Merge pull request #319 from github/simon-engledew/lint-workspace

Validate the codeql-action workspace for common errors

.eslintignore

@@ -0,0 +1,5 @@
+**/webpack.config.js
+lib/**
+runner/dist/**
+src/testdata/**
+tests/**

.eslintrc.json

@@ -0,0 +1,55 @@
+
+{
+    "parser": "@typescript-eslint/parser",
+    "parserOptions": {
+        "project": "./tsconfig.json"
+    },
+    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
+    "extends": [
+        "eslint:recommended",
+        "plugin:@typescript-eslint/recommended",
+        "plugin:@typescript-eslint/recommended-requiring-type-checking",
+        "plugin:github/recommended",
+        "plugin:github/typescript"
+    ],
+    "rules": {
+        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
+        "import/extensions": "error",
+        "import/no-amd": "error",
+        "import/no-commonjs": "error",
+        "import/no-dynamic-require": "error",
+        "import/no-extraneous-dependencies": ["error"],
+        "import/no-namespace": "off",
+        "import/no-unresolved": "error",
+        "import/no-webpack-loader-syntax": "error",
+        "import/order": ["error", {
+            "alphabetize": {"order": "asc"},
+            "newlines-between": "always"
+        }],
+        "no-async-foreach/no-async-foreach": "error",
+        "no-console": "off",
+        "no-sequences": "error",
+        "no-shadow": "off",
+        "@typescript-eslint/no-shadow": ["error"],
+        "one-var": ["error", "never"]
+    },
+    "overrides": [{
+        // "temporarily downgraded during transition to eslint
+        "files": "**",
+        "rules": {
+            "@typescript-eslint/ban-types": "off",
+            "@typescript-eslint/explicit-module-boundary-types": "off",
+            "@typescript-eslint/no-explicit-any": "off",
+            "@typescript-eslint/no-unsafe-assignment": "off",
+            "@typescript-eslint/no-unsafe-call": "off",
+            "@typescript-eslint/no-unsafe-member-access": "off",
+            "@typescript-eslint/no-unsafe-return": "off",
+            "@typescript-eslint/no-unused-vars": "off",
+            "@typescript-eslint/no-var-requires": "off",
+            "@typescript-eslint/prefer-regexp-exec": "off",
+            "@typescript-eslint/require-await": "off",
+            "@typescript-eslint/restrict-template-expressions": "off",
+            "func-style": "off"
+        }
+    }]
+}

.github/ISSUE_TEMPLATE/config.yml

@@ -1,5 +1,5 @@
 blank_issues_enabled: true
 contact_links:
   - name: Contact GitHub Support
-    url: https://support.github.com/contact?subject=Code+Scanning+Beta+Support&tags=code-scanning-support
-    about: Contact Support about code scanning
+    url: https://support.github.com/request
+    about: Contact Support 

.github/update-release-branch.py

@@ -123,8 +123,8 @@ def get_pr_for_commit(repo, commit):
   if prs.totalCount > 0:
     # In the case that there are multiple PRs, return the earliest one
     prs = list(prs)
-    sorted(prs, key=lambda pr: int(pr.number))
-    return prs[0]
+    sorted_prs = sorted(prs, key=lambda pr: int(pr.number))
+    return sorted_prs[0]
   else:
     return None
 

.github/workflows/cli.yml

@@ -1,18 +0,0 @@
-name: "CodeScanning CLI"
-
-on: [push, pull_request]
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v2
-
-    # Build the CLI
-    - name: Build CLI
-      run: npm run build-cli
-
-    # Upload an empty SARIF file
-    - name: Upload with CLI
-      run: node cli/code-scanning-cli.js upload --sarif-file src/testdata/empty-sarif.sarif --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_API_URL --github-auth ${{ github.token }}

.github/workflows/codeql.yml

@@ -1,6 +1,9 @@
 name: "CodeQL action"
 
-on: [push, pull_request]
+on:
+  push:
+    branches: [main, v1]
+  pull_request:
 
 jobs:
   build:
@@ -11,18 +14,12 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-      with:
-        # Must fetch at least the immediate parents so that if this is
-        # a pull request then we can checkout the head of the pull request.
-        fetch-depth: 2
-
-    # If this run was triggered by a pull request event then checkout
-    # the head of the pull request instead of the merge commit.
-    - run: git checkout HEAD^2
-      if: ${{ github.event_name == 'pull_request' }}
-
     - uses: ./init
+      id: init
       with:
         languages: javascript
         config-file: ./.github/codeql/codeql-config.yml
+    # confirm steps.init.outputs.codeql-path points to the codeql binary
+    - name: Print CodeQL Version
+      run: ${{steps.init.outputs.codeql-path}} version --format=json
     - uses: ./analyze

.github/workflows/integration-testing.yml

@@ -1,6 +1,9 @@
 name: "Integration Testing"
 
-on: [push, pull_request]
+on:
+  push:
+    branches: [main, v1]
+  pull_request:
 
 jobs:
   multi-language-repo_test-autodetect-languages:
@@ -41,6 +44,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, windows-latest, macos-latest]
+        tools: [~, latest]
     runs-on: ${{ matrix.os }}
 
     steps:
@@ -53,6 +57,7 @@ jobs:
         mv ../action/tests/multi-language-repo/{*,.github} .
     - uses: ./../action/init
       with:
+        tools: ${{ matrix.tools }}
         languages: cpp,csharp,java,javascript,python
         config-file: github/codeql-action/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
     - name: Build code
@@ -93,6 +98,37 @@ jobs:
       env:
         TEST_MODE: true
 
+  go-custom-tracing:
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+    runs-on: ${{ matrix.os }}
+    env:
+      CODEQL_EXTRACTOR_GO_BUILD_TRACING: "on"
+
+    steps:
+    - uses: actions/setup-go@v2
+      if: ${{ matrix.os ==  'macos-latest' }}
+      with:
+        go-version: '^1.13.1'
+    - uses: actions/checkout@v2
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+    - uses: ./../action/init
+      with:
+        languages: go
+    - name: Build code
+      shell: bash
+      run: go build main.go
+    - uses: ./../action/analyze
+      env:
+        TEST_MODE: true
+
   multi-language-repo_rubocop:
     runs-on: ubuntu-latest
 
@@ -150,3 +186,299 @@ jobs:
     - uses: ./../action/analyze
       env:
         TEST_MODE: true
+
+  runner-analyze-javascript-ubuntu:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Build runner
+      run: |
+        cd runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        # Pass --config-file here, but not for other jobs in this workflow.
+        # This means we're testing the config file parsing in the runner
+        # but not slowing down all jobs unnecessarily as it doesn't add much
+        # testing the parsing on different operating systems and languages.
+        runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Run analyze
+      run: |
+        runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-javascript-windows:
+    runs-on: windows-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Build runner
+      run: |
+        cd runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages javascript --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Run analyze
+      run: |
+        runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-javascript-macos:
+    runs-on: macos-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Build runner
+      run: |
+        cd runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages javascript --config-file ./.github/codeql/codeql-config.yml --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Run analyze
+      run: |
+        runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-csharp-ubuntu:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      run: |
+        . ./codeql-runner/codeql-env.sh
+        dotnet build
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-csharp-windows:
+    runs-on: windows-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      shell: powershell
+      run: |
+        cat ./codeql-runner/codeql-env.sh | Invoke-Expression
+        dotnet build
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-csharp-macos:
+    runs-on: macos-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      shell: bash
+      run: |
+        . ./codeql-runner/codeql-env.sh
+        dotnet build
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+
+  runner-analyze-csharp-autobuild-ubuntu:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-linux init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      run: |
+        ../action/runner/dist/codeql-runner-linux autobuild
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-linux analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-csharp-autobuild-windows:
+    runs-on: windows-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-win.exe init --repository $Env:GITHUB_REPOSITORY --languages csharp --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      shell: powershell
+      run: |
+        ../action/runner/dist/codeql-runner-win.exe autobuild
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-win.exe analyze --repository $Env:GITHUB_REPOSITORY --commit $Env:GITHUB_SHA --ref $Env:GITHUB_REF --github-url $Env:GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-analyze-csharp-autobuild-macos:
+    runs-on: macos-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Move codeql-action
+      shell: bash
+      run: |
+        mkdir ../action
+        mv * .github ../action/
+        mv ../action/tests/multi-language-repo/{*,.github} .
+
+    - name: Build runner
+      run: |
+        cd ../action/runner
+        npm install
+        npm run build-runner
+
+    - name: Run init
+      run: |
+        ../action/runner/dist/codeql-runner-macos init --repository $GITHUB_REPOSITORY --languages csharp --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+
+    - name: Build code
+      shell: bash
+      run: |
+        ../action/runner/dist/codeql-runner-macos autobuild
+
+    - name: Run analyze
+      run: |
+        ../action/runner/dist/codeql-runner-macos analyze --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}
+      env:
+        TEST_MODE: true
+
+  runner-upload-sarif:
+    runs-on: ubuntu-latest
+
+    if: ${{ github.event_name != 'pull_request' || github.event.pull_request.base.repo.id == github.event.pull_request.head.repo.id }}
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Build runner
+      run: |
+        cd runner
+        npm install
+        npm run build-runner
+
+    - name: Upload with runner
+      run: |
+        # Deliberately don't use TEST_MODE here. This is specifically testing
+        # the compatibility with the API.
+        runner/dist/codeql-runner-linux upload --sarif-file src/testdata/empty-sarif.sarif --repository $GITHUB_REPOSITORY --commit $GITHUB_SHA --ref $GITHUB_REF --github-url $GITHUB_SERVER_URL --github-auth ${{ github.token }}

.github/workflows/pr-checks.yml

@@ -1,21 +1,24 @@
 name: "PR checks"
 
-on: [push, pull_request]
+on:
+  push:
+    branches: [main, v1]
+  pull_request:
 
 jobs:
-  tslint:
+  lint-js:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
-    - name: tslint
+    - uses: actions/checkout@v2
+    - name: Run Lint
       run: npm run-script lint
 
   check-js:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v2
     - name: Check generated JavaScript
       run: |
         # Sanity check that repo is clean to start with
@@ -24,6 +27,8 @@ jobs:
           >&2 echo "Failed: Repo should be clean before testing!"
           exit 1
         fi
+        # Wipe the lib directory incase there are extra unnecessary files in there
+        rm -rf lib
         # Generate the JavaScript files
         npm run-script build
         # Check that repo is still clean
@@ -39,7 +44,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v2
     - name: Check node modules up to date
       run: |
         # Sanity check that repo is clean to start with
@@ -48,7 +53,6 @@ jobs:
           >&2 echo "Failed: Repo should be clean before testing!"
           exit 1
         fi
-
         # Reinstall modules and then clean to remove absolute paths
         # Use 'npm ci' instead of 'npm install' as this is intended to be reproducible
         npm ci
@@ -63,9 +67,12 @@ jobs:
         echo "Success: node_modules are up to date"
 
   npm-test:
-    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        os: [ubuntu-latest,macos-latest]
+    runs-on: ${{ matrix.os }}
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v2
     - name: npm run-script test
-      run: npm run-script test
+      run: npm run-script test

.github/workflows/python-deps.yml

@@ -0,0 +1,133 @@
+name: Test Python Package Installation on Linux and Mac
+
+on:
+  push:
+    branches: [main, v1]
+  pull_request:
+
+jobs:
+
+  test-setup-python-scripts:
+    runs-on: ${{ matrix.os }}
+    strategy:
+        fail-fast: false
+        matrix:
+          os: [ubuntu-latest, macos-latest]
+          include:
+            - test_dir: python-setup/tests/pipenv/requests-2
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 2
+            - test_dir: python-setup/tests/pipenv/requests-3
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 3
+
+            - test_dir: python-setup/tests/poetry/requests-2
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 2
+            - test_dir: python-setup/tests/poetry/requests-3
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 3
+
+            - test_dir: python-setup/tests/requirements/requests-2
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 2
+            - test_dir: python-setup/tests/requirements/requests-3
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 3
+
+            - test_dir: python-setup/tests/setup_py/requests-2
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 2
+            - test_dir: python-setup/tests/setup_py/requests-3
+              test_script: $GITHUB_WORKSPACE/python-setup/tests/check_requests_123.sh 3
+
+            # This one shouldn't fail, but also won't install packages
+            - test_dir: python-setup/tests/requirements/non-standard-location
+              test_script: test -z $LGTM_INDEX_IMPORT_PATH
+
+    steps:
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - uses: actions/checkout@v2
+
+    - name: Initialize CodeQL
+      uses: ./init
+      id: init
+      with:
+        tools: latest
+        languages: python
+        setup-python-dependencies: false
+
+    - name: Test Auto Package Installation
+      run: |
+        set -x
+        $GITHUB_WORKSPACE/python-setup/install_tools.sh
+
+        cd $GITHUB_WORKSPACE/${{ matrix.test_dir }}
+
+        case ${{ matrix.os }} in
+            ubuntu-latest*)     basePath="/opt";;
+            macos-latest*)    basePath="/Users/runner";;
+        esac
+        echo ${basePath}
+
+        $GITHUB_WORKSPACE/python-setup/auto_install_packages.py "$(dirname ${{steps.init.outputs.codeql-path}})"
+    - name: Setup for extractor
+      run: |
+        echo $CODEQL_PYTHON
+        # only run if $CODEQL_PYTHON is set
+        if [ ! -z $CODEQL_PYTHON ]; then
+            $GITHUB_WORKSPACE/python-setup/tests/from_python_exe.py $CODEQL_PYTHON;
+        fi
+    - name: Verify packages installed
+      run: |
+        ${{ matrix.test_script }}
+
+  test-setup-python-scripts-windows:
+    runs-on: windows-latest
+    strategy:
+        fail-fast: false
+        matrix:
+          include:
+            - test_dir: python-setup/tests/pipenv/requests-2
+              python_version: 2
+            - test_dir: python-setup/tests/pipenv/requests-3
+              python_version: 3
+
+            - test_dir: python-setup/tests/poetry/requests-2
+              python_version: 2
+            - test_dir: python-setup/tests/poetry/requests-3
+              python_version: 3
+
+            - test_dir: python-setup/tests/requirements/requests-2
+              python_version: 2
+            - test_dir: python-setup/tests/requirements/requests-3
+              python_version: 3
+
+            - test_dir: python-setup/tests/setup_py/requests-2
+              python_version: 2
+            - test_dir: python-setup/tests/setup_py/requests-3
+              python_version: 3
+
+    steps:
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - uses: actions/checkout@v2
+
+    - name: Initialize CodeQL
+      uses: ./init
+      with:
+        tools: latest
+        languages: python
+        setup-python-dependencies: false
+
+    - name: Test Auto Package Installation
+      run: |
+        $cmd = $Env:GITHUB_WORKSPACE + "\\python-setup\\install_tools.ps1"
+        powershell -File $cmd
+
+        cd $Env:GITHUB_WORKSPACE\\${{ matrix.test_dir }}
+        $DefaultsPath = Join-Path (Join-Path $Env:GITHUB_WORKSPACE "src") "defaults.json"
+        $CodeQLBundleName = (Get-Content -Raw -Path $DefaultsPath | ConvertFrom-Json).bundleVersion
+        $CodeQLVersion = "0.0.0-" + $CodeQLBundleName.split("-")[-1]
+        py -3 $Env:GITHUB_WORKSPACE\\python-setup\\auto_install_packages.py C:\\hostedtoolcache\\windows\\CodeQL\\$CodeQLVersion\\x64\\codeql
+    - name: Setup for extractor
+      run: |
+        echo $Env:CODEQL_PYTHON
+
+        py -3 $Env:GITHUB_WORKSPACE\\python-setup\\tests\\from_python_exe.py $Env:CODEQL_PYTHON
+    - name: Verify packages installed
+      run: |
+        $cmd = $Env:GITHUB_WORKSPACE + "\\python-setup\\tests\\check_requests_123.ps1"
+        powershell -File $cmd ${{ matrix.python_version }}

.github/workflows/release-runner.yml

@@ -0,0 +1,54 @@
+name: Release runner
+
+on:
+  workflow_dispatch:
+    inputs:
+      bundle-tag:
+        description: 'Tag of the bundle release (e.g., "codeql-bundle-20200826")'
+        required: false
+
+jobs:
+  release-runner:
+    runs-on: ubuntu-latest
+    env:
+      RELEASE_TAG: "${{ github.event.inputs.bundle-tag }}"
+
+    strategy:
+      matrix:
+        extension: ["linux", "macos", "win.exe"]
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Build runner
+        run: |
+          cd runner
+          npm install
+          npm run build-runner
+
+      - uses: actions/upload-artifact@v2
+        with:
+          name: codeql-runner-${{matrix.extension}}
+          path: runner/dist/codeql-runner-${{matrix.extension}}
+
+      - name: Resolve Upload URL for the release
+        if: ${{ github.event.inputs.bundle-tag != null }}
+        id: save_url
+        run: |
+          UPLOAD_URL=$(curl -sS \
+                "https://api.github.com/repos/${GITHUB_REPOSITORY}/releases/tags/${RELEASE_TAG}" \
+                -H "Accept: application/json" \
+                -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" | jq .upload_url | sed s/\"//g)
+          echo ${UPLOAD_URL}
+          echo "::set-output name=upload_url::${UPLOAD_URL}"
+
+      - name: Upload Platform Package
+        if: ${{ github.event.inputs.bundle-tag != null }}
+        uses: actions/upload-release-asset@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          upload_url: ${{ steps.save_url.outputs.upload_url }}
+          asset_path: runner/dist/codeql-runner-${{matrix.extension}}
+          asset_name: codeql-runner-${{matrix.extension}}
+          asset_content_type: application/octet-stream

.github/workflows/split.yml

@@ -0,0 +1,73 @@
+#
+# Split the CodeQL Bundle into platform bundles
+#
+# Instructions:
+#  1. Upload the new codeql-bundle (codeql-bundle.tar.gz) as an asset of the
+#     release (codeql-bundle-20200826)
+#  2. Take note of the CLI Release used by the bundle (e.g., v2.2.5)
+#  3. Manually launch this workflow file (via the Actions UI) specifying
+#     - The CLI Release (e.g., v2.2.5)
+#     - The release tag (e.g., codeql-bundle-20200826)
+#  4. If everything succeeds you should see 3 new assets.
+#
+
+name: Split Bundle
+
+on:
+ workflow_dispatch:
+    inputs:
+      cli-release:
+        description: 'CodeQL CLI Release (e.g., "v2.2.5")'
+        required: true
+      bundle-tag:
+        description: 'Tag of the bundle release (e.g., "codeql-bundle-20200826")'
+        required: true
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    env:
+      CLI_RELEASE: "${{ github.event.inputs.cli-release }}"
+      RELEASE_TAG: "${{ github.event.inputs.bundle-tag }}"
+
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: ["linux64", "osx64", "win64"]
+
+    steps:
+      - name: Resolve Upload URL for the release
+        id: save_url
+        run: |
+          UPLOAD_URL=$(curl -sS \
+               "https://api.github.com/repos/${GITHUB_REPOSITORY}/releases/tags/${RELEASE_TAG}" \
+               -H "Accept: application/json" \
+               -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" | jq .upload_url | sed s/\"//g)
+          echo ${UPLOAD_URL}
+          echo "::set-output name=upload_url::${UPLOAD_URL}"
+
+      - name: Download CodeQL CLI and Bundle
+        run: |
+          wget --no-verbose "https://github.com/${GITHUB_REPOSITORY}/releases/download/${RELEASE_TAG}/codeql-bundle.tar.gz"
+          wget --no-verbose "https://github.com/github/codeql-cli-binaries/releases/download/${CLI_RELEASE}/codeql-${{matrix.platform}}.zip"
+
+      - name: Create Platform Package
+        # Replace the codeql-binaries with the platform specific ones
+        run: |
+          gunzip codeql-bundle.tar.gz
+          tar -f codeql-bundle.tar --delete codeql
+          unzip -q codeql-${{matrix.platform}}.zip
+          tar -f codeql-bundle.tar --append codeql
+          gzip codeql-bundle.tar
+          mv codeql-bundle.tar.gz codeql-bundle-${{matrix.platform}}.tar.gz
+          du -sh codeql-bundle-${{matrix.platform}}.tar.gz
+
+      - name: Upload Platform Package
+        uses: actions/upload-release-asset@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          upload_url: ${{ steps.save_url.outputs.upload_url }}
+          asset_path: ./codeql-bundle-${{matrix.platform}}.tar.gz
+          asset_name: codeql-bundle-${{matrix.platform}}.tar.gz
+          asset_content_type: application/tar+gzip

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -0,0 +1,43 @@
+name: Update Supported Enterprise Server Versions
+
+on:
+  schedule:
+    - cron: "0 0 * * *"
+
+jobs:
+  update-supported-enterprise-server-versions:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Setup Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.7"
+      - name: Checkout CodeQL Action
+        uses: actions/checkout@v2
+      - name: Checkout Enterprise Releases
+        uses: actions/checkout@v2
+        with:
+          repository: github/enterprise-releases
+          ssh-key: ${{ secrets.ENTERPRISE_RELEASES_SSH_KEY }}
+          path: ${{ github.workspace }}/enterprise-releases/
+      - name: Update Supported Enterprise Server Versions
+        run: |
+          cd ./.github/workflows/update-supported-enterprise-server-versions/
+          python3 -m pip install pipenv
+          pipenv install
+          pipenv run ./update.py
+          rm --recursive "$ENTERPRISE_RELEASES_PATH"
+          npm run build
+        env:
+          ENTERPRISE_RELEASES_PATH: ${{ github.workspace }}/enterprise-releases/
+      - name: Commit Changes
+        uses: peter-evans/create-pull-request@c7f493a8000b8aeb17a1332e326ba76b57cb83eb # v3.4.1
+        with:
+          commit-message: Update supported GitHub Enterprise Server versions.
+          title: Update supported GitHub Enterprise Server versions.
+          body: ""
+          author: GitHub <noreply@github.com>
+          branch: update-supported-enterprise-server-versions
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/update-supported-enterprise-server-versions/Pipfile

