`: Sets up CodeQL for analysis. For information about input parameters, see the [init action definition](https://github.com/github/codeql-action/blob/main/init/action.yml).
+- `analyze`: Finalizes the CodeQL database, runs the analysis, and uploads the results to Code Scanning. For information about input parameters, see the [analyze action definition](https://github.com/github/codeql-action/blob/main/analyze/action.yml).
+
+Actions for uploading analyses generated by third-party tools:
+
+- `upload-sarif`: Uploads a SARIF file to Code Scanning. If you are using the `analyze` action, there is no reason to use this action as well. For information about input parameters, see the [upload-sarif action definition](https://github.com/github/codeql-action/blob/main/upload-sarif/action.yml).
+
+Actions with special purposes and unlikely to be used directly:
+
+- `autobuild`: Attempts to automatically build the code. Only used for analyzing languages that require a build. Use the `build-mode: autobuild` input in the `init` action instead. For information about input parameters, see the [autobuild action definition](https://github.com/github/codeql-action/blob/main/autobuild/action.yml).
+- `resolve-environment`: [Experimental] Attempts to infer a build environment suitable for automatic builds. For information about input parameters, see the [resolve-environment action definition](https://github.com/github/codeql-action/blob/main/resolve-environment/action.yml).
+- `start-proxy`: [Experimental] Start the HTTP proxy server. Internal use only and will change without notice. For information about input parameters, see the [start-proxy action definition](https://github.com/github/codeql-action/blob/main/start-proxy/action.yml).
+
+### Workflow Permissions
 
 All advanced setup code scanning workflows must have the `security-events: write` permission. Workflows in private repositories must additionally have the `contents: read` permission. For more information, see "[Assigning permissions to jobs](https://docs.github.com/en/actions/using-jobs/assigning-permissions-to-jobs)."
 
+### Build Modes
+
+The CodeQL Action supports different build modes for analyzing the source code. The available build modes are:
+
+- `none`: The database will be created without building the source code. Available for all interpreted languages and some compiled languages.
+- `autobuild`: The database will be created by attempting to automatically build the source code. Available for all compiled languages.
+- `manual`: The database will be created by building the source code using a manually specified build command. To use this build mode, specify manual build steps in your workflow between the `init` and `analyze` steps. Available for all compiled languages.
+
+#### Which build mode should I use?
+
+Interpreted languages must use `none` for the build mode.
+
+For compiled languages:
+
+- `manual` build mode will typically produce the most precise results, but it is more difficult to set up and will cause the analysis to take slightly more time to run.
+- `autobuild` build mode is simpler to set up, but will only work for projects with generic build steps that can be guessed by the heuristics of the autobuild scripts. If `autobuild` fails, then you must switch to `manual` or `none`. If `autobuild` succeeds, then the results and run time will be the same as `manual` mode.
+- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by C/C++, Swift, Go, or Kotlin.
+
+
 ## Supported versions of the CodeQL Action
 
 The following versions of the CodeQL Action are currently supported:
@@ -33,6 +71,22 @@ To provide the best experience to customers using older versions of GitHub Enter
 
 For more information, see "[Code scanning: deprecation of CodeQL Action v2](https://github.blog/changelog/2024-01-12-code-scanning-deprecation-of-codeql-action-v2/)."
 
+## Supported versions of the CodeQL Bundle on GitHub Enterprise Server
+
+We typically release new minor versions of the CodeQL Action and Bundle when a new minor version of GitHub Enterprise Server (GHES) is released. When a version of GHES is deprecated, the CodeQL Action and Bundle releases that shipped with it are deprecated as well.
+
+| Minimum CodeQL Action | Minimum CodeQL Bundle Version | GitHub Environment | Notes |
+|-----------------------|-------------------------------|--------------------|-------|
+| `v3.26.6` | `2.18.4` | Enterprise Server 3.15 | |
+| `v3.25.11` | `2.17.6` | Enterprise Server 3.14 | |
+| `v3.24.11` | `2.16.6` | Enterprise Server 3.13 | |
+| `v3.22.12` | `2.15.5` | Enterprise Server 3.12 | |
+| `v2.22.1` | `2.14.6` | Enterprise Server 3.11 | Supports CodeQL Action v3, but did not ship with CodeQL Action v3. For more information, see "[Code scanning: deprecation of CodeQL Action v2](https://github.blog/changelog/2024-01-12-code-scanning-deprecation-of-codeql-action-v2/#users-of-github-enterprise-server-311)." |
+
+CodeQL Action v2 will stop receiving updates when GHES 3.11 is deprecated.
+
+See the full list of GHES release and deprecation dates at [GitHub Enterprise Server releases](https://docs.github.com/en/enterprise-server/admin/all-releases#releases-of-github-enterprise-server).
+
 ## Troubleshooting
 