@@ -0,0 +1,9 @@
+[[source]]
+name = "pypi"
+url = "https://pypi.org/simple"
+verify_ssl = true
+
+[dev-packages]
+
+[packages]
+semver = "*"

.github/workflows/update-supported-enterprise-server-versions/Pipfile.lock

@@ -0,0 +1,27 @@
+{
+    "_meta": {
+        "hash": {
+            "sha256": "e3ba923dcb4888e05de5448c18a732bf40197e80fabfa051a61c01b22c504879"
+        },
+        "pipfile-spec": 6,
+        "requires": {},
+        "sources": [
+            {
+                "name": "pypi",
+                "url": "https://pypi.org/simple",
+                "verify_ssl": true
+            }
+        ]
+    },
+    "default": {
+        "semver": {
+            "hashes": [
+                "sha256:ced8b23dceb22134307c1b8abfa523da14198793d9787ac838e70e29e77458d4",
+                "sha256:fa0fe2722ee1c3f57eac478820c3a5ae2f624af8264cbdf9000c980ff7f75e3f"
+            ],
+            "index": "pypi",
+            "version": "==2.13.0"
+        }
+    },
+    "develop": {}
+}

.github/workflows/update-supported-enterprise-server-versions/update.py

@@ -0,0 +1,43 @@
+#!/usr/bin/env python3
+import datetime
+import json
+import os
+import pathlib
+
+import semver
+
+_API_COMPATIBILITY_PATH = pathlib.Path(__file__).absolute().parents[3] / "src" / "api-compatibility.json"
+_ENTERPRISE_RELEASES_PATH = pathlib.Path(os.environ["ENTERPRISE_RELEASES_PATH"])
+_RELEASE_FILE_PATH = _ENTERPRISE_RELEASES_PATH / "releases.json"
+_FIRST_SUPPORTED_RELEASE = semver.VersionInfo.parse("2.22.0") # Versions older than this did not include Code Scanning.
+
+def main():
+	api_compatibility_data = json.loads(_API_COMPATIBILITY_PATH.read_text())
+
+	releases = json.loads(_RELEASE_FILE_PATH.read_text())
+	oldest_supported_release = None
+	newest_supported_release = semver.VersionInfo.parse(api_compatibility_data["maximumVersion"] + ".0")
+
+	for release_version_string, release_data in releases.items():
+		release_version = semver.VersionInfo.parse(release_version_string + ".0")
+		if release_version < _FIRST_SUPPORTED_RELEASE:
+			continue
+
+		if release_version > newest_supported_release:
+			feature_freeze_date = datetime.date.fromisoformat(release_data["feature_freeze"])
+			if feature_freeze_date < datetime.date.today() + datetime.timedelta(weeks=2):
+				newest_supported_release = release_version
+
+		if oldest_supported_release is None or release_version < oldest_supported_release:
+			end_of_life_date = datetime.date.fromisoformat(release_data["end"])
+			if end_of_life_date > datetime.date.today():
+				oldest_supported_release = release_version
+
+	api_compatibility_data = {
+		"minimumVersion": f"{oldest_supported_release.major}.{oldest_supported_release.minor}",
+		"maximumVersion": f"{newest_supported_release.major}.{newest_supported_release.minor}",
+	}
+	_API_COMPATIBILITY_PATH.write_text(json.dumps(api_compatibility_data, sort_keys=True) + "\n")
+
+if __name__ == "__main__":
+	main()

.gitignore

@@ -1,2 +1,2 @@
-/cli/
-
+/runner/dist/
+/runner/node_modules/

CONTRIBUTING.md

@@ -36,6 +36,7 @@ It is possible to run this action locally via [act](https://github.com/nektos/ac
 
   ```bash
   CODEQL_LOCAL_RUN=true
+  GITHUB_SERVER_URL=https://github.com
 
   # Optional, for better logging
   GITHUB_JOB=<ANY_JOB_NAME>
@@ -49,6 +50,10 @@ Running locally will generate the CodeQL database and run all the queries, but i
 
 As well as the unit tests (see _Common tasks_ above), there are integration tests, defined in `.github/workflows/integration-testing.yml`.  These are run by a CI check.  Depending on the change you’re making, you may want to add a test to this file or extend an existing one.
 
+### Building the CodeQL runner
+
+Navigate to the `runner` directory and run `npm install` to install dependencies needed only for compiling the CodeQL runner. Run `npm run build-runner` to output files to the `runner/dist` directory.
+
 ## Submitting a pull request
 
 1. [Fork][fork] and clone the repository

README.md

@@ -22,7 +22,16 @@ on:
   push:
   pull_request:
   schedule:
-    - cron: '0 0 * * 0'
+    #        ┌───────────── minute (0 - 59)
+    #        │  ┌───────────── hour (0 - 23)
+    #        │  │ ┌───────────── day of the month (1 - 31)
+    #        │  │ │ ┌───────────── month (1 - 12 or JAN-DEC)
+    #        │  │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT)
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        │  │ │ │ │
+    #        *  * * * *
+    - cron: '30 1 * * 0'
 
 jobs:
   CodeQL-Build:
@@ -32,17 +41,6 @@ jobs:
     steps:
       - name: Checkout repository
         uses: actions/checkout@v2
-        with:
-          # Must fetch at least the immediate parents so that if this is
-          # a pull request then we can checkout the head of the pull request.
-          # Only include this option if you are running this workflow on pull requests.
-          fetch-depth: 2
-
-      # If this run was triggered by a pull request event then checkout
-      # the head of the pull request instead of the merge commit.
-      # Only include this step if you are running this workflow on pull requests.
-      - run: git checkout HEAD^2
-        if: ${{ github.event_name == 'pull_request' }}
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
@@ -98,7 +96,23 @@ Use the `config-file` parameter of the `init` action to enable the configuration
     config-file: ./.github/codeql/codeql-config.yml
 ```
 
-The configuration file must be located within the local repository. For information on how to write a configuration file, see "[Using a custom configuration](https://help.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#using-a-custom-configuration)."
+The configuration file must be located within the local repository. For information on how to write a configuration file, see "[Using a custom configuration file](https://help.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#using-a-custom-configuration-file)."
+
+If you only want to customise the queries used, you can specify them in your workflow instead of creating a config file, using the `queries` property of the `init` action:
+
+```yaml
+- uses: github/codeql-action/init@v1
+  with:
+    queries: <local-or-remote-query>,<another-query>
+```
+
+By default, this will override any queries specified in a config file. If you wish to use both sets of queries, prefix the list of queries in the workflow with `+`:
+
+```yaml
+- uses: github/codeql-action/init@v1
+  with:
+    queries: +<local-or-remote-query>,<another-query>
+```
 
 ## Troubleshooting
 

analyze/action.yml

@@ -16,11 +16,15 @@ inputs:
   ram:
     description: Override the amount of memory in MB to be used by CodeQL. By default, almost all the memory of the machine is used.
     required: false
+  add-snippets:
+    description: Specify whether or not to add code snippets to the output sarif file.
+    required: false
+    default: "false"
   threads:
     description: The number of threads to be used by CodeQL.
     required: false
   checkout_path:
-    description: "The path at which the analyzed repository was checked out. Used to relativeize any absolute paths in the uploaded SARIF file."
+    description: "The path at which the analyzed repository was checked out. Used to relativize any absolute paths in the uploaded SARIF file."
     required: false
     default: ${{ github.workspace }}
   token:
@@ -29,4 +33,4 @@ inputs:
     default: ${{ toJson(matrix) }}
 runs:
   using: 'node12'
-  main: '../lib/finalize-db.js'
+  main: '../lib/analyze-action.js'

autobuild/action.yml

@@ -8,4 +8,4 @@ inputs:
     default: ${{ toJson(matrix) }}
 runs:
   using: 'node12'
-  main: '../lib/autobuild.js'
+  main: '../lib/autobuild-action.js'

init/action.yml

@@ -1,5 +1,5 @@
 name: 'CodeQL: Init'
-description: 'Setup the CodeQL tracer'
+description: 'Set up CodeQL'
 author: 'GitHub'
 inputs:
   tools:
@@ -16,6 +16,16 @@ inputs:
   config-file:
     description: Path of the config file to use
     required: false
+  queries:
+    description: Comma-separated list of additional queries to run. By default, this overrides the same setting in a configuration file; prefix with "+" to use both sets of queries.
+    required: false
+  setup-python-dependencies:
+    description: Try to auto-install your python dependencies
+    required: true
+    default: 'true'
+outputs:
+  codeql-path:
+    description: The path of the CodeQL binary used for analysis
 runs:
   using: 'node12'
-  main: '../lib/setup-tracer.js'
+  main: '../lib/init-action.js'

lib/actions-util.js

@@ -0,0 +1,461 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const core = __importStar(require("@actions/core"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const safeWhich = __importStar(require("@chrisgavin/safe-which"));
+const yaml = __importStar(require("js-yaml"));
+const api = __importStar(require("./api-client"));
+const sharedEnv = __importStar(require("./shared-environment"));
+const util_1 = require("./util");
+/**
+ * Wrapper around core.getInput for inputs that always have a value.
+ * Also see getOptionalInput.
+ *
+ * This allows us to get stronger type checking of required/optional inputs
+ * and make behaviour more consistent between actions and the runner.
+ */
+function getRequiredInput(name) {
+    return core.getInput(name, { required: true });
+}
+exports.getRequiredInput = getRequiredInput;
+/**
+ * Wrapper around core.getInput that converts empty inputs to undefined.
+ * Also see getRequiredInput.
+ *
+ * This allows us to get stronger type checking of required/optional inputs
+ * and make behaviour more consistent between actions and the runner.
+ */
+function getOptionalInput(name) {
+    const value = core.getInput(name);
+    return value.length > 0 ? value : undefined;
+}
+exports.getOptionalInput = getOptionalInput;
+/**
+ * Get an environment parameter, but throw an error if it is not set.
+ */
+function getRequiredEnvParam(paramName) {
+    const value = process.env[paramName];
+    if (value === undefined || value.length === 0) {
+        throw new Error(`${paramName} environment variable must be set`);
+    }
+    core.debug(`${paramName}=${value}`);
+    return value;
+}
+exports.getRequiredEnvParam = getRequiredEnvParam;
+/**
+ * Ensures all required environment variables are set in the context of a local run.
+ */
+function prepareLocalRunEnvironment() {
+    if (!util_1.isLocalRun()) {
+        return;
+    }
+    core.debug("Action is running locally.");
+    if (!process.env.GITHUB_JOB) {
+        core.exportVariable("GITHUB_JOB", "UNKNOWN-JOB");
+    }
+    if (!process.env.CODEQL_ACTION_ANALYSIS_KEY) {
+        core.exportVariable("CODEQL_ACTION_ANALYSIS_KEY", `LOCAL-RUN:${process.env.GITHUB_JOB}`);
+    }
+}
+exports.prepareLocalRunEnvironment = prepareLocalRunEnvironment;
+/**
+ * Gets the SHA of the commit that is currently checked out.
+ */
+exports.getCommitOid = async function () {
+    // Try to use git to get the current commit SHA. If that fails then
+    // log but otherwise silently fall back to using the SHA from the environment.
+    // The only time these two values will differ is during analysis of a PR when
+    // the workflow has changed the current commit to the head commit instead of
+    // the merge commit, which must mean that git is available.
+    // Even if this does go wrong, it's not a huge problem for the alerts to
+    // reported on the merge commit.
+    try {
+        let commitOid = "";
+        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), ["rev-parse", "HEAD"], {
+            silent: true,
+            listeners: {
+                stdout: (data) => {
+                    commitOid += data.toString();
+                },
+                stderr: (data) => {
+                    process.stderr.write(data);
+                },
+            },
+        }).exec();
+        return commitOid.trim();
+    }
+    catch (e) {
+        core.info(`Failed to call git to get current commit. Continuing with data from environment: ${e}`);
+        return getRequiredEnvParam("GITHUB_SHA");
+    }
+};
+function isObject(o) {
+    return o !== null && typeof o === "object";
+}
+var MissingTriggers;
+(function (MissingTriggers) {
+    MissingTriggers[MissingTriggers["None"] = 0] = "None";
+    MissingTriggers[MissingTriggers["Push"] = 1] = "Push";
+    MissingTriggers[MissingTriggers["PullRequest"] = 2] = "PullRequest";
+})(MissingTriggers || (MissingTriggers = {}));
+function toCodedErrors(errors) {
+    return Object.entries(errors).reduce((acc, [key, value]) => {
+        acc[key] = { message: value, code: key };
+        return acc;
+    }, {});
+}
+exports.WorkflowErrors = toCodedErrors({
+    MismatchedBranches: `Please make sure that every branch in on.pull_request is also in on.push so that Code Scanning can compare pull requests against the state of the base branch.`,
+    MissingHooks: `Please specify on.push and on.pull_request hooks so that Code Scanning can compare pull requests against the state of the base branch.`,
+    MissingPullRequestHook: `Please specify an on.pull_request hook so that Code Scanning is run against pull requests.`,
+    MissingPushHook: `Please specify an on.push hook so that Code Scanning can compare pull requests against the state of the base branch.`,
+    PathsSpecified: `Using on.push.paths can prevent Code Scanning annotating new alerts in your pull requests.`,
+    PathsIgnoreSpecified: `Using on.push.paths-ignore can prevent Code Scanning annotating new alerts in your pull requests.`,
+    CheckoutWrongHead: `git checkout HEAD^2 is no longer necessary. Please remove this step as Code Scanning recommends analyzing the merge commit for best results.`,
+});
+function validateWorkflow(doc) {
+    var _a, _b, _c, _d, _e;
+    const errors = [];
+    // .jobs[key].steps[].run
+    for (const job of Object.values(((_a = doc) === null || _a === void 0 ? void 0 : _a.jobs) || {})) {
+        for (const step of ((_b = job) === null || _b === void 0 ? void 0 : _b.steps) || []) {
+            // this was advice that we used to give in the README
+            // we actually want to run the analysis on the merge commit
+            // to produce results that are more inline with expectations
+            // (i.e: this is what will happen if you merge this PR)
+            // and avoid some race conditions
+            if (((_c = step) === null || _c === void 0 ? void 0 : _c.run) === "git checkout HEAD^2") {
+                errors.push(exports.WorkflowErrors.CheckoutWrongHead);
+            }
+        }
+    }
+    let missing = MissingTriggers.None;
+    if (doc.on === undefined) {
+        missing = MissingTriggers.Push | MissingTriggers.PullRequest;
+    }
+    else if (typeof doc.on === "string") {
+        switch (doc.on) {
+            case "push":
+                missing = MissingTriggers.PullRequest;
+                break;
+            case "pull_request":
+                missing = MissingTriggers.Push;
+                break;
+            default:
+                missing = MissingTriggers.Push | MissingTriggers.PullRequest;
+                break;
+        }
+    }
+    else if (Array.isArray(doc.on)) {
+        if (!doc.on.includes("push")) {
+            missing = missing | MissingTriggers.Push;
+        }
+        if (!doc.on.includes("pull_request")) {
+            missing = missing | MissingTriggers.PullRequest;
+        }
+    }
+    else if (isObject(doc.on)) {
+        if (!Object.prototype.hasOwnProperty.call(doc.on, "pull_request")) {
+            missing = missing | MissingTriggers.PullRequest;
+        }
+        if (!Object.prototype.hasOwnProperty.call(doc.on, "push")) {
+            missing = missing | MissingTriggers.Push;
+        }
+        else {
+            const paths = (_d = doc.on.push) === null || _d === void 0 ? void 0 : _d.paths;
+            // if you specify paths or paths-ignore you can end up with commits that have no baseline
+            // if they didn't change any files
+            // currently we cannot go back through the history and find the most recent baseline
+            if (Array.isArray(paths) && paths.length > 0) {
+                errors.push(exports.WorkflowErrors.PathsSpecified);
+            }
+            const pathsIgnore = (_e = doc.on.push) === null || _e === void 0 ? void 0 : _e["paths-ignore"];
+            if (Array.isArray(pathsIgnore) && pathsIgnore.length > 0) {
+                errors.push(exports.WorkflowErrors.PathsIgnoreSpecified);
+            }
+        }
+        if (doc.on.push) {
+            const push = doc.on.push.branches || [];
+            if (doc.on.pull_request) {
+                const pull_request = doc.on.pull_request.branches || [];
+                const difference = pull_request.filter((value) => !push.includes(value));
+                if (difference.length > 0) {
+                    // there are branches in pull_request that may not have a baseline
+                    // because we are not building them on push
+                    errors.push(exports.WorkflowErrors.MismatchedBranches);
+                }
+            }
+            else if (push.length > 0) {
+                // push is set up to run on a subset of branches
+                // and you could open a PR against a branch with no baseline
+                errors.push(exports.WorkflowErrors.MismatchedBranches);
+            }
+        }
+    }
+    switch (missing) {
+        case MissingTriggers.PullRequest | MissingTriggers.Push:
+            errors.push(exports.WorkflowErrors.MissingHooks);
+            break;
+        case MissingTriggers.PullRequest:
+            errors.push(exports.WorkflowErrors.MissingPullRequestHook);
+            break;
+        case MissingTriggers.Push:
+            errors.push(exports.WorkflowErrors.MissingPushHook);
+            break;
+    }
+    return errors;
+}
+exports.validateWorkflow = validateWorkflow;
+async function getWorkflowErrors() {
+    const workflow = await getWorkflow();
+    if (workflow === undefined) {
+        return [];
+    }
+    return validateWorkflow(workflow);
+}
+exports.getWorkflowErrors = getWorkflowErrors;
+function formatWorkflowErrors(errors) {
+    const issuesWere = errors.length === 1 ? "issue was" : "issues were";
+    const errorsList = errors.map((e) => e.message).join(" ");
+    return `${errors.length} ${issuesWere} detected with this workflow: ${errorsList}`;
+}
+exports.formatWorkflowErrors = formatWorkflowErrors;
+function formatWorkflowCause(errors) {
+    if (errors.length === 0) {
+        return undefined;
+    }
+    return errors.map((e) => e.code).join(",");
+}
+exports.formatWorkflowCause = formatWorkflowCause;
+async function getWorkflow() {
+    const relativePath = await getWorkflowPath();
+    const absolutePath = path.join(getRequiredEnvParam("GITHUB_WORKSPACE"), relativePath);
+    try {
+        return yaml.safeLoad(fs.readFileSync(absolutePath, "utf-8"));
+    }
+    catch (e) {
+        core.warning(`Could not read workflow: ${e.toString()}`);
+        return undefined;
+    }
+}
+exports.getWorkflow = getWorkflow;
+/**
+ * Get the path of the currently executing workflow.
+ */
+async function getWorkflowPath() {
+    if (util_1.isLocalRun()) {
+        return getRequiredEnvParam("WORKFLOW_PATH");
+    }
+    const repo_nwo = getRequiredEnvParam("GITHUB_REPOSITORY").split("/");
+    const owner = repo_nwo[0];
+    const repo = repo_nwo[1];
+    const run_id = Number(getRequiredEnvParam("GITHUB_RUN_ID"));
+    const apiClient = api.getActionsApiClient();
+    const runsResponse = await apiClient.request("GET /repos/:owner/:repo/actions/runs/:run_id", {
+        owner,
+        repo,
+        run_id,
+    });
+    const workflowUrl = runsResponse.data.workflow_url;
+    const workflowResponse = await apiClient.request(`GET ${workflowUrl}`);
+    return workflowResponse.data.path;
+}
+/**
+ * Get the workflow run ID.
+ */
+function getWorkflowRunID() {
+    const workflowRunID = parseInt(getRequiredEnvParam("GITHUB_RUN_ID"), 10);
+    if (Number.isNaN(workflowRunID)) {
+        throw new Error("GITHUB_RUN_ID must define a non NaN workflow run ID");
+    }
+    return workflowRunID;
+}
+exports.getWorkflowRunID = getWorkflowRunID;
+/**
+ * Get the analysis key paramter for the current job.
+ *
+ * This will combine the workflow path and current job name.
+ * Computing this the first time requires making requests to
+ * the github API, but after that the result will be cached.
+ */
+async function getAnalysisKey() {
+    const analysisKeyEnvVar = "CODEQL_ACTION_ANALYSIS_KEY";
+    let analysisKey = process.env[analysisKeyEnvVar];
+    if (analysisKey !== undefined) {
+        return analysisKey;
+    }
+    const workflowPath = await getWorkflowPath();
+    const jobName = getRequiredEnvParam("GITHUB_JOB");
+    analysisKey = `${workflowPath}:${jobName}`;
+    core.exportVariable(analysisKeyEnvVar, analysisKey);
+    return analysisKey;
+}
+exports.getAnalysisKey = getAnalysisKey;
+/**
+ * Get the ref currently being analyzed.
+ */
+async function getRef() {
+    // Will be in the form "refs/heads/master" on a push event
+    // or in the form "refs/pull/N/merge" on a pull_request event
+    const ref = getRequiredEnvParam("GITHUB_REF");
+    // For pull request refs we want to detect whether the workflow
+    // has run `git checkout HEAD^2` to analyze the 'head' ref rather
+    // than the 'merge' ref. If so, we want to convert the ref that
+    // we report back.
+    const pull_ref_regex = /refs\/pull\/(\d+)\/merge/;
+    const checkoutSha = await exports.getCommitOid();
+    if (pull_ref_regex.test(ref) &&
+        checkoutSha !== getRequiredEnvParam("GITHUB_SHA")) {
+        return ref.replace(pull_ref_regex, "refs/pull/$1/head");
+    }
+    else {
+        return ref;
+    }
+}
+exports.getRef = getRef;
+/**
+ * Compose a StatusReport.
+ *
+ * @param actionName The name of the action, e.g. 'init', 'finish', 'upload-sarif'
+ * @param status The status. Must be 'success', 'failure', or 'starting'
+ * @param startedAt The time this action started executing.
+ * @param cause  Cause of failure (only supply if status is 'failure')
+ * @param exception Exception (only supply if status is 'failure')
+ */
+async function createStatusReportBase(actionName, status, actionStartedAt, cause, exception) {
+    const commitOid = process.env["GITHUB_SHA"] || "";
+    const ref = await getRef();
+    const workflowRunIDStr = process.env["GITHUB_RUN_ID"];
+    let workflowRunID = -1;
+    if (workflowRunIDStr) {
+        workflowRunID = parseInt(workflowRunIDStr, 10);
+    }
+    const workflowName = process.env["GITHUB_WORKFLOW"] || "";
+    const jobName = process.env["GITHUB_JOB"] || "";
+    const analysis_key = await getAnalysisKey();
+    let workflowStartedAt = process.env[sharedEnv.CODEQL_WORKFLOW_STARTED_AT];
+    if (workflowStartedAt === undefined) {
+        workflowStartedAt = actionStartedAt.toISOString();
+        core.exportVariable(sharedEnv.CODEQL_WORKFLOW_STARTED_AT, workflowStartedAt);
+    }
+    // If running locally then the GITHUB_ACTION_REF cannot be trusted as it may be for the previous action
+    // See https://github.com/actions/runner/issues/803
+    const actionRef = isRunningLocalAction()
+        ? undefined
+        : process.env["GITHUB_ACTION_REF"];
+    const statusReport = {
+        workflow_run_id: workflowRunID,
+        workflow_name: workflowName,
+        job_name: jobName,
+        analysis_key,
+        commit_oid: commitOid,
+        ref,
+        action_name: actionName,
+        action_ref: actionRef,
+        action_oid: "unknown",
+        started_at: workflowStartedAt,
+        action_started_at: actionStartedAt.toISOString(),
+        status,
+    };
+    // Add optional parameters
+    if (cause) {
+        statusReport.cause = cause;
+    }
+    if (exception) {
+        statusReport.exception = exception;
+    }
+    if (status === "success" || status === "failure" || status === "aborted") {
+        statusReport.completed_at = new Date().toISOString();
+    }
+    const matrix = getRequiredInput("matrix");
+    if (matrix) {
+        statusReport.matrix_vars = matrix;
+    }
+    return statusReport;
+}
+exports.createStatusReportBase = createStatusReportBase;
+function isHTTPError(arg) {
+    var _a;
+    return ((_a = arg) === null || _a === void 0 ? void 0 : _a.status) !== undefined && Number.isInteger(arg.status);
+}
+/**
+ * Send a status report to the code_scanning/analysis/status endpoint.
+ *
+ * Optionally checks the response from the API endpoint and sets the action
+ * as failed if the status report failed. This is only expected to be used
+ * when sending a 'starting' report.
+ *
+ * Returns whether sending the status report was successful of not.
+ */
+async function sendStatusReport(statusReport) {
+    if (util_1.isLocalRun()) {
+        core.debug("Not sending status report because this is a local run");
+        return true;
+    }
+    const statusReportJSON = JSON.stringify(statusReport);
+    core.debug(`Sending status report: ${statusReportJSON}`);
+    const nwo = getRequiredEnvParam("GITHUB_REPOSITORY");
+    const [owner, repo] = nwo.split("/");
+    const client = api.getActionsApiClient();
+    try {
+        await client.request("PUT /repos/:owner/:repo/code-scanning/analysis/status", {
+            owner,
+            repo,
+            data: statusReportJSON,
+        });
+        return true;
+    }
+    catch (e) {
+        if (isHTTPError(e)) {
+            switch (e.status) {
+                case 403:
+                    core.setFailed("The repo on which this action is running is not opted-in to CodeQL code scanning.");
+                    return false;
+                case 404:
+                    core.setFailed("Not authorized to used the CodeQL code scanning feature on this repo.");
+                    return false;
+                case 422:
+                    // schema incompatibility when reporting status
+                    // this means that this action version is no longer compatible with the API
+                    // we still want to continue as it is likely the analysis endpoint will work
+                    if (getRequiredEnvParam("GITHUB_SERVER_URL") !== util_1.GITHUB_DOTCOM_URL) {
+                        core.warning("CodeQL Action version is incompatible with the code scanning endpoint. Please update to a compatible version of codeql-action.");
+                    }
+                    else {
+                        core.warning("CodeQL Action is out-of-date. Please upgrade to the latest version of codeql-action.");
+                    }
+                    return true;
+            }
+        }
+        // something else has gone wrong and the request/response will be logged by octokit
+        // it's possible this is a transient error and we should continue scanning
+        core.error("An unexpected error occured when sending code scanning status report.");
+        return true;
+    }
+}
+exports.sendStatusReport = sendStatusReport;
+// Is the current action executing a local copy (i.e. we're running a workflow on the codeql-action repo itself)
+// as opposed to running a remote action (i.e. when another repo references us)
+function isRunningLocalAction() {
+    const relativeScriptPath = getRelativeScriptPath();
+    return (relativeScriptPath.startsWith("..") || path.isAbsolute(relativeScriptPath));
+}
+exports.isRunningLocalAction = isRunningLocalAction;
+// Get the location where the action is running from.
+// This can be used to get the actions name or tell if we're running a local action.
+function getRelativeScriptPath() {
+    const runnerTemp = getRequiredEnvParam("RUNNER_TEMP");
+    const actionsDirectory = path.join(path.dirname(runnerTemp), "_actions");
+    return path.relative(actionsDirectory, __filename);
+}
+exports.getRelativeScriptPath = getRelativeScriptPath;
+//# sourceMappingURL=actions-util.js.map