 Read about [troubleshooting code scanning](https://docs.github.com/en/code-security/code-scanning/troubleshooting-code-scanning).

analyze/action.yml

@@ -19,7 +19,7 @@ inputs:
     # If changing this, make sure to update workflow.ts accordingly.
     default: "always"
   cleanup-level:
-    description: "Level of cleanup to perform on CodeQL databases at the end of the analyze step. This should either be 'none' to skip cleanup, or be a valid argument for the --mode flag of the CodeQL CLI command 'codeql database cleanup' as documented at https://codeql.github.com/docs/codeql-cli/manual/database-cleanup"
+    description: "Level of cleanup to perform on CodeQL databases at the end of the analyze step. This should either be 'none' to skip cleanup, or be a valid argument for the --cache-cleanup flag of the CodeQL CLI command 'codeql database cleanup' as documented at https://codeql.github.com/docs/codeql-cli/manual/database-cleanup"
     required: false
     default: "brutal"
   ram:
@@ -34,6 +34,11 @@ inputs:
     description: Specify whether or not to add code snippets to the output sarif file.
     required: false
     default: "false"
+    deprecationMessage: >-
+      The input "add-snippets" is deprecated and will be removed on the first release in August 2025.
+      When this input is set to true it is expected to add code snippets with an alert to the SARIF file.
+      However, since Code Scanning ignores code snippets provided as part of a SARIF file this is currently
+      a no operation. No alternative is available.
   skip-queries:
     description: If this option is set, the CodeQL database will be built but no queries will be run on it. Thus, no results will be produced.
     required: false
@@ -69,7 +74,7 @@ inputs:
     required: true
     default: "true"
   token:
-    description: "GitHub token to use for authenticating with this instance of GitHub. The token needs the `security-events: write` permission."
+    description: "GitHub token to use for authenticating with this instance of GitHub. The token must be the built-in GitHub Actions token, and the workflow must have the `security-events: write` permission. Most of the time it is advisable to avoid specifying this input so that the workflow falls back to using the default value."
     required: false
     default: ${{ github.token }}
   matrix:

autobuild/action.yml

@@ -1,5 +1,5 @@
 name: 'CodeQL: Autobuild'
-description: 'Attempt to automatically build code'
+description: 'Attempt to automatically build the code. Only used for analyzing languages that require a build. Use the `build-mode: autobuild` input in the `init` action instead.'
 author: 'GitHub'
 inputs:
   token:

eslint.config.mjs

@@ -0,0 +1,149 @@
+// Automatically generated by running npx @eslint/migrate-config .eslintrc.json
+
+import path from "node:path";
+import { fileURLToPath } from "node:url";
+
+import { fixupConfigRules, fixupPluginRules } from "@eslint/compat";
+import { FlatCompat } from "@eslint/eslintrc";
+import js from "@eslint/js";
+import typescriptEslint from "@typescript-eslint/eslint-plugin";
+import tsParser from "@typescript-eslint/parser";
+import filenames from "eslint-plugin-filenames";
+import github from "eslint-plugin-github";
+import _import from "eslint-plugin-import";
+import noAsyncForeach from "eslint-plugin-no-async-foreach";
+import globals from "globals";
+
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+const compat = new FlatCompat({
+  baseDirectory: __dirname,
+  recommendedConfig: js.configs.recommended,
+  allConfig: js.configs.all,
+});
+
+export default [
+  {
+    ignores: [
+      "**/webpack.config.js",
+      "lib/**/*",
+      "src/testdata/**/*",
+      "tests/**/*",
+      "eslint.config.mjs",
+      ".github/**/*",
+    ],
+  },
+  ...fixupConfigRules(
+    compat.extends(
+      "eslint:recommended",
+      "plugin:@typescript-eslint/recommended",
+      "plugin:@typescript-eslint/recommended-requiring-type-checking",
+      "plugin:github/recommended",
+      "plugin:github/typescript",
+      "plugin:import/typescript",
+    ),
+  ),
+  {
+    plugins: {
+      "@typescript-eslint": fixupPluginRules(typescriptEslint),
+      filenames: fixupPluginRules(filenames),
+      github: fixupPluginRules(github),
+      import: fixupPluginRules(_import),
+      "no-async-foreach": noAsyncForeach,
+    },
+
+    languageOptions: {
+      parser: tsParser,
+      ecmaVersion: 5,
+      sourceType: "module",
+
+      globals: {
+        ...globals.node,
+      },
+
+      parserOptions: {
+        project: "./tsconfig.json",
+      },
+    },
+
+    settings: {
+      "import/resolver": {
+        node: {
+          moduleDirectory: ["node_modules", "src"],
+        },
+
+        typescript: {},
+      },
+      "import/ignore": ["sinon", "uuid", "@octokit/plugin-retry"],
+    },
+
+    rules: {
+      "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
+      "i18n-text/no-en": "off",
+
+      "import/extensions": [
+        "error",
+        {
+          json: {},
+        },
+      ],
+
+      "import/no-amd": "error",
+      "import/no-commonjs": "error",
+      "import/no-cycle": "error",
+      "import/no-dynamic-require": "error",
+
+      "import/no-extraneous-dependencies": [
+        "error",
+        {
+          devDependencies: true,
+        },
+      ],
+
+      "import/no-namespace": "off",
+      "import/no-unresolved": "error",
+      "import/no-webpack-loader-syntax": "error",
+
+      "import/order": [
+        "error",
+        {
+          alphabetize: {
+            order: "asc",
+          },
+
+          "newlines-between": "always",
+        },
+      ],
+
+      "max-len": [
+        "error",
+        {
+          code: 120,
+          ignoreUrls: true,
+          ignoreStrings: true,
+          ignoreTemplateLiterals: true,
+        },
+      ],
+
+      "no-async-foreach/no-async-foreach": "error",
+      "no-sequences": "error",
+      "no-shadow": "off",
+      "@typescript-eslint/no-shadow": "error",
+      "one-var": ["error", "never"],
+    },
+  },
+  {
+    files: ["**/*.ts", "**/*.js"],
+
+    rules: {
+      "@typescript-eslint/no-explicit-any": "off",
+      "@typescript-eslint/no-unsafe-assignment": "off",
+      "@typescript-eslint/no-unsafe-member-access": "off",
+      "@typescript-eslint/no-var-requires": "off",
+      "@typescript-eslint/prefer-regexp-exec": "off",
+      "@typescript-eslint/require-await": "off",
+      "@typescript-eslint/restrict-template-expressions": "off",
+      "func-style": "off",
+    },
+  },
+];