lib/actions-util.test.js

@@ -0,0 +1,186 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const sinon_1 = __importDefault(require("sinon"));
+const actionsutil = __importStar(require("./actions-util"));
+const testing_utils_1 = require("./testing-utils");
+testing_utils_1.setupTests(ava_1.default);
+ava_1.default("getRef() throws on the empty string", async (t) => {
+    process.env["GITHUB_REF"] = "";
+    await t.throwsAsync(actionsutil.getRef);
+});
+ava_1.default("getRef() returns merge PR ref if GITHUB_SHA still checked out", async (t) => {
+    const expectedRef = "refs/pull/1/merge";
+    const currentSha = "a".repeat(40);
+    process.env["GITHUB_REF"] = expectedRef;
+    process.env["GITHUB_SHA"] = currentSha;
+    sinon_1.default.stub(actionsutil, "getCommitOid").resolves(currentSha);
+    const actualRef = await actionsutil.getRef();
+    t.deepEqual(actualRef, expectedRef);
+});
+ava_1.default("getRef() returns head PR ref if GITHUB_SHA not currently checked out", async (t) => {
+    process.env["GITHUB_REF"] = "refs/pull/1/merge";
+    process.env["GITHUB_SHA"] = "a".repeat(40);
+    sinon_1.default.stub(actionsutil, "getCommitOid").resolves("b".repeat(40));
+    const actualRef = await actionsutil.getRef();
+    t.deepEqual(actualRef, "refs/pull/1/head");
+});
+ava_1.default("getAnalysisKey() when a local run", async (t) => {
+    process.env.CODEQL_LOCAL_RUN = "true";
+    process.env.CODEQL_ACTION_ANALYSIS_KEY = "";
+    process.env.GITHUB_JOB = "";
+    actionsutil.prepareLocalRunEnvironment();
+    const actualAnalysisKey = await actionsutil.getAnalysisKey();
+    t.deepEqual(actualAnalysisKey, "LOCAL-RUN:UNKNOWN-JOB");
+});
+ava_1.default("prepareEnvironment() when a local run", (t) => {
+    process.env.CODEQL_LOCAL_RUN = "false";
+    process.env.GITHUB_JOB = "YYY";
+    process.env.CODEQL_ACTION_ANALYSIS_KEY = "TEST";
+    actionsutil.prepareLocalRunEnvironment();
+    // unchanged
+    t.deepEqual(process.env.GITHUB_JOB, "YYY");
+    t.deepEqual(process.env.CODEQL_ACTION_ANALYSIS_KEY, "TEST");
+    process.env.CODEQL_LOCAL_RUN = "true";
+    actionsutil.prepareLocalRunEnvironment();
+    // unchanged
+    t.deepEqual(process.env.GITHUB_JOB, "YYY");
+    t.deepEqual(process.env.CODEQL_ACTION_ANALYSIS_KEY, "TEST");
+    process.env.CODEQL_ACTION_ANALYSIS_KEY = "";
+    actionsutil.prepareLocalRunEnvironment();
+    // updated
+    t.deepEqual(process.env.GITHUB_JOB, "YYY");
+    t.deepEqual(process.env.CODEQL_ACTION_ANALYSIS_KEY, "LOCAL-RUN:YYY");
+    process.env.GITHUB_JOB = "";
+    process.env.CODEQL_ACTION_ANALYSIS_KEY = "";
+    actionsutil.prepareLocalRunEnvironment();
+    // updated
+    t.deepEqual(process.env.GITHUB_JOB, "UNKNOWN-JOB");
+    t.deepEqual(process.env.CODEQL_ACTION_ANALYSIS_KEY, "LOCAL-RUN:UNKNOWN-JOB");
+});
+ava_1.default("validateWorkflow() when on is missing", (t) => {
+    const errors = actionsutil.validateWorkflow({});
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MissingHooks]);
+});
+ava_1.default("validateWorkflow() when on.push is missing", (t) => {
+    const errors = actionsutil.validateWorkflow({ on: {} });
+    console.log(errors);
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MissingHooks]);
+});
+ava_1.default("validateWorkflow() when on.push is an array missing pull_request", (t) => {
+    const errors = actionsutil.validateWorkflow({ on: ["push"] });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MissingPullRequestHook]);
+});
+ava_1.default("validateWorkflow() when on.push is an array missing push", (t) => {
+    const errors = actionsutil.validateWorkflow({ on: ["pull_request"] });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MissingPushHook]);
+});
+ava_1.default("validateWorkflow() when on.push is valid", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: ["push", "pull_request"],
+    });
+    t.deepEqual(errors.length, 0);
+});
+ava_1.default("validateWorkflow() when on.push is a valid superset", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: ["push", "pull_request", "schedule"],
+    });
+    t.deepEqual(errors.length, 0);
+});
+ava_1.default("validateWorkflow() when on.push should not have a path", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: {
+            push: { branches: ["main"], paths: ["test/*"] },
+            pull_request: { branches: ["main"] },
+        },
+    });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.PathsSpecified]);
+});
+ava_1.default("validateWorkflow() when on.push is a correct object", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: { push: { branches: ["main"] }, pull_request: { branches: ["main"] } },
+    });
+    t.deepEqual(errors.length, 0);
+});
+ava_1.default("validateWorkflow() when on.push is correct with empty objects", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: { push: undefined, pull_request: undefined },
+    });
+    console.log(errors);
+    t.deepEqual(errors.length, 0);
+});
+ava_1.default("validateWorkflow() when on.push is mismatched", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: {
+            push: { branches: ["main"] },
+            pull_request: { branches: ["feature"] },
+        },
+    });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MismatchedBranches]);
+});
+ava_1.default("validateWorkflow() when on.push is not mismatched", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: {
+            push: { branches: ["main", "feature"] },
+            pull_request: { branches: ["main"] },
+        },
+    });
+    t.deepEqual(errors.length, 0);
+});
+ava_1.default("validateWorkflow() when on.push is mismatched for pull_request", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: {
+            push: { branches: ["main"] },
+            pull_request: { branches: ["main", "feature"] },
+        },
+    });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MismatchedBranches]);
+});
+ava_1.default("validateWorkflow() when on.pull_request for every branch but push specifies branches", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: {
+            push: { branches: ["main"] },
+            pull_request: null,
+        },
+    });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.MismatchedBranches]);
+});
+ava_1.default("validateWorkflow() when HEAD^2 is checked out", (t) => {
+    const errors = actionsutil.validateWorkflow({
+        on: ["push", "pull_request"],
+        jobs: { test: { steps: [{ run: "git checkout HEAD^2" }] } },
+    });
+    t.deepEqual(errors, [actionsutil.WorkflowErrors.CheckoutWrongHead]);
+});
+ava_1.default("formatWorkflowErrors() when there is one error", (t) => {
+    const message = actionsutil.formatWorkflowErrors([
+        actionsutil.WorkflowErrors.CheckoutWrongHead,
+    ]);
+    t.true(message.startsWith("1 issue was detected with this workflow:"));
+});
+ava_1.default("formatWorkflowErrors() when there are multiple errors", (t) => {
+    const message = actionsutil.formatWorkflowErrors([
+        actionsutil.WorkflowErrors.CheckoutWrongHead,
+        actionsutil.WorkflowErrors.PathsSpecified,
+    ]);
+    t.true(message.startsWith("2 issues were detected with this workflow:"));
+});
+ava_1.default("formatWorkflowCause()", (t) => {
+    const message = actionsutil.formatWorkflowCause([
+        actionsutil.WorkflowErrors.CheckoutWrongHead,
+        actionsutil.WorkflowErrors.PathsSpecified,
+    ]);
+    t.deepEqual(message, "CheckoutWrongHead,PathsSpecified");
+    t.deepEqual(actionsutil.formatWorkflowCause([]), undefined);
+});
+//# sourceMappingURL=actions-util.test.js.map

lib/analysis-paths.js

@@ -7,22 +7,31 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
+const path = __importStar(require("path"));
 function isInterpretedLanguage(language) {
-    return language === 'javascript' || language === 'python';
+    return language === "javascript" || language === "python";
 }
 // Matches a string containing only characters that are legal to include in paths on windows.
-exports.legalWindowsPathCharactersRegex = /^[^<>:"\|?]*$/;
+exports.legalWindowsPathCharactersRegex = /^[^<>:"|?]*$/;
 // Builds an environment variable suitable for LGTM_INDEX_INCLUDE or LGTM_INDEX_EXCLUDE
 function buildIncludeExcludeEnvVar(paths) {
     // Ignore anything containing a *
-    paths = paths.filter(p => p.indexOf('*') === -1);
+    paths = paths.filter((p) => p.indexOf("*") === -1);
     // Some characters are illegal in path names in windows
-    if (process.platform === 'win32') {
-        paths = paths.filter(p => p.match(exports.legalWindowsPathCharactersRegex));
+    if (process.platform === "win32") {
+        paths = paths.filter((p) => p.match(exports.legalWindowsPathCharactersRegex));
     }
-    return paths.join('\n');
+    return paths.join("\n");
 }
+function printPathFiltersWarning(config, logger) {
+    // Index include/exclude/filters only work in javascript and python.
+    // If any other languages are detected/configured then show a warning.
+    if ((config.paths.length !== 0 || config.pathsIgnore.length !== 0) &&
+        !config.languages.every(isInterpretedLanguage)) {
+        logger.warning('The "paths"/"paths-ignore" fields of the config only have effect for Javascript and Python');
+    }
+}
+exports.printPathFiltersWarning = printPathFiltersWarning;
 function includeAndExcludeAnalysisPaths(config) {
     // The 'LGTM_INDEX_INCLUDE' and 'LGTM_INDEX_EXCLUDE' environment variables
     // control which files/directories are traversed when scanning.
@@ -32,27 +41,29 @@ function includeAndExcludeAnalysisPaths(config) {
     // traverse the entire file tree to determine which files are matched.
     // Any paths containing "*" are not included in these.
     if (config.paths.length !== 0) {
-        core.exportVariable('LGTM_INDEX_INCLUDE', buildIncludeExcludeEnvVar(config.paths));
+        process.env["LGTM_INDEX_INCLUDE"] = buildIncludeExcludeEnvVar(config.paths);
     }
-    if (config.pathsIgnore.length !== 0) {
-        core.exportVariable('LGTM_INDEX_EXCLUDE', buildIncludeExcludeEnvVar(config.pathsIgnore));
+    // If the temporary or tools directory is in the working directory ignore that too.
+    const tempRelativeToWorking = path.relative(process.cwd(), config.tempDir);
+    const toolsRelativeToWorking = path.relative(process.cwd(), config.toolCacheDir);
+    let pathsIgnore = config.pathsIgnore;
+    if (!tempRelativeToWorking.startsWith("..")) {
+        pathsIgnore = pathsIgnore.concat(tempRelativeToWorking);
+    }
+    if (!toolsRelativeToWorking.startsWith("..")) {
+        pathsIgnore = pathsIgnore.concat(toolsRelativeToWorking);
+    }
+    if (pathsIgnore.length !== 0) {
+        process.env["LGTM_INDEX_EXCLUDE"] = buildIncludeExcludeEnvVar(pathsIgnore);
     }
     // The 'LGTM_INDEX_FILTERS' environment variable controls which files are
     // extracted or ignored. It does not control which directories are traversed.
     // This does understand the glob and double-glob syntax.
     const filters = [];
-    filters.push(...config.paths.map(p => 'include:' + p));
-    filters.push(...config.pathsIgnore.map(p => 'exclude:' + p));
+    filters.push(...config.paths.map((p) => `include:${p}`));
+    filters.push(...config.pathsIgnore.map((p) => `exclude:${p}`));
     if (filters.length !== 0) {
-        core.exportVariable('LGTM_INDEX_FILTERS', filters.join('\n'));
-    }
-    // Index include/exclude/filters only work in javascript and python.
-    // If any other languages are detected/configured then show a warning.
-    if ((config.paths.length !== 0 ||
-        config.pathsIgnore.length !== 0 ||
-        filters.length !== 0) &&
-        !config.languages.every(isInterpretedLanguage)) {
-        core.warning('The "paths"/"paths-ignore" fields of the config only have effect for Javascript and Python');
+        process.env["LGTM_INDEX_FILTERS"] = filters.join("\n");
     }
 }
 exports.includeAndExcludeAnalysisPaths = includeAndExcludeAnalysisPaths;

lib/analysis-paths.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analysis-paths.js","sourceRoot":"","sources":["../src/analysis-paths.ts"],"names":[],"mappings":";;;;;;;;;AAAA,2CAA6B;AAK7B,SAAS,qBAAqB,CAAC,QAAQ;IACrC,OAAO,QAAQ,KAAK,YAAY,IAAI,QAAQ,KAAK,QAAQ,CAAC;AAC5D,CAAC;AAED,6FAA6F;AAChF,QAAA,+BAA+B,GAAG,cAAc,CAAC;AAE9D,uFAAuF;AACvF,SAAS,yBAAyB,CAAC,KAAe;IAChD,iCAAiC;IACjC,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAEnD,uDAAuD;IACvD,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;QAChC,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,uCAA+B,CAAC,CAAC,CAAC;KACvE;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,SAAgB,uBAAuB,CACrC,MAA0B,EAC1B,MAAc;IAEd,oEAAoE;IACpE,sEAAsE;IACtE,IACE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,MAAM,CAAC,WAAW,CAAC,MAAM,KAAK,CAAC,CAAC;QAC9D,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,CAAC,qBAAqB,CAAC,EAC9C;QACA,MAAM,CAAC,OAAO,CACZ,4FAA4F,CAC7F,CAAC;KACH;AACH,CAAC;AAdD,0DAcC;AAED,SAAgB,8BAA8B,CAAC,MAA0B;IACvE,0EAA0E;IAC1E,+DAA+D;IAC/D,sEAAsE;IACtE,qDAAqD;IACrD,gFAAgF;IAChF,sEAAsE;IACtE,sDAAsD;IACtD,IAAI,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;QAC7B,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,yBAAyB,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;KAC7E;IACD,mFAAmF;IACnF,MAAM,qBAAqB,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IAC3E,MAAM,sBAAsB,GAAG,IAAI,CAAC,QAAQ,CAC1C,OAAO,CAAC,GAAG,EAAE,EACb,MAAM,CAAC,YAAY,CACpB,CAAC;IACF,IAAI,WAAW,GAAG,MAAM,CAAC,WAAW,CAAC;IACrC,IAAI,CAAC,qBAAqB,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE;QAC3C,WAAW,GAAG,WAAW,CAAC,MAAM,CAAC,qBAAqB,CAAC,CAAC;KACzD;IACD,IAAI,CAAC,sBAAsB,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE;QAC5C,WAAW,GAAG,WAAW,CAAC,MAAM,CAAC,sBAAsB,CAAC,CAAC;KAC1D;IACD,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE;QAC5B,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,yBAAyB,CAAC,WAAW,CAAC,CAAC;KAC5E;IAED,yEAAyE;IACzE,6EAA6E;IAC7E,wDAAwD;IACxD,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,OAAO,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC;IACzD,OAAO,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC;IAC/D,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;QACxB,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;KACxD;AACH,CAAC;AArCD,wEAqCC"}

lib/analysis-paths.test.js

@@ -1,7 +1,4 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 var __importStar = (this && this.__importStar) || function (mod) {
     if (mod && mod.__esModule) return mod;
     var result = {};
@@ -9,35 +6,69 @@ var __importStar = (this && this.__importStar) || function (mod) {
     result["default"] = mod;
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
 const ava_1 = __importDefault(require("ava"));
 const analysisPaths = __importStar(require("./analysis-paths"));
 const testing_utils_1 = require("./testing-utils");
+const util = __importStar(require("./util"));
 testing_utils_1.setupTests(ava_1.default);
 ava_1.default("emptyPaths", async (t) => {
-    const config = {
-        languages: [],
-        queries: {},
-        pathsIgnore: [],
-        paths: [],
-        originalUserInput: {},
-    };
-    analysisPaths.includeAndExcludeAnalysisPaths(config);
-    t.is(process.env['LGTM_INDEX_INCLUDE'], undefined);
-    t.is(process.env['LGTM_INDEX_EXCLUDE'], undefined);
-    t.is(process.env['LGTM_INDEX_FILTERS'], undefined);
+    return await util.withTmpDir(async (tmpDir) => {
+        const config = {
+            languages: [],
+            queries: {},
+            pathsIgnore: [],
+            paths: [],
+            originalUserInput: {},
+            tempDir: tmpDir,
+            toolCacheDir: tmpDir,
+            codeQLCmd: "",
+        };
+        analysisPaths.includeAndExcludeAnalysisPaths(config);
+        t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
+        t.is(process.env["LGTM_INDEX_EXCLUDE"], undefined);
+        t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
+    });
 });
 ava_1.default("nonEmptyPaths", async (t) => {
-    const config = {
-        languages: [],
-        queries: {},
-        paths: ['path1', 'path2', '**/path3'],
-        pathsIgnore: ['path4', 'path5', 'path6/**'],
-        originalUserInput: {},
-    };
-    analysisPaths.includeAndExcludeAnalysisPaths(config);
-    t.is(process.env['LGTM_INDEX_INCLUDE'], 'path1\npath2');
-    t.is(process.env['LGTM_INDEX_EXCLUDE'], 'path4\npath5');
-    t.is(process.env['LGTM_INDEX_FILTERS'], 'include:path1\ninclude:path2\ninclude:**/path3\nexclude:path4\nexclude:path5\nexclude:path6/**');
+    return await util.withTmpDir(async (tmpDir) => {
+        const config = {
+            languages: [],
+            queries: {},
+            paths: ["path1", "path2", "**/path3"],
+            pathsIgnore: ["path4", "path5", "path6/**"],
+            originalUserInput: {},
+            tempDir: tmpDir,
+            toolCacheDir: tmpDir,
+            codeQLCmd: "",
+        };
+        analysisPaths.includeAndExcludeAnalysisPaths(config);
+        t.is(process.env["LGTM_INDEX_INCLUDE"], "path1\npath2");
+        t.is(process.env["LGTM_INDEX_EXCLUDE"], "path4\npath5");
+        t.is(process.env["LGTM_INDEX_FILTERS"], "include:path1\ninclude:path2\ninclude:**/path3\nexclude:path4\nexclude:path5\nexclude:path6/**");
+    });
+});
+ava_1.default("exclude temp dir", async (t) => {
+    return await util.withTmpDir(async (toolCacheDir) => {
+        const tempDir = path.join(process.cwd(), "codeql-runner-temp");
+        const config = {
+            languages: [],
+            queries: {},
+            pathsIgnore: [],
+            paths: [],
+            originalUserInput: {},
+            tempDir,
+            toolCacheDir,
+            codeQLCmd: "",
+        };
+        analysisPaths.includeAndExcludeAnalysisPaths(config);
+        t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
+        t.is(process.env["LGTM_INDEX_EXCLUDE"], "codeql-runner-temp");
+        t.is(process.env["LGTM_INDEX_FILTERS"], undefined);
+    });
 });
 //# sourceMappingURL=analysis-paths.test.js.map

lib/analysis-paths.test.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analysis-paths.test.js","sourceRoot":"","sources":["../src/analysis-paths.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,2CAA6B;AAE7B,8CAAuB;AAEvB,gEAAkD;AAClD,mDAA6C;AAC7C,6CAA+B;AAE/B,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,YAAY,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC7B,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,WAAW,EAAE,EAAE;YACf,KAAK,EAAE,EAAE;YACT,iBAAiB,EAAE,EAAE;YACrB,OAAO,EAAE,MAAM;YACf,YAAY,EAAE,MAAM;YACpB,SAAS,EAAE,EAAE;SACd,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,eAAe,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAChC,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,KAAK,EAAE,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC;YACrC,WAAW,EAAE,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC;YAC3C,iBAAiB,EAAE,EAAE;YACrB,OAAO,EAAE,MAAM;YACf,YAAY,EAAE,MAAM;YACpB,SAAS,EAAE,EAAE;SACd,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,cAAc,CAAC,CAAC;QACxD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,cAAc,CAAC,CAAC;QACxD,CAAC,CAAC,EAAE,CACF,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EACjC,gGAAgG,CACjG,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,kBAAkB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACnC,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,YAAY,EAAE,EAAE;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,oBAAoB,CAAC,CAAC;QAC/D,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,WAAW,EAAE,EAAE;YACf,KAAK,EAAE,EAAE;YACT,iBAAiB,EAAE,EAAE;YACrB,OAAO;YACP,YAAY;YACZ,SAAS,EAAE,EAAE;SACd,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,oBAAoB,CAAC,CAAC;QAC9D,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/analyze-action.js

@@ -0,0 +1,69 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core = __importStar(require("@actions/core"));
+const actionsUtil = __importStar(require("./actions-util"));
+const analyze_1 = require("./analyze");
+const config_utils_1 = require("./config-utils");
+const logging_1 = require("./logging");
+const repository_1 = require("./repository");
+const util = __importStar(require("./util"));
+async function sendStatusReport(startedAt, stats, error) {
+    var _a, _b, _c;
+    const status = ((_a = stats) === null || _a === void 0 ? void 0 : _a.analyze_failure_language) !== undefined || error !== undefined
+        ? "failure"
+        : "success";
+    const statusReportBase = await actionsUtil.createStatusReportBase("finish", status, startedAt, (_b = error) === null || _b === void 0 ? void 0 : _b.message, (_c = error) === null || _c === void 0 ? void 0 : _c.stack);
+    const statusReport = {
+        ...statusReportBase,
+        ...(stats || {}),
+    };
+    await actionsUtil.sendStatusReport(statusReport);
+}
+async function run() {
+    const startedAt = new Date();
+    let stats = undefined;
+    try {
+        actionsUtil.prepareLocalRunEnvironment();
+        if (!(await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("finish", "starting", startedAt)))) {
+            return;
+        }
+        const logger = logging_1.getActionsLogger();
+        const config = await config_utils_1.getConfig(actionsUtil.getRequiredEnvParam("RUNNER_TEMP"), logger);
+        if (config === undefined) {
+            throw new Error("Config file could not be found at expected location. Has the 'init' action been called?");
+        }
+        const apiDetails = {
+            auth: actionsUtil.getRequiredInput("token"),
+            url: actionsUtil.getRequiredEnvParam("GITHUB_SERVER_URL"),
+        };
+        stats = await analyze_1.runAnalyze(repository_1.parseRepositoryNwo(actionsUtil.getRequiredEnvParam("GITHUB_REPOSITORY")), await actionsUtil.getCommitOid(), await actionsUtil.getRef(), await actionsUtil.getAnalysisKey(), actionsUtil.getRequiredEnvParam("GITHUB_WORKFLOW"), actionsUtil.getWorkflowRunID(), actionsUtil.getRequiredInput("checkout_path"), actionsUtil.getRequiredInput("matrix"), apiDetails, actionsUtil.getRequiredInput("upload") === "true", "actions", actionsUtil.getRequiredInput("output"), util.getMemoryFlag(actionsUtil.getOptionalInput("ram")), util.getAddSnippetsFlag(actionsUtil.getRequiredInput("add-snippets")), util.getThreadsFlag(actionsUtil.getOptionalInput("threads"), logger), config, logger);
+    }
+    catch (error) {
+        core.setFailed(error.message);
+        console.log(error);
+        if (error instanceof analyze_1.CodeQLAnalysisError) {
+            stats = { ...error.queriesStatusReport };
+        }
+        await sendStatusReport(startedAt, stats, error);
+        return;
+    }
+    await sendStatusReport(startedAt, stats);
+}
+async function runWrapper() {
+    try {
+        await run();
+    }
+    catch (error) {
+        core.setFailed(`analyze action failed: ${error}`);
+        console.log(error);
+    }
+}
+void runWrapper();
+//# sourceMappingURL=analyze-action.js.map

lib/analyze-action.js.map

@@ -0,0 +1 @@
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lib/analyze.js

@@ -0,0 +1,136 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const analysisPaths = __importStar(require("./analysis-paths"));
+const codeql_1 = require("./codeql");
+const languages_1 = require("./languages");
+const sharedEnv = __importStar(require("./shared-environment"));
+const upload_lib = __importStar(require("./upload-lib"));
+const util = __importStar(require("./util"));
+class CodeQLAnalysisError extends Error {
+    constructor(queriesStatusReport, message) {
+        super(message);
+        this.name = "CodeQLAnalysisError";
+        this.queriesStatusReport = queriesStatusReport;
+    }
+}
+exports.CodeQLAnalysisError = CodeQLAnalysisError;
+async function setupPythonExtractor(logger) {
+    const codeqlPython = process.env["CODEQL_PYTHON"];
+    if (codeqlPython === undefined || codeqlPython.length === 0) {
+        // If CODEQL_PYTHON is not set, no dependencies were installed, so we don't need to do anything
+        return;
+    }
+    let output = "";
+    const options = {
+        listeners: {
+            stdout: (data) => {
+                output += data.toString();
+            },
+        },
+    };
+    await new toolrunner.ToolRunner(codeqlPython, [
+        "-c",
+        "import os; import pip; print(os.path.dirname(os.path.dirname(pip.__file__)))",
+    ], options).exec();
+    logger.info(`Setting LGTM_INDEX_IMPORT_PATH=${output}`);
+    process.env["LGTM_INDEX_IMPORT_PATH"] = output;
+    output = "";
+    await new toolrunner.ToolRunner(codeqlPython, ["-c", "import sys; print(sys.version_info[0])"], options).exec();
+    logger.info(`Setting LGTM_PYTHON_SETUP_VERSION=${output}`);
+    process.env["LGTM_PYTHON_SETUP_VERSION"] = output;
+}
+async function createdDBForScannedLanguages(config, logger) {
+    // Insert the LGTM_INDEX_X env vars at this point so they are set when
+    // we extract any scanned languages.
+    analysisPaths.includeAndExcludeAnalysisPaths(config);
+    const codeql = codeql_1.getCodeQL(config.codeQLCmd);
+    for (const language of config.languages) {
+        if (languages_1.isScannedLanguage(language)) {
+            logger.startGroup(`Extracting ${language}`);
+            if (language === languages_1.Language.python) {
+                await setupPythonExtractor(logger);
+            }
+            await codeql.extractScannedLanguage(util.getCodeQLDatabasePath(config.tempDir, language), language);
+            logger.endGroup();
+        }
+    }
+}
+async function finalizeDatabaseCreation(config, threadsFlag, logger) {
+    await createdDBForScannedLanguages(config, logger);
+    const codeql = codeql_1.getCodeQL(config.codeQLCmd);
+    for (const language of config.languages) {
+        logger.startGroup(`Finalizing ${language}`);
+        await codeql.finalizeDatabase(util.getCodeQLDatabasePath(config.tempDir, language), threadsFlag);
+        logger.endGroup();
+    }
+}
+// Runs queries and creates sarif files in the given folder
+async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag, config, logger) {
+    const statusReport = {};
+    for (const language of config.languages) {
+        logger.startGroup(`Analyzing ${language}`);
+        const queries = config.queries[language];
+        if (queries.builtin.length === 0 && queries.custom.length === 0) {
+            throw new Error(`Unable to analyse ${language} as no queries were selected for this language`);
+        }
+        try {
+            for (const type of ["builtin", "custom"]) {
+                if (queries[type].length > 0) {
+                    const startTime = new Date().getTime();
+                    const databasePath = util.getCodeQLDatabasePath(config.tempDir, language);
+                    // Pass the queries to codeql using a file instead of using the command
+                    // line to avoid command line length restrictions, particularly on windows.
+                    const querySuitePath = `${databasePath}-queries-${type}.qls`;
+                    const querySuiteContents = queries[type]
+                        .map((q) => `- query: ${q}`)
+                        .join("\n");
+                    fs.writeFileSync(querySuitePath, querySuiteContents);
+                    logger.debug(`Query suite file for ${language}...\n${querySuiteContents}`);
+                    const sarifFile = path.join(sarifFolder, `${language}-${type}.sarif`);
+                    const codeql = codeql_1.getCodeQL(config.codeQLCmd);
+                    await codeql.databaseAnalyze(databasePath, sarifFile, querySuitePath, memoryFlag, addSnippetsFlag, threadsFlag);
+                    logger.debug(`SARIF results for database ${language} created at "${sarifFile}"`);
+                    logger.endGroup();
+                    // Record the performance
+                    const endTime = new Date().getTime();
+                    statusReport[`analyze_${type}_queries_${language}_duration_ms`] =
+                        endTime - startTime;
+                }
+            }
+        }
+        catch (e) {
+            logger.info(e);
+            statusReport.analyze_failure_language = language;
+            throw new CodeQLAnalysisError(statusReport, `Error running analysis for ${language}: ${e}`);
+        }
+    }
+    return statusReport;
+}
+exports.runQueries = runQueries;
+async function runAnalyze(repositoryNwo, commitOid, ref, analysisKey, analysisName, workflowRunID, checkoutPath, environment, apiDetails, doUpload, mode, outputDir, memoryFlag, addSnippetsFlag, threadsFlag, config, logger) {
+    // Delete the tracer config env var to avoid tracing ourselves
+    delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+    fs.mkdirSync(outputDir, { recursive: true });
+    logger.info("Finalizing database creation");
+    await finalizeDatabaseCreation(config, threadsFlag, logger);
+    logger.info("Analyzing database");
+    const queriesStats = await runQueries(outputDir, memoryFlag, addSnippetsFlag, threadsFlag, config, logger);
+    if (!doUpload) {
+        logger.info("Not uploading results");
+        return { ...queriesStats };
+    }
+    const uploadStats = await upload_lib.upload(outputDir, repositoryNwo, commitOid, ref, analysisKey, analysisName, workflowRunID, checkoutPath, environment, apiDetails, mode, logger);
+    return { ...queriesStats, ...uploadStats };
+}
+exports.runAnalyze = runAnalyze;
+//# sourceMappingURL=analyze.js.map

lib/analyze.js.map

@@ -0,0 +1 @@
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lib/analyze.test.js

@@ -0,0 +1,63 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const ava_1 = __importDefault(require("ava"));
+const analyze_1 = require("./analyze");
+const codeql_1 = require("./codeql");
+const languages_1 = require("./languages");
+const logging_1 = require("./logging");
+const testing_utils_1 = require("./testing-utils");
+const util = __importStar(require("./util"));
+testing_utils_1.setupTests(ava_1.default);
+// Checks that the duration fields are populated for the correct language
+// and correct case of builtin or custom.
+ava_1.default("status report fields", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        codeql_1.setCodeQL({
+            databaseAnalyze: async () => undefined,
+        });
+        const memoryFlag = "";
+        const addSnippetsFlag = "";
+        const threadsFlag = "";
+        for (const language of Object.values(languages_1.Language)) {
+            const config = {
+                languages: [language],
+                queries: {},
+                pathsIgnore: [],
+                paths: [],
+                originalUserInput: {},
+                tempDir: tmpDir,
+                toolCacheDir: tmpDir,
+                codeQLCmd: "",
+            };
+            fs.mkdirSync(util.getCodeQLDatabasePath(config.tempDir, language), {
+                recursive: true,
+            });
+            config.queries[language] = {
+                builtin: ["foo.ql"],
+                custom: [],
+            };
+            const builtinStatusReport = await analyze_1.runQueries(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, config, logging_1.getRunnerLogger(true));
+            t.deepEqual(Object.keys(builtinStatusReport).length, 1);
+            t.true(`analyze_builtin_queries_${language}_duration_ms` in builtinStatusReport);
+            config.queries[language] = {
+                builtin: [],
+                custom: ["foo.ql"],
+            };
+            const customStatusReport = await analyze_1.runQueries(tmpDir, memoryFlag, addSnippetsFlag, threadsFlag, config, logging_1.getRunnerLogger(true));
+            t.deepEqual(Object.keys(customStatusReport).length, 1);
+            t.true(`analyze_custom_queries_${language}_duration_ms` in customStatusReport);
+        }
+    });
+});
+//# sourceMappingURL=analyze.test.js.map

lib/analyze.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"analyze.test.js","sourceRoot":"","sources":["../src/analyze.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,uCAAyB;AAEzB,8CAAuB;AAEvB,uCAAuC;AACvC,qCAAqC;AAErC,2CAAuC;AACvC,uCAA4C;AAC5C,mDAA6C;AAC7C,6CAA+B;AAE/B,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,yEAAyE;AACzE,yCAAyC;AACzC,aAAI,CAAC,sBAAsB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvC,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,kBAAS,CAAC;YACR,eAAe,EAAE,KAAK,IAAI,EAAE,CAAC,SAAS;SACvC,CAAC,CAAC;QAEH,MAAM,UAAU,GAAG,EAAE,CAAC;QACtB,MAAM,eAAe,GAAG,EAAE,CAAC;QAC3B,MAAM,WAAW,GAAG,EAAE,CAAC;QAEvB,KAAK,MAAM,QAAQ,IAAI,MAAM,CAAC,MAAM,CAAC,oBAAQ,CAAC,EAAE;YAC9C,MAAM,MAAM,GAAW;gBACrB,SAAS,EAAE,CAAC,QAAQ,CAAC;gBACrB,OAAO,EAAE,EAAE;gBACX,WAAW,EAAE,EAAE;gBACf,KAAK,EAAE,EAAE;gBACT,iBAAiB,EAAE,EAAE;gBACrB,OAAO,EAAE,MAAM;gBACf,YAAY,EAAE,MAAM;gBACpB,SAAS,EAAE,EAAE;aACd,CAAC;YACF,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,qBAAqB,CAAC,MAAM,CAAC,OAAO,EAAE,QAAQ,CAAC,EAAE;gBACjE,SAAS,EAAE,IAAI;aAChB,CAAC,CAAC;YAEH,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG;gBACzB,OAAO,EAAE,CAAC,QAAQ,CAAC;gBACnB,MAAM,EAAE,EAAE;aACX,CAAC;YACF,MAAM,mBAAmB,GAAG,MAAM,oBAAU,CAC1C,MAAM,EACN,UAAU,EACV,eAAe,EACf,WAAW,EACX,MAAM,EACN,yBAAe,CAAC,IAAI,CAAC,CACtB,CAAC;YACF,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;YACxD,CAAC,CAAC,IAAI,CACJ,2BAA2B,QAAQ,cAAc,IAAI,mBAAmB,CACzE,CAAC;YAEF,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG;gBACzB,OAAO,EAAE,EAAE;gBACX,MAAM,EAAE,CAAC,QAAQ,CAAC;aACnB,CAAC;YACF,MAAM,kBAAkB,GAAG,MAAM,oBAAU,CACzC,MAAM,EACN,UAAU,EACV,eAAe,EACf,WAAW,EACX,MAAM,EACN,yBAAe,CAAC,IAAI,CAAC,CACtB,CAAC;YACF,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;YACvD,CAAC,CAAC,IAAI,CACJ,0BAA0B,QAAQ,cAAc,IAAI,kBAAkB,CACvE,CAAC;SACH;IACH,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/api-client.js