init/action.yml

@@ -3,9 +3,19 @@ description: 'Set up CodeQL'
 author: 'GitHub'
 inputs:
   tools:
-    description: URL of CodeQL tools
+    description: >-
+      By default, the Action will use the recommended version of the CodeQL
+      Bundle to analyze your project. You can override this choice using this
+      input. One of:
+
+      - A local path to a CodeQL Bundle tarball, or
+      - The URL of a CodeQL Bundle tarball GitHub release asset, or
+      - A special value `linked` which uses the version of the CodeQL tools
+        that the Action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
     required: false
-    # If not specified the Action will check in several places until it finds the CodeQL tools.
   languages:
     description: >-
       A comma-separated list of CodeQL languages to analyze.
@@ -26,10 +36,7 @@ inputs:
       - `none`:      The database will be created without building the source code.
                      Available for all interpreted languages and some compiled languages.
       - `autobuild`: The database will be created by attempting to automatically build the source
-                     code.
-                     To use this build mode, ensure that your workflow calls the `autobuild` action
-                     between the `init` and `analyze` steps.
-                     Available for all compiled languages.
+                     code. Available for all compiled languages.
       - `manual`:   The database will be created by building the source code using a manually
                      specified build command. To use this build mode, specify manual build steps in
                      your workflow between the `init` and `analyze` steps. Available for all
@@ -132,6 +139,8 @@ inputs:
 outputs:
   codeql-path:
     description: The path of the CodeQL binary used for analysis
+  codeql-version:
+    description: The version of the CodeQL binary used for analysis
 runs:
   using: node20
   main: '../lib/init-action.js'