@@ -10,37 +10,90 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const github = __importStar(require("@actions/github"));
+const path = __importStar(require("path"));
+const core_1 = require("@actions/core");
+const githubUtils = __importStar(require("@actions/github/lib/utils"));
+const retry = __importStar(require("@octokit/plugin-retry"));
 const console_log_level_1 = __importDefault(require("console-log-level"));
+const semver = __importStar(require("semver"));
+const actions_util_1 = require("./actions-util");
+const apiCompatibility = __importStar(require("./api-compatibility.json"));
+const logging_1 = require("./logging");
 const util_1 = require("./util");
-exports.getApiClient = function (githubAuth, githubApiUrl, allowLocalRun = false) {
+var DisallowedAPIVersionReason;
+(function (DisallowedAPIVersionReason) {
+    DisallowedAPIVersionReason[DisallowedAPIVersionReason["ACTION_TOO_OLD"] = 0] = "ACTION_TOO_OLD";
+    DisallowedAPIVersionReason[DisallowedAPIVersionReason["ACTION_TOO_NEW"] = 1] = "ACTION_TOO_NEW";
+})(DisallowedAPIVersionReason = exports.DisallowedAPIVersionReason || (exports.DisallowedAPIVersionReason = {}));
+const GITHUB_ENTERPRISE_VERSION_HEADER = "x-github-enterprise-version";
+const CODEQL_ACTION_WARNED_ABOUT_VERSION_ENV_VAR = "CODEQL_ACTION_WARNED_ABOUT_VERSION";
+let hasBeenWarnedAboutVersion = false;
+exports.getApiClient = function (apiDetails, mode, logger, allowLocalRun = false, possibleFailureExpected = false) {
     if (util_1.isLocalRun() && !allowLocalRun) {
-        throw new Error('Invalid API call in local run');
+        throw new Error("Invalid API call in local run");
     }
-    return new github.GitHub({
-        auth: parseAuth(githubAuth),
-        baseUrl: githubApiUrl,
-        userAgent: "CodeQL Action",
-        log: console_log_level_1.default({ level: "debug" })
+    const customOctokit = githubUtils.GitHub.plugin(retry.retry, (octokit, _) => {
+        octokit.hook.after("request", (response, __) => {
+            if (response.status < 400 && !possibleFailureExpected) {
+                if (hasBeenWarnedAboutVersion) {
+                    return;
+                }
+            }
+            if (response.headers[GITHUB_ENTERPRISE_VERSION_HEADER] === undefined ||
+                process.env[CODEQL_ACTION_WARNED_ABOUT_VERSION_ENV_VAR] === undefined) {
+                return;
+            }
+            const installedVersion = response.headers[GITHUB_ENTERPRISE_VERSION_HEADER];
+            const disallowedAPIVersionReason = apiVersionInRange(installedVersion, apiCompatibility.minimumVersion, apiCompatibility.maximumVersion);
+            const toolName = mode === "actions" ? "Action" : "Runner";
+            if (disallowedAPIVersionReason === DisallowedAPIVersionReason.ACTION_TOO_OLD) {
+                logger.warning(`The CodeQL ${toolName} version you are using is too old to be compatible with GitHub Enterprise ${installedVersion}. If you experience issues, please upgrade to a more recent version of the CodeQL ${toolName}.`);
+            }
+            if (disallowedAPIVersionReason === DisallowedAPIVersionReason.ACTION_TOO_NEW) {
+                logger.warning(`GitHub Enterprise ${installedVersion} is too old to be compatible with this version of the CodeQL ${toolName}. If you experience issues, please upgrade to a more recent version of GitHub Enterprise or use an older version of the CodeQL ${toolName}.`);
+            }
+            hasBeenWarnedAboutVersion = true;
+            if (mode === "actions") {
+                core_1.exportVariable(CODEQL_ACTION_WARNED_ABOUT_VERSION_ENV_VAR, true);
+            }
+        });
     });
+    return new customOctokit(githubUtils.getOctokitOptions(apiDetails.auth, {
+        baseUrl: getApiUrl(apiDetails.url),
+        userAgent: "CodeQL Action",
+        log: console_log_level_1.default({ level: "debug" }),
+    }));
 };
-// Parses the user input as either a single token,
-// or a username and password / PAT.
-function parseAuth(auth) {
-    // Check if it's a username:password pair
-    const c = auth.indexOf(':');
-    if (c !== -1) {
-        return 'basic ' + Buffer.from(auth).toString('base64');
+function getApiUrl(githubUrl) {
+    const url = new URL(githubUrl);
+    // If we detect this is trying to be to github.com
+    // then return with a fixed canonical URL.
+    if (url.hostname === "github.com" || url.hostname === "api.github.com") {
+        return "https://api.github.com";
     }
-    // Otherwise use the token as it is
-    return auth;
+    // Add the /api/v3 API prefix
+    url.pathname = path.join(url.pathname, "api", "v3");
+    return url.toString();
 }
 // Temporary function to aid in the transition to running on and off of github actions.
-// Once all code has been coverted this function should be removed or made canonical
+// Once all code has been converted this function should be removed or made canonical
 // and called only from the action entrypoints.
 function getActionsApiClient(allowLocalRun = false) {
-    return exports.getApiClient(core.getInput('token'), util_1.getRequiredEnvParam('GITHUB_API_URL'), allowLocalRun);
+    const apiDetails = {
+        auth: actions_util_1.getRequiredInput("token"),
+        url: actions_util_1.getRequiredEnvParam("GITHUB_SERVER_URL"),
+    };
+    return exports.getApiClient(apiDetails, "actions", logging_1.getActionsLogger(), allowLocalRun);
 }
 exports.getActionsApiClient = getActionsApiClient;
+function apiVersionInRange(version, minimumVersion, maximumVersion) {
+    if (!semver.satisfies(version, `>=${minimumVersion}`)) {
+        return DisallowedAPIVersionReason.ACTION_TOO_NEW;
+    }
+    if (!semver.satisfies(version, `<=${maximumVersion}`)) {
+        return DisallowedAPIVersionReason.ACTION_TOO_OLD;
+    }
+    return undefined;
+}
+exports.apiVersionInRange = apiVersionInRange;
 //# sourceMappingURL=api-client.js.map

lib/api-client.js.map

@@ -1 +1 @@
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+{"version":3,"file":"api-client.js","sourceRoot":"","sources":["../src/api-client.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,2CAA6B;AAE7B,wCAA+C;AAC/C,uEAAyD;AACzD,6DAA+C;AAE/C,0EAAgD;AAChD,+CAAiC;AAEjC,iDAAuE;AACvE,2EAA6D;AAC7D,uCAAqD;AACrD,iCAA0C;AAE1C,IAAY,0BAGX;AAHD,WAAY,0BAA0B;IACpC,+FAAc,CAAA;IACd,+FAAc,CAAA;AAChB,CAAC,EAHW,0BAA0B,GAA1B,kCAA0B,KAA1B,kCAA0B,QAGrC;AAOD,MAAM,gCAAgC,GAAG,6BAA6B,CAAC;AACvE,MAAM,0CAA0C,GAC9C,oCAAoC,CAAC;AACvC,IAAI,yBAAyB,GAAG,KAAK,CAAC;AAEzB,QAAA,YAAY,GAAG,UAC1B,UAA4B,EAC5B,IAAU,EACV,MAAc,EACd,aAAa,GAAG,KAAK,EACrB,uBAAuB,GAAG,KAAK;IAE/B,IAAI,iBAAU,EAAE,IAAI,CAAC,aAAa,EAAE;QAClC,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;KAClD;IACD,MAAM,aAAa,GAAG,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC,EAAE,EAAE;QAC1E,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,SAAS,EAAE,CAAC,QAA8B,EAAE,EAAE,EAAE,EAAE;YACnE,IAAI,QAAQ,CAAC,MAAM,GAAG,GAAG,IAAI,CAAC,uBAAuB,EAAE;gBACrD,IAAI,yBAAyB,EAAE;oBAC7B,OAAO;iBACR;aACF;YACD,IACE,QAAQ,CAAC,OAAO,CAAC,gCAAgC,CAAC,KAAK,SAAS;gBAChE,OAAO,CAAC,GAAG,CAAC,0CAA0C,CAAC,KAAK,SAAS,EACrE;gBACA,OAAO;aACR;YACD,MAAM,gBAAgB,GAAG,QAAQ,CAAC,OAAO,CACvC,gCAAgC,CACvB,CAAC;YACZ,MAAM,0BAA0B,GAAG,iBAAiB,CAClD,gBAAgB,EAChB,gBAAgB,CAAC,cAAc,EAC/B,gBAAgB,CAAC,cAAc,CAChC,CAAC;YAEF,MAAM,QAAQ,GAAG,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC;YAE1D,IACE,0BAA0B,KAAK,0BAA0B,CAAC,cAAc,EACxE;gBACA,MAAM,CAAC,OAAO,CACZ,cAAc,QAAQ,6EAA6E,gBAAgB,qFAAqF,QAAQ,GAAG,CACpN,CAAC;aACH;YACD,IACE,0BAA0B,KAAK,0BAA0B,CAAC,cAAc,EACxE;gBACA,MAAM,CAAC,OAAO,CACZ,qBAAqB,gBAAgB,gEAAgE,QAAQ,kIAAkI,QAAQ,GAAG,CAC3P,CAAC;aACH;YACD,yBAAyB,GAAG,IAAI,CAAC;YACjC,IAAI,IAAI,KAAK,SAAS,EAAE;gBACtB,qBAAc,CAAC,0CAA0C,EAAE,IAAI,CAAC,CAAC;aAClE;QACH,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IACH,OAAO,IAAI,aAAa,CACtB,WAAW,CAAC,iBAAiB,CAAC,UAAU,CAAC,IAAI,EAAE;QAC7C,OAAO,EAAE,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC;QAClC,SAAS,EAAE,eAAe;QAC1B,GAAG,EAAE,2BAAe,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC;KACzC,CAAC,CACH,CAAC;AACJ,CAAC,CAAC;AAEF,SAAS,SAAS,CAAC,SAAiB;IAClC,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,SAAS,CAAC,CAAC;IAE/B,kDAAkD;IAClD,0CAA0C;IAC1C,IAAI,GAAG,CAAC,QAAQ,KAAK,YAAY,IAAI,GAAG,CAAC,QAAQ,KAAK,gBAAgB,EAAE;QACtE,OAAO,wBAAwB,CAAC;KACjC;IAED,6BAA6B;IAC7B,GAAG,CAAC,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;IACpD,OAAO,GAAG,CAAC,QAAQ,EAAE,CAAC;AACxB,CAAC;AAED,uFAAuF;AACvF,qFAAqF;AACrF,+CAA+C;AAC/C,SAAgB,mBAAmB,CAAC,aAAa,GAAG,KAAK;IACvD,MAAM,UAAU,GAAG;QACjB,IAAI,EAAE,+BAAgB,CAAC,OAAO,CAAC;QAC/B,GAAG,EAAE,kCAAmB,CAAC,mBAAmB,CAAC;KAC9C,CAAC;IAEF,OAAO,oBAAY,CAAC,UAAU,EAAE,SAAS,EAAE,0BAAgB,EAAE,EAAE,aAAa,CAAC,CAAC;AAChF,CAAC;AAPD,kDAOC;AAED,SAAgB,iBAAiB,CAC/B,OAAe,EACf,cAAsB,EACtB,cAAsB;IAEtB,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,OAAO,EAAE,KAAK,cAAc,EAAE,CAAC,EAAE;QACrD,OAAO,0BAA0B,CAAC,cAAc,CAAC;KAClD;IACD,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,OAAO,EAAE,KAAK,cAAc,EAAE,CAAC,EAAE;QACrD,OAAO,0BAA0B,CAAC,cAAc,CAAC;KAClD;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAZD,8CAYC"}

lib/api-client.test.js

@@ -0,0 +1,17 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const api_client_1 = require("./api-client");
+ava_1.default("allowed API versions", async (t) => {
+    t.is(api_client_1.apiVersionInRange("1.33.0", "1.33", "2.0"), undefined);
+    t.is(api_client_1.apiVersionInRange("1.33.1", "1.33", "2.0"), undefined);
+    t.is(api_client_1.apiVersionInRange("1.34.0", "1.33", "2.0"), undefined);
+    t.is(api_client_1.apiVersionInRange("2.0.0", "1.33", "2.0"), undefined);
+    t.is(api_client_1.apiVersionInRange("2.0.1", "1.33", "2.0"), undefined);
+    t.is(api_client_1.apiVersionInRange("1.32.0", "1.33", "2.0"), api_client_1.DisallowedAPIVersionReason.ACTION_TOO_NEW);
+    t.is(api_client_1.apiVersionInRange("2.1.0", "1.33", "2.0"), api_client_1.DisallowedAPIVersionReason.ACTION_TOO_OLD);
+});
+//# sourceMappingURL=api-client.test.js.map

lib/api-client.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"api-client.test.js","sourceRoot":"","sources":["../src/api-client.test.ts"],"names":[],"mappings":";;;;;AAAA,8CAAuB;AAEvB,6CAA6E;AAE7E,aAAI,CAAC,sBAAsB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACvC,CAAC,CAAC,EAAE,CAAC,8BAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC5D,CAAC,CAAC,EAAE,CAAC,8BAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC5D,CAAC,CAAC,EAAE,CAAC,8BAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC5D,CAAC,CAAC,EAAE,CAAC,8BAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC3D,CAAC,CAAC,EAAE,CAAC,8BAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC3D,CAAC,CAAC,EAAE,CACF,8BAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAC1C,uCAA0B,CAAC,cAAc,CAC1C,CAAC;IACF,CAAC,CAAC,EAAE,CACF,8BAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,EACzC,uCAA0B,CAAC,cAAc,CAC1C,CAAC;AACJ,CAAC,CAAC,CAAC"}

lib/api-compatibility.json

@@ -0,0 +1 @@
+{ "maximumVersion": "3.0", "minimumVersion": "2.22" }

lib/autobuild-action.js

@@ -0,0 +1,64 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core = __importStar(require("@actions/core"));
+const actionsUtil = __importStar(require("./actions-util"));
+const autobuild_1 = require("./autobuild");
+const config_utils = __importStar(require("./config-utils"));
+const logging_1 = require("./logging");
+async function sendCompletedStatusReport(startedAt, allLanguages, failingLanguage, cause) {
+    var _a, _b;
+    const status = failingLanguage !== undefined || cause !== undefined
+        ? "failure"
+        : "success";
+    const statusReportBase = await actionsUtil.createStatusReportBase("autobuild", status, startedAt, (_a = cause) === null || _a === void 0 ? void 0 : _a.message, (_b = cause) === null || _b === void 0 ? void 0 : _b.stack);
+    const statusReport = {
+        ...statusReportBase,
+        autobuild_languages: allLanguages.join(","),
+        autobuild_failure: failingLanguage,
+    };
+    await actionsUtil.sendStatusReport(statusReport);
+}
+async function run() {
+    const logger = logging_1.getActionsLogger();
+    const startedAt = new Date();
+    let language = undefined;
+    try {
+        actionsUtil.prepareLocalRunEnvironment();
+        if (!(await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("autobuild", "starting", startedAt)))) {
+            return;
+        }
+        const config = await config_utils.getConfig(actionsUtil.getRequiredEnvParam("RUNNER_TEMP"), logger);
+        if (config === undefined) {
+            throw new Error("Config file could not be found at expected location. Has the 'init' action been called?");
+        }
+        language = autobuild_1.determineAutobuildLanguage(config, logger);
+        if (language !== undefined) {
+            await autobuild_1.runAutobuild(language, config, logger);
+        }
+    }
+    catch (error) {
+        core.setFailed(`We were unable to automatically build your code. Please replace the call to the autobuild action with your custom build steps.  ${error.message}`);
+        console.log(error);
+        await sendCompletedStatusReport(startedAt, language ? [language] : [], language, error);
+        return;
+    }
+    await sendCompletedStatusReport(startedAt, language ? [language] : []);
+}
+async function runWrapper() {
+    try {
+        await run();
+    }
+    catch (error) {
+        core.setFailed(`autobuild action failed. ${error}`);
+        console.log(error);
+    }
+}
+void runWrapper();
+//# sourceMappingURL=autobuild-action.js.map

lib/autobuild-action.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"autobuild-action.js","sourceRoot":"","sources":["../src/autobuild-action.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AAEtC,4DAA8C;AAC9C,2CAAuE;AACvE,6DAA+C;AAE/C,uCAA6C;AAS7C,KAAK,UAAU,yBAAyB,CACtC,SAAe,EACf,YAAsB,EACtB,eAAwB,EACxB,KAAa;;IAEb,MAAM,MAAM,GACV,eAAe,KAAK,SAAS,IAAI,KAAK,KAAK,SAAS;QAClD,CAAC,CAAC,SAAS;QACX,CAAC,CAAC,SAAS,CAAC;IAChB,MAAM,gBAAgB,GAAG,MAAM,WAAW,CAAC,sBAAsB,CAC/D,WAAW,EACX,MAAM,EACN,SAAS,QACT,KAAK,0CAAE,OAAO,QACd,KAAK,0CAAE,KAAK,CACb,CAAC;IACF,MAAM,YAAY,GAA0B;QAC1C,GAAG,gBAAgB;QACnB,mBAAmB,EAAE,YAAY,CAAC,IAAI,CAAC,GAAG,CAAC;QAC3C,iBAAiB,EAAE,eAAe;KACnC,CAAC;IACF,MAAM,WAAW,CAAC,gBAAgB,CAAC,YAAY,CAAC,CAAC;AACnD,CAAC;AAED,KAAK,UAAU,GAAG;IAChB,MAAM,MAAM,GAAG,0BAAgB,EAAE,CAAC;IAClC,MAAM,SAAS,GAAG,IAAI,IAAI,EAAE,CAAC;IAC7B,IAAI,QAAQ,GAAyB,SAAS,CAAC;IAC/C,IAAI;QACF,WAAW,CAAC,0BAA0B,EAAE,CAAC;QACzC,IACE,CAAC,CAAC,MAAM,WAAW,CAAC,gBAAgB,CAClC,MAAM,WAAW,CAAC,sBAAsB,CACtC,WAAW,EACX,UAAU,EACV,SAAS,CACV,CACF,CAAC,EACF;YACA,OAAO;SACR;QAED,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,SAAS,CACzC,WAAW,CAAC,mBAAmB,CAAC,aAAa,CAAC,EAC9C,MAAM,CACP,CAAC;QACF,IAAI,MAAM,KAAK,SAAS,EAAE;YACxB,MAAM,IAAI,KAAK,CACb,yFAAyF,CAC1F,CAAC;SACH;QACD,QAAQ,GAAG,sCAA0B,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACtD,IAAI,QAAQ,KAAK,SAAS,EAAE;YAC1B,MAAM,wBAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;SAC9C;KACF;IAAC,OAAO,KAAK,EAAE;QACd,IAAI,CAAC,SAAS,CACZ,mIAAmI,KAAK,CAAC,OAAO,EAAE,CACnJ,CAAC;QACF,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QACnB,MAAM,yBAAyB,CAC7B,SAAS,EACT,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,EAC1B,QAAQ,EACR,KAAK,CACN,CAAC;QACF,OAAO;KACR;IAED,MAAM,yBAAyB,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;AACzE,CAAC;AAED,KAAK,UAAU,UAAU;IACvB,IAAI;QACF,MAAM,GAAG,EAAE,CAAC;KACb;IAAC,OAAO,KAAK,EAAE;QACd,IAAI,CAAC,SAAS,CAAC,4BAA4B,KAAK,EAAE,CAAC,CAAC;QACpD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;KACpB;AACH,CAAC;AAED,KAAK,UAAU,EAAE,CAAC"}

lib/autobuild.js

@@ -1,65 +1,32 @@
 "use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
 const codeql_1 = require("./codeql");
-const config_utils = __importStar(require("./config-utils"));
-const util = __importStar(require("./util"));
-async function sendCompletedStatusReport(startedAt, allLanguages, failingLanguage, cause) {
-    var _a, _b;
-    const status = failingLanguage !== undefined || cause !== undefined ? 'failure' : 'success';
-    const statusReportBase = await util.createStatusReportBase('autobuild', status, startedAt, (_a = cause) === null || _a === void 0 ? void 0 : _a.message, (_b = cause) === null || _b === void 0 ? void 0 : _b.stack);
-    const statusReport = {
-        ...statusReportBase,
-        autobuild_languages: allLanguages.join(','),
-        autobuild_failure: failingLanguage,
-    };
-    await util.sendStatusReport(statusReport);
-}
-async function run() {
-    const startedAt = new Date();
-    let language;
-    try {
-        util.prepareLocalRunEnvironment();
-        if (!await util.sendStatusReport(await util.createStatusReportBase('autobuild', 'starting', startedAt), true)) {
-            return;
-        }
-        const config = await config_utils.getConfig();
-        // Attempt to find a language to autobuild
-        // We want pick the dominant language in the repo from the ones we're able to build
-        // The languages are sorted in order specified by user or by lines of code if we got
-        // them from the GitHub API, so try to build the first language on the list.
-        const autobuildLanguages = config.languages.filter(codeql_1.isTracedLanguage);
-        language = autobuildLanguages[0];
-        if (!language) {
-            core.info("None of the languages in this project require extra build steps");
-            return;
-        }
-        core.debug(`Detected dominant traced language: ${language}`);
-        if (autobuildLanguages.length > 1) {
-            core.warning(`We will only automatically build ${language} code. If you wish to scan ${autobuildLanguages.slice(1).join(' and ')}, you must replace this block with custom build steps.`);
-        }
-        core.startGroup(`Attempting to automatically build ${language} code`);
-        const codeQL = codeql_1.getCodeQL();
-        await codeQL.runAutobuild(language);
-        core.endGroup();
+const languages_1 = require("./languages");
+function determineAutobuildLanguage(config, logger) {
+    // Attempt to find a language to autobuild
+    // We want pick the dominant language in the repo from the ones we're able to build
+    // The languages are sorted in order specified by user or by lines of code if we got
+    // them from the GitHub API, so try to build the first language on the list.
+    const autobuildLanguages = config.languages.filter(languages_1.isTracedLanguage);
+    const language = autobuildLanguages[0];
+    if (!language) {
+        logger.info("None of the languages in this project require extra build steps");
+        return undefined;
     }
-    catch (error) {
-        core.setFailed("We were unable to automatically build your code. Please replace the call to the autobuild action with your custom build steps.  " + error.message);
-        console.log(error);
-        await sendCompletedStatusReport(startedAt, [language], language, error);
-        return;
+    logger.debug(`Detected dominant traced language: ${language}`);
+    if (autobuildLanguages.length > 1) {
+        logger.warning(`We will only automatically build ${language} code. If you wish to scan ${autobuildLanguages
+            .slice(1)
+            .join(" and ")}, you must replace this call with custom build steps.`);
     }
-    await sendCompletedStatusReport(startedAt, [language]);
+    return language;
 }
-run().catch(e => {
-    core.setFailed("autobuild action failed.  " + e);
-    console.log(e);
-});
+exports.determineAutobuildLanguage = determineAutobuildLanguage;
+async function runAutobuild(language, config, logger) {
+    logger.startGroup(`Attempting to automatically build ${language} code`);
+    const codeQL = codeql_1.getCodeQL(config.codeQLCmd);
+    await codeQL.runAutobuild(language);
+    logger.endGroup();
+}
+exports.runAutobuild = runAutobuild;
 //# sourceMappingURL=autobuild.js.map

lib/autobuild.js.map

@@ -1 +1 @@
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+{"version":3,"file":"autobuild.js","sourceRoot":"","sources":["../src/autobuild.ts"],"names":[],"mappings":";;AAAA,qCAAqC;AAErC,2CAAyD;AAGzD,SAAgB,0BAA0B,CACxC,MAA2B,EAC3B,MAAc;IAEd,0CAA0C;IAC1C,mFAAmF;IACnF,oFAAoF;IACpF,4EAA4E;IAC5E,MAAM,kBAAkB,GAAG,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,4BAAgB,CAAC,CAAC;IACrE,MAAM,QAAQ,GAAG,kBAAkB,CAAC,CAAC,CAAC,CAAC;IAEvC,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,CAAC,IAAI,CACT,iEAAiE,CAClE,CAAC;QACF,OAAO,SAAS,CAAC;KAClB;IAED,MAAM,CAAC,KAAK,CAAC,sCAAsC,QAAQ,EAAE,CAAC,CAAC;IAE/D,IAAI,kBAAkB,CAAC,MAAM,GAAG,CAAC,EAAE;QACjC,MAAM,CAAC,OAAO,CACZ,oCAAoC,QAAQ,8BAA8B,kBAAkB;aACzF,KAAK,CAAC,CAAC,CAAC;aACR,IAAI,CAAC,OAAO,CAAC,uDAAuD,CACxE,CAAC;KACH;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC;AA7BD,gEA6BC;AAEM,KAAK,UAAU,YAAY,CAChC,QAAkB,EAClB,MAA2B,EAC3B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,qCAAqC,QAAQ,OAAO,CAAC,CAAC;IACxE,MAAM,MAAM,GAAG,kBAAS,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IAC3C,MAAM,MAAM,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;IACpC,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AATD,oCASC"}

lib/cli.js

@@ -1,57 +0,0 @@
-"use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const commander_1 = require("commander");
-const path = __importStar(require("path"));
-const logging_1 = require("./logging");
-const repository_1 = require("./repository");
-const upload_lib = __importStar(require("./upload-lib"));
-const program = new commander_1.Command();
-program.version('0.0.1');
-function parseGithubApiUrl(inputUrl) {
-    try {
-        const url = new URL(inputUrl);
-        // If we detect this is trying to be to github.com
-        // then return with a fixed canonical URL.
-        if (url.hostname === 'github.com' || url.hostname === 'api.github.com') {
-            return 'https://api.github.com';
-        }
-        // Add the API path if it's not already present.
-        if (url.pathname.indexOf('/api/v3') === -1) {
-            url.pathname = path.join(url.pathname, 'api', 'v3');
-        }
-        return url.toString();
-    }
-    catch (e) {
-        throw new Error(`"${inputUrl}" is not a valid URL`);
-    }
-}
-const logger = logging_1.getCLILogger();
-program
-    .command('upload')
-    .description('Uploads a SARIF file, or all SARIF files from a directory, to code scanning')
-    .requiredOption('--sarif-file <file>', 'SARIF file to upload; can also be a directory for uploading multiple')
-    .requiredOption('--repository <repository>', 'Repository name')
-    .requiredOption('--commit <commit>', 'SHA of commit that was analyzed')
-    .requiredOption('--ref <ref>', 'Name of ref that was analyzed')
-    .requiredOption('--github-url <url>', 'URL of GitHub instance')
-    .requiredOption('--github-auth <auth>', 'GitHub Apps token, or of the form "username:token" if using a personal access token')
-    .option('--checkout-path <path>', 'Checkout path (default: current working directory)')
-    .action(async (cmd) => {
-    try {
-        await upload_lib.upload(cmd.sarifFile, repository_1.parseRepositoryNwo(cmd.repository), cmd.commit, cmd.ref, undefined, undefined, undefined, cmd.checkoutPath || process.cwd(), undefined, cmd.githubAuth, parseGithubApiUrl(cmd.githubUrl), 'cli', logger);
-    }
-    catch (e) {
-        logger.error('Upload failed');
-        logger.error(e);
-        process.exitCode = 1;
-    }
-});
-program.parse(process.argv);
-//# sourceMappingURL=cli.js.map

lib/cli.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"cli.js","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";;;;;;;;;AAAA,yCAAoC;AACpC,2CAA6B;AAE7B,uCAAyC;AACzC,6CAAkD;AAClD,yDAA2C;AAE3C,MAAM,OAAO,GAAG,IAAI,mBAAO,EAAE,CAAC;AAC9B,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAYzB,SAAS,iBAAiB,CAAC,QAAgB;IACzC,IAAI;QACF,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,QAAQ,CAAC,CAAC;QAE9B,kDAAkD;QAClD,0CAA0C;QAC1C,IAAI,GAAG,CAAC,QAAQ,KAAK,YAAY,IAAI,GAAG,CAAC,QAAQ,KAAK,gBAAgB,EAAE;YACtE,OAAO,wBAAwB,CAAC;SACjC;QAED,gDAAgD;QAChD,IAAI,GAAG,CAAC,QAAQ,CAAC,OAAO,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE;YAC1C,GAAG,CAAC,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;SACrD;QAED,OAAO,GAAG,CAAC,QAAQ,EAAE,CAAC;KAEvB;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,IAAI,KAAK,CAAC,IAAI,QAAQ,sBAAsB,CAAC,CAAC;KACrD;AACH,CAAC;AAED,MAAM,MAAM,GAAG,sBAAY,EAAE,CAAC;AAE9B,OAAO;KACJ,OAAO,CAAC,QAAQ,CAAC;KACjB,WAAW,CAAC,6EAA6E,CAAC;KAC1F,cAAc,CAAC,qBAAqB,EAAE,sEAAsE,CAAC;KAC7G,cAAc,CAAC,2BAA2B,EAAE,iBAAiB,CAAC;KAC9D,cAAc,CAAC,mBAAmB,EAAE,iCAAiC,CAAC;KACtE,cAAc,CAAC,aAAa,EAAE,+BAA+B,CAAC;KAC9D,cAAc,CAAC,oBAAoB,EAAE,wBAAwB,CAAC;KAC9D,cAAc,CAAC,sBAAsB,EAAE,qFAAqF,CAAC;KAC7H,MAAM,CAAC,wBAAwB,EAAE,oDAAoD,CAAC;KACtF,MAAM,CAAC,KAAK,EAAE,GAAe,EAAE,EAAE;IAChC,IAAI;QACF,MAAM,UAAU,CAAC,MAAM,CACrB,GAAG,CAAC,SAAS,EACb,+BAAkB,CAAC,GAAG,CAAC,UAAU,CAAC,EAClC,GAAG,CAAC,MAAM,EACV,GAAG,CAAC,GAAG,EACP,SAAS,EACT,SAAS,EACT,SAAS,EACT,GAAG,CAAC,YAAY,IAAI,OAAO,CAAC,GAAG,EAAE,EACjC,SAAS,EACT,GAAG,CAAC,UAAU,EACd,iBAAiB,CAAC,GAAG,CAAC,SAAS,CAAC,EAChC,KAAK,EACL,MAAM,CAAC,CAAC;KACX;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC;QAC9B,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAChB,OAAO,CAAC,QAAQ,GAAG,CAAC,CAAC;KACtB;AACH,CAAC,CAAC,CAAC;AAEL,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC"}