lib/actions-util.js

@@ -23,14 +23,30 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getFileType = exports.FileCmdNotFoundError = exports.getWorkflowRunAttempt = exports.getWorkflowRunID = exports.getUploadValue = exports.printDebugLogs = exports.isAnalyzingDefaultBranch = exports.getRelativeScriptPath = exports.isRunningLocalAction = exports.getWorkflowEventName = exports.getActionVersion = exports.getRef = exports.determineMergeBaseCommitOid = exports.getCommitOid = exports.getTemporaryDirectory = exports.getOptionalInput = exports.getRequiredInput = void 0;
+exports.CommandInvocationError = exports.getFileType = exports.FileCmdNotFoundError = exports.determineBaseBranchHeadCommitOid = exports.getCommitOid = exports.getOptionalInput = exports.getRequiredInput = void 0;
+exports.getTemporaryDirectory = getTemporaryDirectory;
+exports.getRef = getRef;
+exports.getActionVersion = getActionVersion;
+exports.getWorkflowEventName = getWorkflowEventName;
+exports.isRunningLocalAction = isRunningLocalAction;
+exports.getRelativeScriptPath = getRelativeScriptPath;
+exports.getWorkflowEvent = getWorkflowEvent;
+exports.isAnalyzingDefaultBranch = isAnalyzingDefaultBranch;
+exports.printDebugLogs = printDebugLogs;
+exports.getUploadValue = getUploadValue;
+exports.getWorkflowRunID = getWorkflowRunID;
+exports.getWorkflowRunAttempt = getWorkflowRunAttempt;
+exports.isSelfHostedRunner = isSelfHostedRunner;
+exports.prettyPrintInvocation = prettyPrintInvocation;
+exports.ensureEndsInPeriod = ensureEndsInPeriod;
+exports.runTool = runTool;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const core = __importStar(require("@actions/core"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
 const safeWhich = __importStar(require("@chrisgavin/safe-which"));
 const util_1 = require("./util");
-// eslint-disable-next-line import/no-commonjs
+// eslint-disable-next-line import/no-commonjs, @typescript-eslint/no-require-imports
 const pkg = require("../package.json");
 /**
  * Wrapper around core.getInput for inputs that always have a value.
@@ -63,7 +79,34 @@ function getTemporaryDirectory() {
         ? value
         : (0, util_1.getRequiredEnvParam)("RUNNER_TEMP");
 }
-exports.getTemporaryDirectory = getTemporaryDirectory;
+async function runGitCommand(checkoutPath, args, customErrorMessage) {
+    let stdout = "";
+    let stderr = "";
+    try {
+        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), args, {
+            silent: true,
+            listeners: {
+                stdout: (data) => {
+                    stdout += data.toString();
+                },
+                stderr: (data) => {
+                    stderr += data.toString();
+                },
+            },
+            cwd: checkoutPath,
+        }).exec();
+        return stdout;
+    }
+    catch (error) {
+        let reason = stderr;
+        if (stderr.includes("not a git repository")) {
+            reason =
+                "The checkout path provided to the action does not appear to be a git repository.";
+        }
+        core.info(`git call failed. ${customErrorMessage} Error: ${reason}`);
+        throw error;
+    }
+}
 /**
  * Gets the SHA of the commit that is currently checked out.
  */
@@ -75,72 +118,45 @@ const getCommitOid = async function (checkoutPath, ref = "HEAD") {
     // the merge commit, which must mean that git is available.
     // Even if this does go wrong, it's not a huge problem for the alerts to
     // reported on the merge commit.
-    let stderr = "";
     try {
-        let commitOid = "";
-        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), ["rev-parse", ref], {
-            silent: true,
-            listeners: {
-                stdout: (data) => {
-                    commitOid += data.toString();
-                },
-                stderr: (data) => {
-                    stderr += data.toString();
-                },
-            },
-            cwd: checkoutPath,
-        }).exec();
-        return commitOid.trim();
+        const stdout = await runGitCommand(checkoutPath, ["rev-parse", ref], "Continuing with commit SHA from user input or environment.");
+        return stdout.trim();
     }
-    catch (e) {
-        if (stderr.includes("not a git repository")) {
-            core.info("Could not determine current commit SHA using git. Continuing with data from user input or environment. " +
-                "The checkout path provided to the action does not appear to be a git repository.");
-        }
-        else {
-            core.info(`Could not determine current commit SHA using git. Continuing with data from user input or environment. ${stderr}`);
-        }
+    catch {
         return (0, exports.getOptionalInput)("sha") || (0, util_1.getRequiredEnvParam)("GITHUB_SHA");
     }
 };
 exports.getCommitOid = getCommitOid;