lib/codeql.js

@@ -6,148 +6,188 @@ var __importStar = (this && this.__importStar) || function (mod) {
     result["default"] = mod;
     return result;
 };
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const exec = __importStar(require("@actions/exec"));
-const http = __importStar(require("@actions/http-client"));
-const toolcache = __importStar(require("@actions/tool-cache"));
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
-const semver = __importStar(require("semver"));
 const stream = __importStar(require("stream"));
 const globalutil = __importStar(require("util"));
-const v4_1 = __importDefault(require("uuid/v4"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const http = __importStar(require("@actions/http-client"));
+const toolcache = __importStar(require("@actions/tool-cache"));
+const semver = __importStar(require("semver"));
+const uuid_1 = require("uuid");
+const actions_util_1 = require("./actions-util");
 const api = __importStar(require("./api-client"));
 const defaults = __importStar(require("./defaults.json")); // Referenced from codeql-action-sync-tool!
+const error_matcher_1 = require("./error-matcher");
+const toolrunner_error_catcher_1 = require("./toolrunner-error-catcher");
 const util = __importStar(require("./util"));
 /**
  * Stores the CodeQL object, and is populated by `setupCodeQL` or `getCodeQL`.
  * Can be overridden in tests using `setCodeQL`.
  */
 let cachedCodeQL = undefined;
-/**
- * Environment variable used to store the location of the CodeQL CLI executable.
- * Value is set by setupCodeQL and read by getCodeQL.
- */
-const CODEQL_ACTION_CMD = "CODEQL_ACTION_CMD";
 const CODEQL_BUNDLE_VERSION = defaults.bundleVersion;
-const CODEQL_BUNDLE_NAME = "codeql-bundle.tar.gz";
 const CODEQL_DEFAULT_ACTION_REPOSITORY = "github/codeql-action";
-function getCodeQLActionRepository() {
-    // Actions do not know their own repository name,
-    // so we currently use this hack to find the name based on where our files are.
-    // This can be removed once the change to the runner in https://github.com/actions/runner/pull/585 is deployed.
-    const runnerTemp = util.getRequiredEnvParam("RUNNER_TEMP");
-    const actionsDirectory = path.join(path.dirname(runnerTemp), "_actions");
-    const relativeScriptPath = path.relative(actionsDirectory, __filename);
-    // This handles the case where the Action does not come from an Action repository,
-    // e.g. our integration tests which use the Action code from the current checkout.
-    if (relativeScriptPath.startsWith("..") || path.isAbsolute(relativeScriptPath)) {
+function getCodeQLBundleName() {
+    let platform;
+    if (process.platform === "win32") {
+        platform = "win64";
+    }
+    else if (process.platform === "linux") {
+        platform = "linux64";
+    }
+    else if (process.platform === "darwin") {
+        platform = "osx64";
+    }
+    else {
+        return "codeql-bundle.tar.gz";
+    }
+    return `codeql-bundle-${platform}.tar.gz`;
+}
+function getCodeQLActionRepository(mode, logger) {
+    if (mode !== "actions") {
         return CODEQL_DEFAULT_ACTION_REPOSITORY;
     }
-    const relativeScriptPathParts = relativeScriptPath.split(path.sep);
-    return relativeScriptPathParts[0] + "/" + relativeScriptPathParts[1];
+    if (process.env["GITHUB_ACTION_REPOSITORY"] !== undefined) {
+        return process.env["GITHUB_ACTION_REPOSITORY"];
+    }
+    // The Actions Runner used with GitHub Enterprise Server 2.22 did not set the GITHUB_ACTION_REPOSITORY variable.
+    // This fallback logic can be removed after the end-of-support for 2.22 on 2021-09-23.
+    if (actions_util_1.isRunningLocalAction()) {
+        // This handles the case where the Action does not come from an Action repository,
+        // e.g. our integration tests which use the Action code from the current checkout.
+        logger.info("The CodeQL Action is checked out locally. Using the default CodeQL Action repository.");
+        return CODEQL_DEFAULT_ACTION_REPOSITORY;
+    }
+    logger.info("GITHUB_ACTION_REPOSITORY environment variable was not set. Falling back to legacy method of finding the GitHub Action.");
+    const relativeScriptPathParts = actions_util_1.getRelativeScriptPath().split(path.sep);
+    return `${relativeScriptPathParts[0]}/${relativeScriptPathParts[1]}`;
 }
-async function getCodeQLBundleDownloadURL() {
-    const codeQLActionRepository = getCodeQLActionRepository();
+async function getCodeQLBundleDownloadURL(apiDetails, mode, logger) {
+    const codeQLActionRepository = getCodeQLActionRepository(mode, logger);
     const potentialDownloadSources = [
         // This GitHub instance, and this Action.
-        [util.getInstanceAPIURL(), codeQLActionRepository],
+        [apiDetails.url, codeQLActionRepository],
         // This GitHub instance, and the canonical Action.
-        [util.getInstanceAPIURL(), CODEQL_DEFAULT_ACTION_REPOSITORY],
+        [apiDetails.url, CODEQL_DEFAULT_ACTION_REPOSITORY],
         // GitHub.com, and the canonical Action.
-        [util.GITHUB_DOTCOM_API_URL, CODEQL_DEFAULT_ACTION_REPOSITORY],
+        [util.GITHUB_DOTCOM_URL, CODEQL_DEFAULT_ACTION_REPOSITORY],
     ];
     // We now filter out any duplicates.
     // Duplicates will happen either because the GitHub instance is GitHub.com, or because the Action is not a fork.
     const uniqueDownloadSources = potentialDownloadSources.filter((url, index, self) => index === self.indexOf(url));
-    for (let downloadSource of uniqueDownloadSources) {
-        let [apiURL, repository] = downloadSource;
+    const codeQLBundleName = getCodeQLBundleName();
+    for (const downloadSource of uniqueDownloadSources) {
+        const [apiURL, repository] = downloadSource;
         // If we've reached the final case, short-circuit the API check since we know the bundle exists and is public.
-        if (apiURL === util.GITHUB_DOTCOM_API_URL && repository === CODEQL_DEFAULT_ACTION_REPOSITORY) {
+        if (apiURL === util.GITHUB_DOTCOM_URL &&
+            repository === CODEQL_DEFAULT_ACTION_REPOSITORY) {
             break;
         }
-        let [repositoryOwner, repositoryName] = repository.split("/");
+        const [repositoryOwner, repositoryName] = repository.split("/");
         try {
-            const release = await api.getActionsApiClient().repos.getReleaseByTag({
+            const release = await api
+                .getApiClient(apiDetails, mode, logger, false, true)
+                .repos.getReleaseByTag({
                 owner: repositoryOwner,
                 repo: repositoryName,
-                tag: CODEQL_BUNDLE_VERSION
+                tag: CODEQL_BUNDLE_VERSION,
             });
-            for (let asset of release.data.assets) {
-                if (asset.name === CODEQL_BUNDLE_NAME) {
-                    core.info(`Found CodeQL bundle in ${downloadSource[1]} on ${downloadSource[0]} with URL ${asset.url}.`);
+            for (const asset of release.data.assets) {
+                if (asset.name === codeQLBundleName) {
+                    logger.info(`Found CodeQL bundle in ${downloadSource[1]} on ${downloadSource[0]} with URL ${asset.url}.`);
                     return asset.url;
                 }
             }
         }
         catch (e) {
-            core.info(`Looked for CodeQL bundle in ${downloadSource[1]} on ${downloadSource[0]} but got error ${e}.`);
+            logger.info(`Looked for CodeQL bundle in ${downloadSource[1]} on ${downloadSource[0]} but got error ${e}.`);
         }
     }
-    return `https://github.com/${CODEQL_DEFAULT_ACTION_REPOSITORY}/releases/download/${CODEQL_BUNDLE_VERSION}/${CODEQL_BUNDLE_NAME}`;
+    return `https://github.com/${CODEQL_DEFAULT_ACTION_REPOSITORY}/releases/download/${CODEQL_BUNDLE_VERSION}/${codeQLBundleName}`;
 }
 // We have to download CodeQL manually because the toolcache doesn't support Accept headers.
 // This can be removed once https://github.com/actions/toolkit/pull/530 is merged and released.
-async function toolcacheDownloadTool(url, headers) {
-    const client = new http.HttpClient('CodeQL Action');
-    const dest = path.join(util.getRequiredEnvParam('RUNNER_TEMP'), v4_1.default());
+async function toolcacheDownloadTool(url, headers, tempDir, logger) {
+    const client = new http.HttpClient("CodeQL Action");
+    const dest = path.join(tempDir, uuid_1.v4());
     const response = await client.get(url, headers);
     if (response.message.statusCode !== 200) {
-        const err = new toolcache.HTTPError(response.message.statusCode);
-        core.info(`Failed to download from "${url}". Code(${response.message.statusCode}) Message(${response.message.statusMessage})`);
-        throw err;
+        logger.info(`Failed to download from "${url}". Code(${response.message.statusCode}) Message(${response.message.statusMessage})`);
+        throw new Error(`Unexpected HTTP response: ${response.message.statusCode}`);
     }
     const pipeline = globalutil.promisify(stream.pipeline);
     fs.mkdirSync(path.dirname(dest), { recursive: true });
     await pipeline(response.message, fs.createWriteStream(dest));
     return dest;
 }
-async function setupCodeQL() {
+async function setupCodeQL(codeqlURL, apiDetails, tempDir, toolsDir, mode, logger) {
+    // Setting these two env vars makes the toolcache code safe to use outside,
+    // of actions but this is obviously not a great thing we're doing and it would
+    // be better to write our own implementation to use outside of actions.
+    process.env["RUNNER_TEMP"] = tempDir;
+    process.env["RUNNER_TOOL_CACHE"] = toolsDir;
     try {
-        let codeqlURL = core.getInput('tools');
+        // We use the special value of 'latest' to prioritize the version in the
+        // defaults over any pinned cached version.
+        const forceLatest = codeqlURL === "latest";
+        if (forceLatest) {
+            codeqlURL = undefined;
+        }
         const codeqlURLVersion = getCodeQLURLVersion(codeqlURL || `/${CODEQL_BUNDLE_VERSION}/`);
-        let codeqlFolder = toolcache.find('CodeQL', codeqlURLVersion);
+        const codeqlURLSemVer = convertToSemVer(codeqlURLVersion, logger);
+        // If we find the specified version, we always use that.
+        let codeqlFolder = toolcache.find("CodeQL", codeqlURLSemVer);
+        // If we don't find the requested version, in some cases we may allow a
+        // different version to save download time if the version hasn't been
+        // specified explicitly (in which case we always honor it).
+        if (!codeqlFolder && !codeqlURL && !forceLatest) {
+            const codeqlVersions = toolcache.findAllVersions("CodeQL");
+            if (codeqlVersions.length === 1) {
+                const tmpCodeqlFolder = toolcache.find("CodeQL", codeqlVersions[0]);
+                if (fs.existsSync(path.join(tmpCodeqlFolder, "pinned-version"))) {
+                    logger.debug(`CodeQL in cache overriding the default ${CODEQL_BUNDLE_VERSION}`);
+                    codeqlFolder = tmpCodeqlFolder;
+                }
+            }
+        }
         if (codeqlFolder) {
-            core.debug(`CodeQL found in cache ${codeqlFolder}`);
+            logger.debug(`CodeQL found in cache ${codeqlFolder}`);
         }
         else {
             if (!codeqlURL) {
-                codeqlURL = await getCodeQLBundleDownloadURL();
+                codeqlURL = await getCodeQLBundleDownloadURL(apiDetails, mode, logger);
             }
-            const headers = { accept: 'application/octet-stream' };
+            const headers = { accept: "application/octet-stream" };
             // We only want to provide an authorization header if we are downloading
             // from the same GitHub instance the Action is running on.
             // This avoids leaking Enterprise tokens to dotcom.
-            if (codeqlURL.startsWith(util.getInstanceAPIURL() + "/")) {
-                core.debug('Downloading CodeQL bundle with token.');
-                let token = core.getInput('token', { required: true });
-                headers.authorization = `token ${token}`;
+            if (codeqlURL.startsWith(`${apiDetails.url}/`)) {
+                logger.debug("Downloading CodeQL bundle with token.");
+                headers.authorization = `token ${apiDetails.auth}`;
             }
             else {
-                core.debug('Downloading CodeQL bundle without token.');
+                logger.debug("Downloading CodeQL bundle without token.");
             }
-            let codeqlPath = await toolcacheDownloadTool(codeqlURL, headers);
-            core.debug(`CodeQL bundle download to ${codeqlPath} complete.`);
+            logger.info(`Downloading CodeQL tools from ${codeqlURL}. This may take a while.`);
+            const codeqlPath = await toolcacheDownloadTool(codeqlURL, headers, tempDir, logger);
+            logger.debug(`CodeQL bundle download to ${codeqlPath} complete.`);
             const codeqlExtracted = await toolcache.extractTar(codeqlPath);
-            codeqlFolder = await toolcache.cacheDir(codeqlExtracted, 'CodeQL', codeqlURLVersion);
+            codeqlFolder = await toolcache.cacheDir(codeqlExtracted, "CodeQL", codeqlURLSemVer);
         }
-        let codeqlCmd = path.join(codeqlFolder, 'codeql', 'codeql');
-        if (process.platform === 'win32') {
+        let codeqlCmd = path.join(codeqlFolder, "codeql", "codeql");
+        if (process.platform === "win32") {
             codeqlCmd += ".exe";
         }
-        else if (process.platform !== 'linux' && process.platform !== 'darwin') {
-            throw new Error("Unsupported platform: " + process.platform);
+        else if (process.platform !== "linux" && process.platform !== "darwin") {
+            throw new Error(`Unsupported platform: ${process.platform}`);
         }
         cachedCodeQL = getCodeQLForCmd(codeqlCmd);
-        core.exportVariable(CODEQL_ACTION_CMD, codeqlCmd);
-        return cachedCodeQL;
+        return { codeql: cachedCodeQL, toolsVersion: codeqlURLVersion };
     }
     catch (e) {
-        core.error(e);
+        logger.error(e);
         throw new Error("Unable to download and extract CodeQL CLI");
     }
 }
@@ -157,30 +197,38 @@ function getCodeQLURLVersion(url) {
     if (match === null || match.length < 2) {
         throw new Error(`Malformed tools url: ${url}. Version could not be inferred`);
     }
-    let version = match[1];
+    return match[1];
+}
+exports.getCodeQLURLVersion = getCodeQLURLVersion;
+function convertToSemVer(version, logger) {
     if (!semver.valid(version)) {
-        core.debug(`Bundle version ${version} is not in SemVer format. Will treat it as pre-release 0.0.0-${version}.`);
-        version = '0.0.0-' + version;
+        logger.debug(`Bundle version ${version} is not in SemVer format. Will treat it as pre-release 0.0.0-${version}.`);
+        version = `0.0.0-${version}`;
     }
     const s = semver.clean(version);
     if (!s) {
-        throw new Error(`Malformed tools url ${url}. Version should be in SemVer format but have ${version} instead`);
+        throw new Error(`Bundle version ${version} is not in SemVer format.`);
     }
     return s;
 }
-exports.getCodeQLURLVersion = getCodeQLURLVersion;
-function getCodeQL() {
+exports.convertToSemVer = convertToSemVer;
+/**
+ * Use the CodeQL executable located at the given path.
+ */
+function getCodeQL(cmd) {
     if (cachedCodeQL === undefined) {
-        const codeqlCmd = util.getRequiredEnvParam(CODEQL_ACTION_CMD);
-        cachedCodeQL = getCodeQLForCmd(codeqlCmd);
+        cachedCodeQL = getCodeQLForCmd(cmd);
     }
     return cachedCodeQL;
 }
 exports.getCodeQL = getCodeQL;
-function resolveFunction(partialCodeql, methodName) {
-    if (typeof partialCodeql[methodName] !== 'function') {
+function resolveFunction(partialCodeql, methodName, defaultImplementation) {
+    if (typeof partialCodeql[methodName] !== "function") {
+        if (defaultImplementation !== undefined) {
+            return defaultImplementation;
+        }
         const dummyMethod = () => {
-            throw new Error('CodeQL ' + methodName + ' method not correctly defined');
+            throw new Error(`CodeQL ${methodName} method not correctly defined`);
         };
         return dummyMethod;
     }
@@ -194,189 +242,219 @@ function resolveFunction(partialCodeql, methodName) {
  */
 function setCodeQL(partialCodeql) {
     cachedCodeQL = {
-        getDir: resolveFunction(partialCodeql, 'getDir'),
-        printVersion: resolveFunction(partialCodeql, 'printVersion'),
-        getTracerEnv: resolveFunction(partialCodeql, 'getTracerEnv'),
-        databaseInit: resolveFunction(partialCodeql, 'databaseInit'),
-        runAutobuild: resolveFunction(partialCodeql, 'runAutobuild'),
-        extractScannedLanguage: resolveFunction(partialCodeql, 'extractScannedLanguage'),
-        finalizeDatabase: resolveFunction(partialCodeql, 'finalizeDatabase'),
-        resolveQueries: resolveFunction(partialCodeql, 'resolveQueries'),
-        databaseAnalyze: resolveFunction(partialCodeql, 'databaseAnalyze')
+        getPath: resolveFunction(partialCodeql, "getPath", () => "/tmp/dummy-path"),
+        printVersion: resolveFunction(partialCodeql, "printVersion"),
+        getTracerEnv: resolveFunction(partialCodeql, "getTracerEnv"),
+        databaseInit: resolveFunction(partialCodeql, "databaseInit"),
+        runAutobuild: resolveFunction(partialCodeql, "runAutobuild"),
+        extractScannedLanguage: resolveFunction(partialCodeql, "extractScannedLanguage"),
+        finalizeDatabase: resolveFunction(partialCodeql, "finalizeDatabase"),
+        resolveQueries: resolveFunction(partialCodeql, "resolveQueries"),
+        databaseAnalyze: resolveFunction(partialCodeql, "databaseAnalyze"),
     };
+    return cachedCodeQL;
 }
 exports.setCodeQL = setCodeQL;
+/**
+ * Get the cached CodeQL object. Should only be used from tests.
+ *
+ * TODO: Work out a good way for tests to get this from the test context
+ * instead of having to have this method.
+ */
+function getCachedCodeQL() {
+    if (cachedCodeQL === undefined) {
+        // Should never happen as setCodeQL is called by testing-utils.setupTests
+        throw new Error("cachedCodeQL undefined");
+    }
+    return cachedCodeQL;
+}
+exports.getCachedCodeQL = getCachedCodeQL;
 function getCodeQLForCmd(cmd) {
     return {
-        getDir: function () {
-            return path.dirname(cmd);
+        getPath() {
+            return cmd;
         },
-        printVersion: async function () {
-            await exec.exec(cmd, [
-                'version',
-                '--format=json'
-            ]);
+        async printVersion() {
+            await new toolrunner.ToolRunner(cmd, ["version", "--format=json"]).exec();
         },
-        getTracerEnv: async function (databasePath, compilerSpec) {
-            let envFile = path.resolve(databasePath, 'working', 'env.tmp');
-            const compilerSpecArg = compilerSpec ? ["--compiler-spec=" + compilerSpec] : [];
-            await exec.exec(cmd, [
-                'database',
-                'trace-command',
+        async getTracerEnv(databasePath) {
+            // Write tracer-env.js to a temp location.
+            const tracerEnvJs = path.resolve(databasePath, "working", "tracer-env.js");
+            fs.mkdirSync(path.dirname(tracerEnvJs), { recursive: true });
+            fs.writeFileSync(tracerEnvJs, `
+        const fs = require('fs');
+        const env = {};
+        for (let entry of Object.entries(process.env)) {
+          const key = entry[0];
+          const value = entry[1];
+          if (typeof value !== 'undefined' && key !== '_' && !key.startsWith('JAVA_MAIN_CLASS_')) {
+            env[key] = value;
+          }
+        }
+        process.stdout.write(process.argv[2]);
+        fs.writeFileSync(process.argv[2], JSON.stringify(env), 'utf-8');`);
+            const envFile = path.resolve(databasePath, "working", "env.tmp");
+            await new toolrunner.ToolRunner(cmd, [
+                "database",
+                "trace-command",
                 databasePath,
-                ...compilerSpecArg,
-                ...getExtraOptionsFromEnv(['database', 'trace-command']),
+                ...getExtraOptionsFromEnv(["database", "trace-command"]),
                 process.execPath,
-                path.resolve(__dirname, 'tracer-env.js'),
-                envFile
-            ]);
-            return JSON.parse(fs.readFileSync(envFile, 'utf-8'));
+                tracerEnvJs,
+                envFile,
+            ]).exec();
+            return JSON.parse(fs.readFileSync(envFile, "utf-8"));
         },
-        databaseInit: async function (databasePath, language, sourceRoot) {
-            await exec.exec(cmd, [
-                'database',
-                'init',
+        async databaseInit(databasePath, language, sourceRoot) {
+            await new toolrunner.ToolRunner(cmd, [
+                "database",
+                "init",
                 databasePath,
-                '--language=' + language,
-                '--source-root=' + sourceRoot,
-                ...getExtraOptionsFromEnv(['database', 'init']),
-            ]);
+                `--language=${language}`,
+                `--source-root=${sourceRoot}`,
+                ...getExtraOptionsFromEnv(["database", "init"]),
+            ]).exec();
         },
-        runAutobuild: async function (language) {
-            const cmdName = process.platform === 'win32' ? 'autobuild.cmd' : 'autobuild.sh';
-            const autobuildCmd = path.join(path.dirname(cmd), language, 'tools', cmdName);
+        async runAutobuild(language) {
+            const cmdName = process.platform === "win32" ? "autobuild.cmd" : "autobuild.sh";
+            const autobuildCmd = path.join(path.dirname(cmd), language, "tools", cmdName);
             // Update JAVA_TOOL_OPTIONS to contain '-Dhttp.keepAlive=false'
             // This is because of an issue with Azure pipelines timing out connections after 4 minutes
             // and Maven not properly handling closed connections
             // Otherwise long build processes will timeout when pulling down Java packages
             // https://developercommunity.visualstudio.com/content/problem/292284/maven-hosted-agent-connection-timeout.html
-            let javaToolOptions = process.env['JAVA_TOOL_OPTIONS'] || "";
-            process.env['JAVA_TOOL_OPTIONS'] = [...javaToolOptions.split(/\s+/), '-Dhttp.keepAlive=false', '-Dmaven.wagon.http.pool=false'].join(' ');
-            await exec.exec(autobuildCmd);
+            const javaToolOptions = process.env["JAVA_TOOL_OPTIONS"] || "";
+            process.env["JAVA_TOOL_OPTIONS"] = [
+                ...javaToolOptions.split(/\s+/),
+                "-Dhttp.keepAlive=false",
+                "-Dmaven.wagon.http.pool=false",
+            ].join(" ");
+            await new toolrunner.ToolRunner(autobuildCmd).exec();
         },
-        extractScannedLanguage: async function (databasePath, language) {
+        async extractScannedLanguage(databasePath, language) {
             // Get extractor location
-            let extractorPath = '';
-            await exec.exec(cmd, [
-                'resolve',
-                'extractor',
-                '--format=json',
-                '--language=' + language,
-                ...getExtraOptionsFromEnv(['resolve', 'extractor']),
+            let extractorPath = "";
+            await new toolrunner.ToolRunner(cmd, [
+                "resolve",
+                "extractor",
+                "--format=json",
+                `--language=${language}`,
+                ...getExtraOptionsFromEnv(["resolve", "extractor"]),
             ], {
                 silent: true,
                 listeners: {
-                    stdout: (data) => { extractorPath += data.toString(); },
-                    stderr: (data) => { process.stderr.write(data); }
-                }
-            });
+                    stdout: (data) => {
+                        extractorPath += data.toString();
+                    },
+                    stderr: (data) => {
+                        process.stderr.write(data);
+                    },
+                },
+            }).exec();
             // Set trace command
-            const ext = process.platform === 'win32' ? '.cmd' : '.sh';
-            const traceCommand = path.resolve(JSON.parse(extractorPath), 'tools', 'autobuild' + ext);
+            const ext = process.platform === "win32" ? ".cmd" : ".sh";
+            const traceCommand = path.resolve(JSON.parse(extractorPath), "tools", `autobuild${ext}`);
             // Run trace command
-            await exec.exec(cmd, [
-                'database',
-                'trace-command',
-                ...getExtraOptionsFromEnv(['database', 'trace-command']),
+            await toolrunner_error_catcher_1.toolrunnerErrorCatcher(cmd, [
+                "database",
+                "trace-command",
+                ...getExtraOptionsFromEnv(["database", "trace-command"]),
                 databasePath,
-                '--',
-                traceCommand
-            ]);
+                "--",
+                traceCommand,
+            ], error_matcher_1.errorMatchers);
         },
-        finalizeDatabase: async function (databasePath) {
-            await exec.exec(cmd, [
-                'database',
-                'finalize',
-                ...getExtraOptionsFromEnv(['database', 'finalize']),
-                databasePath
-            ]);
+        async finalizeDatabase(databasePath, threadsFlag) {
+            await toolrunner_error_catcher_1.toolrunnerErrorCatcher(cmd, [
+                "database",
+                "finalize",
+                threadsFlag,
+                ...getExtraOptionsFromEnv(["database", "finalize"]),
+                databasePath,
+            ], error_matcher_1.errorMatchers);
         },
-        resolveQueries: async function (queries, extraSearchPath) {
+        async resolveQueries(queries, extraSearchPath) {
             const codeqlArgs = [
-                'resolve',
-                'queries',
+                "resolve",
+                "queries",
                 ...queries,
-                '--format=bylanguage',
-                ...getExtraOptionsFromEnv(['resolve', 'queries'])
+                "--format=bylanguage",
+                ...getExtraOptionsFromEnv(["resolve", "queries"]),
             ];
             if (extraSearchPath !== undefined) {
-                codeqlArgs.push('--search-path', extraSearchPath);
+                codeqlArgs.push("--search-path", extraSearchPath);
             }
-            let output = '';
-            await exec.exec(cmd, codeqlArgs, {
+            let output = "";
+            await new toolrunner.ToolRunner(cmd, codeqlArgs, {
                 listeners: {
                     stdout: (data) => {
                         output += data.toString();
-                    }
-                }
-            });
+                    },
+                },
+            }).exec();
             return JSON.parse(output);
         },
-        databaseAnalyze: async function (databasePath, sarifFile, querySuite) {
-            await exec.exec(cmd, [
-                'database',
-                'analyze',
-                util.getMemoryFlag(),
-                util.getThreadsFlag(),
+        async databaseAnalyze(databasePath, sarifFile, querySuite, memoryFlag, addSnippetsFlag, threadsFlag) {
+            await new toolrunner.ToolRunner(cmd, [
+                "database",
+                "analyze",
+                memoryFlag,
+                threadsFlag,
                 databasePath,
-                '--format=sarif-latest',
-                '--output=' + sarifFile,
-                '--no-sarif-add-snippets',
-                ...getExtraOptionsFromEnv(['database', 'analyze']),
-                querySuite
-            ]);
-        }
+                "--min-disk-free=1024",
+                "--format=sarif-latest",
+                "--sarif-multicause-markdown",
+                `--output=${sarifFile}`,
+                addSnippetsFlag,
+                ...getExtraOptionsFromEnv(["database", "analyze"]),
+                querySuite,
+            ]).exec();
+        },
     };
 }
-function isTracedLanguage(language) {
-    return ['cpp', 'java', 'csharp'].includes(language);
-}
-exports.isTracedLanguage = isTracedLanguage;
-function isScannedLanguage(language) {
-    return !isTracedLanguage(language);
-}
-exports.isScannedLanguage = isScannedLanguage;
 /**
  * Gets the options for `path` of `options` as an array of extra option strings.
  */
-function getExtraOptionsFromEnv(path) {
-    let options = util.getExtraOptionsEnvParam();
-    return getExtraOptions(options, path, []);
+function getExtraOptionsFromEnv(paths) {
+    const options = util.getExtraOptionsEnvParam();
+    return getExtraOptions(options, paths, []);
+}
+/**
+ * Gets `options` as an array of extra option strings.
+ *
+ * - throws an exception mentioning `pathInfo` if this conversion is impossible.
+ */
+function asExtraOptions(options, pathInfo) {
+    if (options === undefined) {
+        return [];
+    }
+    if (!Array.isArray(options)) {
+        const msg = `The extra options for '${pathInfo.join(".")}' ('${JSON.stringify(options)}') are not in an array.`;
+        throw new Error(msg);
+    }
+    return options.map((o) => {
+        const t = typeof o;
+        if (t !== "string" && t !== "number" && t !== "boolean") {
+            const msg = `The extra option for '${pathInfo.join(".")}' ('${JSON.stringify(o)}') is not a primitive value.`;
+            throw new Error(msg);
+        }
+        return `${o}`;
+    });
 }
 /**
  * Gets the options for `path` of `options` as an array of extra option strings.
  *
  * - the special terminal step name '*' in `options` matches all path steps
  * - throws an exception if this conversion is impossible.
+ *
+ * Exported for testing.
  */
-function getExtraOptions(options, path, pathInfo) {
+function getExtraOptions(options, paths, pathInfo) {
     var _a, _b, _c;
-    /**
-     * Gets `options` as an array of extra option strings.
-     *
-     * - throws an exception mentioning `pathInfo` if this conversion is impossible.
-     */
-    function asExtraOptions(options, pathInfo) {
-        if (options === undefined) {
-            return [];
-        }
-        if (!Array.isArray(options)) {
-            const msg = `The extra options for '${pathInfo.join('.')}' ('${JSON.stringify(options)}') are not in an array.`;
-            throw new Error(msg);
-        }
-        return options.map(o => {
-            const t = typeof o;
-            if (t !== 'string' && t !== 'number' && t !== 'boolean') {
-                const msg = `The extra option for '${pathInfo.join('.')}' ('${JSON.stringify(o)}') is not a primitive value.`;
-                throw new Error(msg);
-            }
-            return o + '';
-        });
-    }
-    let all = asExtraOptions((_a = options) === null || _a === void 0 ? void 0 : _a['*'], pathInfo.concat('*'));
-    let specific = path.length === 0 ?
-        asExtraOptions(options, pathInfo) :
-        getExtraOptions((_b = options) === null || _b === void 0 ? void 0 : _b[path[0]], (_c = path) === null || _c === void 0 ? void 0 : _c.slice(1), pathInfo.concat(path[0]));
+    const all = asExtraOptions((_a = options) === null || _a === void 0 ? void 0 : _a["*"], pathInfo.concat("*"));
+    const specific = paths.length === 0
+        ? asExtraOptions(options, pathInfo)
+        : getExtraOptions((_b = options) === null || _b === void 0 ? void 0 : _b[paths[0]], (_c = paths) === null || _c === void 0 ? void 0 : _c.slice(1), pathInfo.concat(paths[0]));
     return all.concat(specific);
 }
 exports.getExtraOptions = getExtraOptions;

lib/codeql.test.js

@@ -10,46 +10,116 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+const path = __importStar(require("path"));
 const toolcache = __importStar(require("@actions/tool-cache"));
 const ava_1 = __importDefault(require("ava"));
 const nock_1 = __importDefault(require("nock"));
-const path = __importStar(require("path"));
 const codeql = __importStar(require("./codeql"));
+const defaults = __importStar(require("./defaults.json"));
+const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const util = __importStar(require("./util"));
 testing_utils_1.setupTests(ava_1.default);
-ava_1.default('download codeql bundle cache', async (t) => {
+const sampleApiDetails = {
+    auth: "token",
+    url: "https://github.com",
+};
+ava_1.default("download codeql bundle cache", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        process.env['RUNNER_TEMP'] = path.join(tmpDir, 'temp');
-        process.env['RUNNER_TOOL_CACHE'] = path.join(tmpDir, 'cache');
-        const versions = ['20200601', '20200610'];
+        const versions = ["20200601", "20200610"];
         for (let i = 0; i < versions.length; i++) {
             const version = versions[i];
-            nock_1.default('https://example.com')
+            nock_1.default("https://example.com")
                 .get(`/download/codeql-bundle-${version}/codeql-bundle.tar.gz`)
                 .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-            process.env['INPUT_TOOLS'] = `https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`;
-            await codeql.setupCodeQL();
-            t.assert(toolcache.find('CodeQL', `0.0.0-${version}`));
+            await codeql.setupCodeQL(`https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`, sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+            t.assert(toolcache.find("CodeQL", `0.0.0-${version}`));
         }
-        const cachedVersions = toolcache.findAllVersions('CodeQL');
+        const cachedVersions = toolcache.findAllVersions("CodeQL");
         t.is(cachedVersions.length, 2);
     });
 });
-ava_1.default('parse codeql bundle url version', t => {
+ava_1.default("download codeql bundle cache explicitly requested with pinned different version cached", async (t) => {
+    await util.withTmpDir(async (tmpDir) => {
+        nock_1.default("https://example.com")
+            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
+        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
+        nock_1.default("https://example.com")
+            .get(`/download/codeql-bundle-20200610/codeql-bundle.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
+        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200610/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        t.assert(toolcache.find("CodeQL", "0.0.0-20200610"));
+    });
+});
+ava_1.default("don't download codeql bundle cache with pinned different version cached", async (t) => {
+    await util.withTmpDir(async (tmpDir) => {
+        nock_1.default("https://example.com")
+            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
+        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
+        await codeql.setupCodeQL(undefined, sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        const cachedVersions = toolcache.findAllVersions("CodeQL");
+        t.is(cachedVersions.length, 1);
+    });
+});
+ava_1.default("download codeql bundle cache with different version cached (not pinned)", async (t) => {
+    await util.withTmpDir(async (tmpDir) => {
+        nock_1.default("https://example.com")
+            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
+        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
+        const platform = process.platform === "win32"
+            ? "win64"
+            : process.platform === "linux"
+                ? "linux64"
+                : "osx64";
+        nock_1.default("https://github.com")
+            .get(`/github/codeql-action/releases/download/${defaults.bundleVersion}/codeql-bundle-${platform}.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
+        await codeql.setupCodeQL(undefined, sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        const cachedVersions = toolcache.findAllVersions("CodeQL");
+        t.is(cachedVersions.length, 2);
+    });
+});
+ava_1.default('download codeql bundle cache with pinned different version cached if "latests" tools specified', async (t) => {
+    await util.withTmpDir(async (tmpDir) => {
+        nock_1.default("https://example.com")
+            .get(`/download/codeql-bundle-20200601/codeql-bundle.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle-pinned.tar.gz`));
+        await codeql.setupCodeQL("https://example.com/download/codeql-bundle-20200601/codeql-bundle.tar.gz", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        t.assert(toolcache.find("CodeQL", "0.0.0-20200601"));
+        const platform = process.platform === "win32"
+            ? "win64"
+            : process.platform === "linux"
+                ? "linux64"
+                : "osx64";
+        nock_1.default("https://github.com")
+            .get(`/github/codeql-action/releases/download/${defaults.bundleVersion}/codeql-bundle-${platform}.tar.gz`)
+            .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
+        await codeql.setupCodeQL("latest", sampleApiDetails, tmpDir, tmpDir, "runner", logging_1.getRunnerLogger(true));
+        const cachedVersions = toolcache.findAllVersions("CodeQL");
+        t.is(cachedVersions.length, 2);
+    });
+});
+ava_1.default("parse codeql bundle url version", (t) => {
+    t.deepEqual(codeql.getCodeQLURLVersion("https://github.com/.../codeql-bundle-20200601/..."), "20200601");
+});
+ava_1.default("convert to semver", (t) => {
     const tests = {
-        '20200601': '0.0.0-20200601',
-        '20200601.0': '0.0.0-20200601.0',
-        '20200601.0.0': '20200601.0.0',
-        '1.2.3': '1.2.3',
-        '1.2.3-alpha': '1.2.3-alpha',
-        '1.2.3-beta.1': '1.2.3-beta.1',
+        "20200601": "0.0.0-20200601",
+        "20200601.0": "0.0.0-20200601.0",
+        "20200601.0.0": "20200601.0.0",
+        "1.2.3": "1.2.3",
+        "1.2.3-alpha": "1.2.3-alpha",
+        "1.2.3-beta.1": "1.2.3-beta.1",
     };
     for (const [version, expectedVersion] of Object.entries(tests)) {
-        const url = `https://github.com/.../codeql-bundle-${version}/...`;
         try {
-            const parsedVersion = codeql.getCodeQLURLVersion(url);
+            const parsedVersion = codeql.convertToSemVer(version, logging_1.getRunnerLogger(true));
             t.deepEqual(parsedVersion, expectedVersion);
         }
         catch (e) {
@@ -57,26 +127,26 @@ ava_1.default('parse codeql bundle url version', t => {
         }
     }
 });
-ava_1.default('getExtraOptions works for explicit paths', t => {
-    t.deepEqual(codeql.getExtraOptions({}, ['foo'], []), []);
-    t.deepEqual(codeql.getExtraOptions({ foo: [42] }, ['foo'], []), ['42']);
-    t.deepEqual(codeql.getExtraOptions({ foo: { bar: [42] } }, ['foo', 'bar'], []), ['42']);
+ava_1.default("getExtraOptions works for explicit paths", (t) => {
+    t.deepEqual(codeql.getExtraOptions({}, ["foo"], []), []);
+    t.deepEqual(codeql.getExtraOptions({ foo: [42] }, ["foo"], []), ["42"]);
+    t.deepEqual(codeql.getExtraOptions({ foo: { bar: [42] } }, ["foo", "bar"], []), ["42"]);
 });
-ava_1.default('getExtraOptions works for wildcards', t => {
-    t.deepEqual(codeql.getExtraOptions({ '*': [42] }, ['foo'], []), ['42']);
+ava_1.default("getExtraOptions works for wildcards", (t) => {
+    t.deepEqual(codeql.getExtraOptions({ "*": [42] }, ["foo"], []), ["42"]);
 });
-ava_1.default('getExtraOptions works for wildcards and explicit paths', t => {
-    let o1 = { '*': [42], foo: [87] };
-    t.deepEqual(codeql.getExtraOptions(o1, ['foo'], []), ['42', '87']);
-    let o2 = { '*': [42], foo: [87] };
-    t.deepEqual(codeql.getExtraOptions(o2, ['foo', 'bar'], []), ['42']);
-    let o3 = { '*': [42], foo: { '*': [87], bar: [99] } };
-    let p = ['foo', 'bar'];
-    t.deepEqual(codeql.getExtraOptions(o3, p, []), ['42', '87', '99']);
+ava_1.default("getExtraOptions works for wildcards and explicit paths", (t) => {
+    const o1 = { "*": [42], foo: [87] };
+    t.deepEqual(codeql.getExtraOptions(o1, ["foo"], []), ["42", "87"]);
+    const o2 = { "*": [42], foo: [87] };
+    t.deepEqual(codeql.getExtraOptions(o2, ["foo", "bar"], []), ["42"]);
+    const o3 = { "*": [42], foo: { "*": [87], bar: [99] } };
+    const p = ["foo", "bar"];
+    t.deepEqual(codeql.getExtraOptions(o3, p, []), ["42", "87", "99"]);
 });
-ava_1.default('getExtraOptions throws for bad content', t => {
-    t.throws(() => codeql.getExtraOptions({ '*': 42 }, ['foo'], []));
-    t.throws(() => codeql.getExtraOptions({ foo: 87 }, ['foo'], []));
-    t.throws(() => codeql.getExtraOptions({ '*': [42], foo: { '*': 87, bar: [99] } }, ['foo', 'bar'], []));
+ava_1.default("getExtraOptions throws for bad content", (t) => {
+    t.throws(() => codeql.getExtraOptions({ "*": 42 }, ["foo"], []));
+    t.throws(() => codeql.getExtraOptions({ foo: 87 }, ["foo"], []));
+    t.throws(() => codeql.getExtraOptions({ "*": [42], foo: { "*": 87, bar: [99] } }, ["foo", "bar"], []));
 });
 //# sourceMappingURL=codeql.test.js.map