 /**
- * If the action was triggered by a pull request, determine the commit sha of the merge base.
- * Returns undefined if run by other triggers or the merge base cannot be determined.
+ * If the action was triggered by a pull request, determine the commit sha at
+ * the head of the base branch, using the merge commit that this workflow analyzes.
+ * Returns undefined if run by other triggers or the base branch commit cannot be
+ * determined.
  */
-const determineMergeBaseCommitOid = async function (checkoutPathOverride) {
+const determineBaseBranchHeadCommitOid = async function (checkoutPathOverride) {
     if (getWorkflowEventName() !== "pull_request") {
         return undefined;
     }
     const mergeSha = (0, util_1.getRequiredEnvParam)("GITHUB_SHA");
     const checkoutPath = checkoutPathOverride ?? (0, exports.getOptionalInput)("checkout_path");
-    let stderr = "";
     try {
         let commitOid = "";
         let baseOid = "";
         let headOid = "";
-        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), ["show", "-s", "--format=raw", mergeSha], {
-            silent: true,
-            listeners: {
-                stdline: (data) => {
-                    if (data.startsWith("commit ") && commitOid === "") {
-                        commitOid = data.substring(7);
-                    }
-                    else if (data.startsWith("parent ")) {
-                        if (baseOid === "") {
-                            baseOid = data.substring(7);
-                        }
-                        else if (headOid === "") {
-                            headOid = data.substring(7);
-                        }
-                    }
-                },
-                stderr: (data) => {
-                    stderr += data.toString();
-                },
-            },
-            cwd: checkoutPath,
-        }).exec();
+        const stdout = await runGitCommand(checkoutPath, ["show", "-s", "--format=raw", mergeSha], "Will calculate the base branch SHA on the server.");
+        for (const data of stdout.split("\n")) {
+            if (data.startsWith("commit ") && commitOid === "") {
+                commitOid = data.substring(7);
+            }
+            else if (data.startsWith("parent ")) {
+                if (baseOid === "") {
+                    baseOid = data.substring(7);
+                }
+                else if (headOid === "") {
+                    headOid = data.substring(7);
+                }
+            }
+        }
         // Let's confirm our assumptions: We had a merge commit and the parsed parent data looks correct
         if (commitOid === mergeSha &&
             headOid.length === 40 &&
@@ -149,19 +165,11 @@ const determineMergeBaseCommitOid = async function (checkoutPathOverride) {
         }
         return undefined;
     }
-    catch (e) {
-        if (stderr.includes("not a git repository")) {
-            core.info("The checkout path provided to the action does not appear to be a git repository. " +
-                "Will calculate the merge base on the server.");
-        }
-        else {
-            core.info(`Failed to call git to determine merge base. Will calculate the merge base on ` +
-                `the server. Reason: ${stderr}`);
-        }
+    catch {
         return undefined;
     }
 };
-exports.determineMergeBaseCommitOid = determineMergeBaseCommitOid;
+exports.determineBaseBranchHeadCommitOid = determineBaseBranchHeadCommitOid;
 /**
  * Get the ref currently being analyzed.
  */
@@ -211,7 +219,6 @@ async function getRef() {
         return ref;
     }
 }
-exports.getRef = getRef;
 function getRefFromEnv() {
     // To workaround a limitation of Actions dynamic workflows not setting
     // the GITHUB_REF in some cases, we accept also the ref within the
@@ -235,7 +242,6 @@ function getRefFromEnv() {
 function getActionVersion() {
     return pkg.version;
 }
-exports.getActionVersion = getActionVersion;
 /**
  * Returns the name of the event that triggered this workflow.
  *
@@ -244,7 +250,6 @@ exports.getActionVersion = getActionVersion;
 function getWorkflowEventName() {
     return (0, util_1.getRequiredEnvParam)("GITHUB_EVENT_NAME");
 }
-exports.getWorkflowEventName = getWorkflowEventName;
 /**
  * Returns whether the current workflow is executing a local copy of the Action, e.g. we're running
  * a workflow on the codeql-action repo itself.
@@ -253,7 +258,6 @@ function isRunningLocalAction() {
     const relativeScriptPath = getRelativeScriptPath();
     return (relativeScriptPath.startsWith("..") || path.isAbsolute(relativeScriptPath));
 }
-exports.isRunningLocalAction = isRunningLocalAction;
 /**
  * Get the location where the Action is running from.
  *
@@ -264,7 +268,6 @@ function getRelativeScriptPath() {
     const actionsDirectory = path.join(path.dirname(runnerTemp), "_actions");
     return path.relative(actionsDirectory, __filename);
 }
-exports.getRelativeScriptPath = getRelativeScriptPath;
 /** Returns the contents of `GITHUB_EVENT_PATH` as a JSON object. */
 function getWorkflowEvent() {
     const eventJsonFile = (0, util_1.getRequiredEnvParam)("GITHUB_EVENT_PATH");
@@ -299,7 +302,6 @@ async function isAnalyzingDefaultBranch() {
     }
     return currentRef === defaultBranch;
 }
-exports.isAnalyzingDefaultBranch = isAnalyzingDefaultBranch;
 async function printDebugLogs(config) {
     for (const language of config.languages) {
         const databaseDirectory = (0, util_1.getCodeQLDatabasePath)(config, language);
@@ -328,7 +330,6 @@ async function printDebugLogs(config) {
         walkLogFiles(logsDirectory);
     }
 }
-exports.printDebugLogs = printDebugLogs;
 /**
  * Parses the `upload` input into an `UploadKind`, converting unspecified and deprecated upload
  * inputs appropriately.
@@ -349,7 +350,6 @@ function getUploadValue(input) {
             return "always";
     }
 }
-exports.getUploadValue = getUploadValue;
 /**
  * Get the workflow run ID.
  */
@@ -364,7 +364,6 @@ function getWorkflowRunID() {
     }
     return workflowRunID;
 }
-exports.getWorkflowRunID = getWorkflowRunID;
 /**
  * Get the workflow run attempt number.
  */
@@ -379,7 +378,6 @@ function getWorkflowRunAttempt() {
     }
     return workflowRunAttempt;
 }
-exports.getWorkflowRunAttempt = getWorkflowRunAttempt;
 class FileCmdNotFoundError extends Error {
     constructor(msg) {
         super(msg);
@@ -424,4 +422,82 @@ const getFileType = async (filePath) => {
     }
 };
 exports.getFileType = getFileType;
+function isSelfHostedRunner() {
+    return process.env.RUNNER_ENVIRONMENT === "self-hosted";
+}
+function prettyPrintInvocation(cmd, args) {
+    return [cmd, ...args].map((x) => (x.includes(" ") ? `'${x}'` : x)).join(" ");
+}
+/**
+ * An error from a tool invocation, with associated exit code, stderr, etc.
+ */
+class CommandInvocationError extends Error {
+    constructor(cmd, args, exitCode, stderr, stdout) {
+        const prettyCommand = prettyPrintInvocation(cmd, args);
+        const lastLine = ensureEndsInPeriod(stderr.trim().split("\n").pop()?.trim() || "n/a");
+        super(`Failed to run "${prettyCommand}". ` +
+            `Exit code was ${exitCode} and last log line was: ${lastLine} See the logs for more details.`);
+        this.cmd = cmd;
+        this.args = args;
+        this.exitCode = exitCode;
+        this.stderr = stderr;
+        this.stdout = stdout;
+    }
+}
+exports.CommandInvocationError = CommandInvocationError;
+function ensureEndsInPeriod(text) {
+    return text[text.length - 1] === "." ? text : `${text}.`;
+}
+/**
+ * A constant defining the maximum number of characters we will keep from
+ * the programs stderr for logging.
+ *
+ * This serves two purposes:
+ * 1. It avoids an OOM if a program fails in a way that results it
+ *    printing many log lines.
+ * 2. It avoids us hitting the limit of how much data we can send in our
+ *    status reports on GitHub.com.
+ */
+const MAX_STDERR_BUFFER_SIZE = 20000;
+/**
+ * Runs a CLI tool.
+ *
+ * @returns Standard output produced by the tool.
+ * @throws A `CommandInvocationError` if the tool exits with a non-zero status code.
+ */
+async function runTool(cmd, args = [], opts = {}) {
+    let stdout = "";
+    let stderr = "";
+    if (!opts.noStreamStdout) {
+        process.stdout.write(`[command]${cmd} ${args.join(" ")}\n`);
+    }
+    const exitCode = await new toolrunner.ToolRunner(cmd, args, {
+        ignoreReturnCode: true,
+        listeners: {
+            stdout: (data) => {
+                stdout += data.toString("utf8");
+                if (!opts.noStreamStdout) {
+                    process.stdout.write(data);
+                }
+            },
+            stderr: (data) => {
+                let readStartIndex = 0;
+                // If the error is too large, then we only take the last MAX_STDERR_BUFFER_SIZE characters
+                if (data.length - MAX_STDERR_BUFFER_SIZE > 0) {
+                    // Eg: if we have MAX_STDERR_BUFFER_SIZE the start index should be 2.
+                    readStartIndex = data.length - MAX_STDERR_BUFFER_SIZE + 1;
+                }
+                stderr += data.toString("utf8", readStartIndex);
+                // Mimic the standard behavior of the toolrunner by writing stderr to stdout
+                process.stdout.write(data);
+            },
+        },
+        silent: true,
+        ...(opts.stdin ? { input: Buffer.from(opts.stdin || "") } : {}),
+    }).exec();
+    if (exitCode !== 0) {
+        throw new CommandInvocationError(cmd, args, exitCode, stderr, stdout);
+    }
+    return stdout;
+}
 //# sourceMappingURL=actions-util.js.map

lib/actions-util.test.js

@@ -214,34 +214,36 @@ const util_1 = require("./util");
         getAdditionalInputStub.restore();
     });
 });
-(0, ava_1.default)("determineMergeBaseCommitOid non-pullrequest", async (t) => {
+(0, ava_1.default)("determineBaseBranchHeadCommitOid non-pullrequest", async (t) => {
     const infoStub = sinon.stub(core, "info");
     process.env["GITHUB_EVENT_NAME"] = "hucairz";
     process.env["GITHUB_SHA"] = "100912429fab4cb230e66ffb11e738ac5194e73a";
-    const result = await actionsUtil.determineMergeBaseCommitOid(__dirname);
+    const result = await actionsUtil.determineBaseBranchHeadCommitOid(__dirname);
     t.deepEqual(result, undefined);
     t.deepEqual(0, infoStub.callCount);
     infoStub.restore();
 });
-(0, ava_1.default)("determineMergeBaseCommitOid no error", async (t) => {
+(0, ava_1.default)("determineBaseBranchHeadCommitOid not git repository", async (t) => {
     const infoStub = sinon.stub(core, "info");
     process.env["GITHUB_EVENT_NAME"] = "pull_request";
     process.env["GITHUB_SHA"] = "100912429fab4cb230e66ffb11e738ac5194e73a";
     await (0, util_1.withTmpDir)(async (tmpDir) => {
-        await actionsUtil.determineMergeBaseCommitOid(tmpDir);
+        await actionsUtil.determineBaseBranchHeadCommitOid(tmpDir);
     });
     t.deepEqual(1, infoStub.callCount);
-    t.assert(infoStub.firstCall.args[0].startsWith("The checkout path provided to the action does not appear to be a git repository."));
+    t.deepEqual(infoStub.firstCall.args[0], "git call failed. Will calculate the base branch SHA on the server. Error: " +
+        "The checkout path provided to the action does not appear to be a git repository.");
     infoStub.restore();
 });
-(0, ava_1.default)("determineMergeBaseCommitOid other error", async (t) => {
+(0, ava_1.default)("determineBaseBranchHeadCommitOid other error", async (t) => {
     const infoStub = sinon.stub(core, "info");
     process.env["GITHUB_EVENT_NAME"] = "pull_request";
     process.env["GITHUB_SHA"] = "100912429fab4cb230e66ffb11e738ac5194e73a";
-    const result = await actionsUtil.determineMergeBaseCommitOid(path.join(__dirname, "../../i-dont-exist"));
+    const result = await actionsUtil.determineBaseBranchHeadCommitOid(path.join(__dirname, "../../i-dont-exist"));
     t.deepEqual(result, undefined);
     t.deepEqual(1, infoStub.callCount);
-    t.assert(infoStub.firstCall.args[0].startsWith("Failed to call git to determine merge base."));
+    t.assert(infoStub.firstCall.args[0].startsWith("git call failed. Will calculate the base branch SHA on the server. Error: "));
+    t.assert(!infoStub.firstCall.args[0].endsWith("The checkout path provided to the action does not appear to be a git repository."));
     infoStub.restore();
 });
 //# sourceMappingURL=actions-util.test.js.map

lib/analyze-action-env.test.js

@@ -77,6 +77,7 @@ const util = __importStar(require("./util"));
         process.env["CODEQL_RAM"] = "4992";
         const runFinalizeStub = sinon.stub(analyze, "runFinalize");
         const runQueriesStub = sinon.stub(analyze, "runQueries");
+        // eslint-disable-next-line @typescript-eslint/no-require-imports
         const analyzeAction = require("./analyze-action");
         // When analyze-action.ts loads, it runs an async function from the top
         // level but does not wait for it to finish. To ensure that calls to

lib/analyze-action-env.test.js.map

@@ -1 +1 @@
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lib/analyze-action-input.test.js

@@ -77,6 +77,7 @@ const util = __importStar(require("./util"));
         optionalInputStub.withArgs("ram").returns("3012");
         const runFinalizeStub = sinon.stub(analyze, "runFinalize");
         const runQueriesStub = sinon.stub(analyze, "runQueries");
+        // eslint-disable-next-line @typescript-eslint/no-require-imports
         const analyzeAction = require("./analyze-action");
         // When analyze-action.ts loads, it runs an async function from the top
         // level but does not wait for it to finish. To ensure that calls to

lib/analyze-action-input.test.js.map

@@ -1 +1 @@
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lib/analyze-action-post-helper.js

@@ -1,45 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.run = void 0;
-const core = __importStar(require("@actions/core"));
-const actionsUtil = __importStar(require("./actions-util"));
-const config_utils_1 = require("./config-utils");
-const logging_1 = require("./logging");
-async function run(uploadSarifDebugArtifact) {
-    const logger = (0, logging_1.getActionsLogger)();
-    const config = await (0, config_utils_1.getConfig)(actionsUtil.getTemporaryDirectory(), logger);
-    if (config === undefined) {
-        throw new Error("Config file could not be found at expected location. Did the 'init' action fail to start?");
-    }
-    // Upload Actions SARIF artifacts for debugging
-    if (config?.debugMode) {
-        core.info("Debug mode is on. Uploading available SARIF files as Actions debugging artifact...");
-        const outputDir = actionsUtil.getRequiredInput("output");
-        await uploadSarifDebugArtifact(config, outputDir);
-    }
-}
-exports.run = run;
-//# sourceMappingURL=analyze-action-post-helper.js.map

lib/analyze-action-post-helper.js.map

@@ -1 +0,0 @@
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lib/analyze-action-post-helper.test.js

@@ -1,73 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const ava_1 = __importDefault(require("ava"));
-const sinon = __importStar(require("sinon"));
-const actionsUtil = __importStar(require("./actions-util"));
-const analyzeActionPostHelper = __importStar(require("./analyze-action-post-helper"));
-const configUtils = __importStar(require("./config-utils"));
-const testing_utils_1 = require("./testing-utils");
-const util = __importStar(require("./util"));
-(0, testing_utils_1.setupTests)(ava_1.default);
-(0, ava_1.default)("post: analyze action with debug mode off", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        process.env["RUNNER_TEMP"] = tmpDir;
-        const gitHubVersion = {
-            type: util.GitHubVariant.DOTCOM,
-        };
-        sinon.stub(configUtils, "getConfig").resolves({
-            debugMode: false,
-            gitHubVersion,
-            languages: [],
-            packs: [],
-        });
-        const uploadSarifSpy = sinon.spy();
-        await analyzeActionPostHelper.run(uploadSarifSpy);
-        t.assert(uploadSarifSpy.notCalled);
-    });
-});
-(0, ava_1.default)("post: analyze action with debug mode on", async (t) => {
-    return await util.withTmpDir(async (tmpDir) => {
-        process.env["RUNNER_TEMP"] = tmpDir;
-        const gitHubVersion = {
-            type: util.GitHubVariant.DOTCOM,
-        };
-        sinon.stub(configUtils, "getConfig").resolves({
-            debugMode: true,
-            gitHubVersion,
-            languages: [],
-            packs: [],
-        });
-        const requiredInputStub = sinon.stub(actionsUtil, "getRequiredInput");
-        requiredInputStub.withArgs("output").returns("fake-output-dir");
-        const uploadSarifSpy = sinon.spy();
-        await analyzeActionPostHelper.run(uploadSarifSpy);
-        t.assert(uploadSarifSpy.called);
-    });
-});
-//# sourceMappingURL=analyze-action-post-helper.test.js.map

lib/analyze-action-post-helper.test.js.map

@@ -1 +0,0 @@
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lib/analyze-action-post.js

@@ -29,19 +29,33 @@ Object.defineProperty(exports, "__esModule", { value: true });
  * other `post:` hooks.
  */
 const core = __importStar(require("@actions/core"));
-const analyzeActionPostHelper = __importStar(require("./analyze-action-post-helper"));
+const actions_util_1 = require("./actions-util");
+const api_client_1 = require("./api-client");
+const config_utils_1 = require("./config-utils");
 const debugArtifacts = __importStar(require("./debug-artifacts"));
-const uploadSarifActionPostHelper = __importStar(require("./upload-sarif-action-post-helper"));
+const environment_1 = require("./environment");
+const feature_flags_1 = require("./feature-flags");
+const logging_1 = require("./logging");
+const repository_1 = require("./repository");
 const util_1 = require("./util");
 async function runWrapper() {
     try {
-        await analyzeActionPostHelper.run(debugArtifacts.uploadSarifDebugArtifact);
-        // Also run the upload-sarif post action since we're potentially running
-        // the same steps in the analyze action.
-        await uploadSarifActionPostHelper.uploadArtifacts(debugArtifacts.uploadDebugArtifacts);
+        const logger = (0, logging_1.getActionsLogger)();
+        const gitHubVersion = await (0, api_client_1.getGitHubVersion)();
+        (0, util_1.checkGitHubVersionInRange)(gitHubVersion, logger);
+        const repositoryNwo = (0, repository_1.parseRepositoryNwo)((0, util_1.getRequiredEnvParam)("GITHUB_REPOSITORY"));
+        const features = new feature_flags_1.Features(gitHubVersion, repositoryNwo, (0, actions_util_1.getTemporaryDirectory)(), logger);
+        // Upload SARIF artifacts if we determine that this is a first-party analysis run.
+        // For third-party runs, this artifact will be uploaded in the `upload-sarif-post` step.
+        if (process.env[environment_1.EnvVar.INIT_ACTION_HAS_RUN] === "true") {
+            const config = await (0, config_utils_1.getConfig)((0, actions_util_1.getTemporaryDirectory)(), logger);
+            if (config !== undefined) {
+                await (0, logging_1.withGroup)("Uploading combined SARIF debug artifact", () => debugArtifacts.uploadCombinedSarifArtifacts(logger, config.gitHubVersion.type, features));
+            }
+        }
     }
     catch (error) {
-        core.setFailed(`analyze post-action step failed: ${(0, util_1.wrapError)(error).message}`);
+        core.setFailed(`analyze post-action step failed: ${(0, util_1.getErrorMessage)(error)}`);
     }
 }
 void runWrapper();