lib/config-utils.js

@@ -7,28 +7,19 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
 const fs = __importStar(require("fs"));
-const yaml = __importStar(require("js-yaml"));
 const path = __importStar(require("path"));
+const yaml = __importStar(require("js-yaml"));
 const api = __importStar(require("./api-client"));
-const codeql_1 = require("./codeql");
 const externalQueries = __importStar(require("./external-queries"));
-const util = __importStar(require("./util"));
+const languages_1 = require("./languages");
 // Property names from the user-supplied config file.
-const NAME_PROPERTY = 'name';
-const DISABLE_DEFAULT_QUERIES_PROPERTY = 'disable-default-queries';
-const QUERIES_PROPERTY = 'queries';
-const QUERIES_USES_PROPERTY = 'uses';
-const PATHS_IGNORE_PROPERTY = 'paths-ignore';
-const PATHS_PROPERTY = 'paths';
-// All the languages supported by CodeQL
-const ALL_LANGUAGES = ['csharp', 'cpp', 'go', 'java', 'javascript', 'python'];
-// Some alternate names for languages
-const LANGUAGE_ALIASES = {
-    'c': 'cpp',
-    'typescript': 'javascript',
-};
+const NAME_PROPERTY = "name";
+const DISABLE_DEFAULT_QUERIES_PROPERTY = "disable-default-queries";
+const QUERIES_PROPERTY = "queries";
+const QUERIES_USES_PROPERTY = "uses";
+const PATHS_IGNORE_PROPERTY = "paths-ignore";
+const PATHS_PROPERTY = "paths";
 /**
  * A list of queries from https://github.com/github/codeql that
  * we don't want to run. Disabling them here is a quicker alternative to
@@ -39,14 +30,13 @@ const LANGUAGE_ALIASES = {
  * Format is a map from language to an array of path suffixes of .ql files.
  */
 const DISABLED_BUILTIN_QUERIES = {
-    'csharp': [
-        'ql/src/Security Features/CWE-937/VulnerablePackage.ql',
-        'ql/src/Security Features/CWE-451/MissingXFrameOptions.ql',
-    ]
+    csharp: [
+        "ql/src/Security Features/CWE-937/VulnerablePackage.ql",
+        "ql/src/Security Features/CWE-451/MissingXFrameOptions.ql",
+    ],
 };
 function queryIsDisabled(language, query) {
-    return (DISABLED_BUILTIN_QUERIES[language] || [])
-        .some(disabledQuery => query.endsWith(disabledQuery));
+    return (DISABLED_BUILTIN_QUERIES[language] || []).some((disabledQuery) => query.endsWith(disabledQuery));
 }
 /**
  * Asserts that the noDeclaredLanguage and multipleDeclaredLanguages fields are
@@ -56,63 +46,73 @@ function validateQueries(resolvedQueries) {
     const noDeclaredLanguage = resolvedQueries.noDeclaredLanguage;
     const noDeclaredLanguageQueries = Object.keys(noDeclaredLanguage);
     if (noDeclaredLanguageQueries.length !== 0) {
-        throw new Error('The following queries do not declare a language. ' +
-            'Their qlpack.yml files are either missing or is invalid.\n' +
-            noDeclaredLanguageQueries.join('\n'));
+        throw new Error(`${"The following queries do not declare a language. " +
+            "Their qlpack.yml files are either missing or is invalid.\n"}${noDeclaredLanguageQueries.join("\n")}`);
     }
     const multipleDeclaredLanguages = resolvedQueries.multipleDeclaredLanguages;
     const multipleDeclaredLanguagesQueries = Object.keys(multipleDeclaredLanguages);
     if (multipleDeclaredLanguagesQueries.length !== 0) {
-        throw new Error('The following queries declare multiple languages. ' +
-            'Their qlpack.yml files are either missing or is invalid.\n' +
-            multipleDeclaredLanguagesQueries.join('\n'));
+        throw new Error(`${"The following queries declare multiple languages. " +
+            "Their qlpack.yml files are either missing or is invalid.\n"}${multipleDeclaredLanguagesQueries.join("\n")}`);
     }
 }
 /**
  * Run 'codeql resolve queries' and add the results to resultMap
+ *
+ * If a checkout path is given then the queries are assumed to be custom queries
+ * and an error will be thrown if there is anything invalid about the queries.
+ * If a checkout path is not given then the queries are assumed to be builtin
+ * queries, and error checking will be suppressed.
  */
-async function runResolveQueries(resultMap, toResolve, extraSearchPath, errorOnInvalidQueries) {
-    const codeQl = codeql_1.getCodeQL();
-    const resolvedQueries = await codeQl.resolveQueries(toResolve, extraSearchPath);
-    for (const [language, queries] of Object.entries(resolvedQueries.byLanguage)) {
-        if (resultMap[language] === undefined) {
-            resultMap[language] = [];
-        }
-        resultMap[language].push(...Object.keys(queries).filter(q => !queryIsDisabled(language, q)));
-    }
-    if (errorOnInvalidQueries) {
+async function runResolveQueries(codeQL, resultMap, toResolve, extraSearchPath) {
+    const resolvedQueries = await codeQL.resolveQueries(toResolve, extraSearchPath);
+    if (extraSearchPath !== undefined) {
         validateQueries(resolvedQueries);
     }
+    for (const [language, queryPaths] of Object.entries(resolvedQueries.byLanguage)) {
+        if (resultMap[language] === undefined) {
+            resultMap[language] = {
+                builtin: [],
+                custom: [],
+            };
+        }
+        const queries = Object.keys(queryPaths).filter((q) => !queryIsDisabled(language, q));
+        if (extraSearchPath !== undefined) {
+            resultMap[language].custom.push(...queries);
+        }
+        else {
+            resultMap[language].builtin.push(...queries);
+        }
+    }
 }
 /**
  * Get the set of queries included by default.
  */
-async function addDefaultQueries(languages, resultMap) {
-    const suites = languages.map(l => l + '-code-scanning.qls');
-    await runResolveQueries(resultMap, suites, undefined, false);
+async function addDefaultQueries(codeQL, languages, resultMap) {
+    const suites = languages.map((l) => `${l}-code-scanning.qls`);
+    await runResolveQueries(codeQL, resultMap, suites, undefined);
 }
 // The set of acceptable values for built-in suites from the codeql bundle
-const builtinSuites = ['security-extended', 'security-and-quality'];
+const builtinSuites = ["security-extended", "security-and-quality"];
 /**
  * Determine the set of queries associated with suiteName's suites and add them to resultMap.
  * Throws an error if suiteName is not a valid builtin suite.
  */
-async function addBuiltinSuiteQueries(configFile, languages, resultMap, suiteName) {
-    const suite = builtinSuites.find((suite) => suite === suiteName);
-    if (!suite) {
+async function addBuiltinSuiteQueries(languages, codeQL, resultMap, suiteName, configFile) {
+    const found = builtinSuites.find((suite) => suite === suiteName);
+    if (!found) {
         throw new Error(getQueryUsesInvalid(configFile, suiteName));
     }
-    const suites = languages.map(l => l + '-' + suiteName + '.qls');
-    await runResolveQueries(resultMap, suites, undefined, false);
+    const suites = languages.map((l) => `${l}-${suiteName}.qls`);
+    await runResolveQueries(codeQL, resultMap, suites, undefined);
 }
 /**
  * Retrieve the set of queries at localQueryPath and add them to resultMap.
  */
-async function addLocalQueries(configFile, resultMap, localQueryPath) {
+async function addLocalQueries(codeQL, resultMap, localQueryPath, checkoutPath, configFile) {
     // Resolve the local path against the workspace so that when this is
     // passed to codeql it resolves to exactly the path we expect it to resolve to.
-    const workspacePath = fs.realpathSync(util.getRequiredEnvParam('GITHUB_WORKSPACE'));
-    let absoluteQueryPath = path.join(workspacePath, localQueryPath);
+    let absoluteQueryPath = path.join(checkoutPath, localQueryPath);
     // Check the file exists
     if (!fs.existsSync(absoluteQueryPath)) {
         throw new Error(getLocalPathDoesNotExist(configFile, localQueryPath));
@@ -120,23 +120,21 @@ async function addLocalQueries(configFile, resultMap, localQueryPath) {
     // Call this after checking file exists, because it'll fail if file doesn't exist
     absoluteQueryPath = fs.realpathSync(absoluteQueryPath);
     // Check the local path doesn't jump outside the repo using '..' or symlinks
-    if (!(absoluteQueryPath + path.sep).startsWith(workspacePath + path.sep)) {
+    if (!(absoluteQueryPath + path.sep).startsWith(fs.realpathSync(checkoutPath) + path.sep)) {
         throw new Error(getLocalPathOutsideOfRepository(configFile, localQueryPath));
     }
-    // Get the root of the current repo to use when resolving query dependencies
-    const rootOfRepo = util.getRequiredEnvParam('GITHUB_WORKSPACE');
-    await runResolveQueries(resultMap, [absoluteQueryPath], rootOfRepo, true);
+    await runResolveQueries(codeQL, resultMap, [absoluteQueryPath], checkoutPath);
 }
 /**
  * Retrieve the set of queries at the referenced remote repo and add them to resultMap.
  */
-async function addRemoteQueries(configFile, resultMap, queryUses) {
-    let tok = queryUses.split('@');
+async function addRemoteQueries(codeQL, resultMap, queryUses, tempDir, githubUrl, logger, configFile) {
+    let tok = queryUses.split("@");
     if (tok.length !== 2) {
         throw new Error(getQueryUsesInvalid(configFile, queryUses));
     }
     const ref = tok[1];
-    tok = tok[0].split('/');
+    tok = tok[0].split("/");
     // The first token is the owner
     // The second token is the repo
     // The rest is a path, if there is more than one token combine them to form the full path
@@ -144,16 +142,16 @@ async function addRemoteQueries(configFile, resultMap, queryUses) {
         throw new Error(getQueryUsesInvalid(configFile, queryUses));
     }
     // Check none of the parts of the repository name are empty
-    if (tok[0].trim() === '' || tok[1].trim() === '') {
+    if (tok[0].trim() === "" || tok[1].trim() === "") {
         throw new Error(getQueryUsesInvalid(configFile, queryUses));
     }
-    const nwo = tok[0] + '/' + tok[1];
+    const nwo = `${tok[0]}/${tok[1]}`;
     // Checkout the external repository
-    const rootOfRepo = await externalQueries.checkoutExternalRepository(nwo, ref);
+    const checkoutPath = await externalQueries.checkoutExternalRepository(nwo, ref, githubUrl, tempDir, logger);
     const queryPath = tok.length > 2
-        ? path.join(rootOfRepo, tok.slice(2).join('/'))
-        : rootOfRepo;
-    await runResolveQueries(resultMap, [queryPath], rootOfRepo, true);
+        ? path.join(checkoutPath, tok.slice(2).join("/"))
+        : checkoutPath;
+    await runResolveQueries(codeQL, resultMap, [queryPath], checkoutPath);
 }
 /**
  * Parse a query 'uses' field to a discrete set of query files and update resultMap.
@@ -163,23 +161,23 @@ async function addRemoteQueries(configFile, resultMap, queryUses) {
  * local paths starting with './', or references to remote repos, or
  * a finite set of hardcoded terms for builtin suites.
  */
-async function parseQueryUses(configFile, languages, resultMap, queryUses) {
+async function parseQueryUses(languages, codeQL, resultMap, queryUses, tempDir, checkoutPath, githubUrl, logger, configFile) {
     queryUses = queryUses.trim();
     if (queryUses === "") {
         throw new Error(getQueryUsesInvalid(configFile));
     }
     // Check for the local path case before we start trying to parse the repository name
     if (queryUses.startsWith("./")) {
-        await addLocalQueries(configFile, resultMap, queryUses.slice(2));
+        await addLocalQueries(codeQL, resultMap, queryUses.slice(2), checkoutPath, configFile);
         return;
     }
     // Check for one of the builtin suites
-    if (queryUses.indexOf('/') === -1 && queryUses.indexOf('@') === -1) {
-        await addBuiltinSuiteQueries(configFile, languages, resultMap, queryUses);
+    if (queryUses.indexOf("/") === -1 && queryUses.indexOf("@") === -1) {
+        await addBuiltinSuiteQueries(languages, codeQL, resultMap, queryUses, configFile);
         return;
     }
     // Otherwise, must be a reference to another repo
-    await addRemoteQueries(configFile, resultMap, queryUses);
+    await addRemoteQueries(codeQL, resultMap, queryUses, tempDir, githubUrl, logger, configFile);
 }
 // Regex validating stars in paths or paths-ignore entries.
 // The intention is to only allow ** to appear when immediately
@@ -187,155 +185,143 @@ async function parseQueryUses(configFile, languages, resultMap, queryUses) {
 const pathStarsRegex = /.*(?:\*\*[^/].*|\*\*$|[^/]\*\*.*)/;
 // Characters that are supported by filters in workflows, but not by us.
 // See https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#filter-pattern-cheat-sheet
-const filterPatternCharactersRegex = /.*[\?\+\[\]!].*/;
+const filterPatternCharactersRegex = /.*[?+[\]!].*/;
 // Checks that a paths of paths-ignore entry is valid, possibly modifying it
 // to make it valid, or if not possible then throws an error.
-function validateAndSanitisePath(originalPath, propertyName, configFile) {
+function validateAndSanitisePath(originalPath, propertyName, configFile, logger) {
     // Take a copy so we don't modify the original path, so we can still construct error messages
-    let path = originalPath;
+    let newPath = originalPath;
     // All paths are relative to the src root, so strip off leading slashes.
-    while (path.charAt(0) === '/') {
-        path = path.substring(1);
+    while (newPath.charAt(0) === "/") {
+        newPath = newPath.substring(1);
     }
     // Trailing ** are redundant, so strip them off
-    if (path.endsWith('/**')) {
-        path = path.substring(0, path.length - 2);
+    if (newPath.endsWith("/**")) {
+        newPath = newPath.substring(0, newPath.length - 2);
     }
     // An empty path is not allowed as it's meaningless
-    if (path === '') {
-        throw new Error(getConfigFilePropertyError(configFile, propertyName, '"' + originalPath + '" is not an invalid path. ' +
-            'It is not necessary to include it, and it is not allowed to exclude it.'));
+    if (newPath === "") {
+        throw new Error(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" is not an invalid path. ` +
+            `It is not necessary to include it, and it is not allowed to exclude it.`));
     }
     // Check for illegal uses of **
-    if (path.match(pathStarsRegex)) {
-        throw new Error(getConfigFilePropertyError(configFile, propertyName, '"' + originalPath + '" contains an invalid "**" wildcard. ' +
-            'They must be immediately preceeded and followed by a slash as in "/**/", or come at the start or end.'));
+    if (newPath.match(pathStarsRegex)) {
+        throw new Error(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an invalid "**" wildcard. ` +
+            `They must be immediately preceded and followed by a slash as in "/**/", or come at the start or end.`));
     }
     // Check for other regex characters that we don't support.
     // Output a warning so the user knows, but otherwise continue normally.
-    if (path.match(filterPatternCharactersRegex)) {
-        core.warning(getConfigFilePropertyError(configFile, propertyName, '"' + originalPath + '" contains an unsupported character. ' +
-            'The filter pattern characters ?, +, [, ], ! are not supported and will be matched literally.'));
+    if (newPath.match(filterPatternCharactersRegex)) {
+        logger.warning(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an unsupported character. ` +
+            `The filter pattern characters ?, +, [, ], ! are not supported and will be matched literally.`));
     }
     // Ban any uses of backslash for now.
     // This may not play nicely with project layouts.
     // This restriction can be lifted later if we determine they are ok.
-    if (path.indexOf('\\') !== -1) {
-        throw new Error(getConfigFilePropertyError(configFile, propertyName, '"' + originalPath + '" contains an "\\" character. These are not allowed in filters. ' +
-            'If running on windows we recommend using "/" instead for path filters.'));
+    if (newPath.indexOf("\\") !== -1) {
+        throw new Error(getConfigFilePropertyError(configFile, propertyName, `"${originalPath}" contains an "\\" character. These are not allowed in filters. ` +
+            `If running on windows we recommend using "/" instead for path filters.`));
     }
-    return path;
+    return newPath;
 }
 exports.validateAndSanitisePath = validateAndSanitisePath;
+// An undefined configFile in some of these functions indicates that
+// the property was in a workflow file, not a config file
 function getNameInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, NAME_PROPERTY, 'must be a non-empty string');
+    return getConfigFilePropertyError(configFile, NAME_PROPERTY, "must be a non-empty string");
 }
 exports.getNameInvalid = getNameInvalid;
 function getDisableDefaultQueriesInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, DISABLE_DEFAULT_QUERIES_PROPERTY, 'must be a boolean');
+    return getConfigFilePropertyError(configFile, DISABLE_DEFAULT_QUERIES_PROPERTY, "must be a boolean");
 }
 exports.getDisableDefaultQueriesInvalid = getDisableDefaultQueriesInvalid;
 function getQueriesInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, 'must be an array');
+    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY, "must be an array");
 }
 exports.getQueriesInvalid = getQueriesInvalid;
 function getQueryUsesInvalid(configFile, queryUses) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY + '.' + QUERIES_USES_PROPERTY, 'must be a built-in suite (' + builtinSuites.join(' or ') +
-        '), a relative path, or be of the form "owner/repo[/path]@ref"' +
-        (queryUses !== undefined ? '\n Found: ' + queryUses : ''));
+    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `must be a built-in suite (${builtinSuites.join(" or ")}), a relative path, or be of the form "owner/repo[/path]@ref"${queryUses !== undefined ? `\n Found: ${queryUses}` : ""}`);
 }
 exports.getQueryUsesInvalid = getQueryUsesInvalid;
 function getPathsIgnoreInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, PATHS_IGNORE_PROPERTY, 'must be an array of non-empty strings');
+    return getConfigFilePropertyError(configFile, PATHS_IGNORE_PROPERTY, "must be an array of non-empty strings");
 }
 exports.getPathsIgnoreInvalid = getPathsIgnoreInvalid;
 function getPathsInvalid(configFile) {
-    return getConfigFilePropertyError(configFile, PATHS_PROPERTY, 'must be an array of non-empty strings');
+    return getConfigFilePropertyError(configFile, PATHS_PROPERTY, "must be an array of non-empty strings");
 }
 exports.getPathsInvalid = getPathsInvalid;
 function getLocalPathOutsideOfRepository(configFile, localPath) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY + '.' + QUERIES_USES_PROPERTY, 'is invalid as the local path "' + localPath + '" is outside of the repository');
+    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `is invalid as the local path "${localPath}" is outside of the repository`);
 }
 exports.getLocalPathOutsideOfRepository = getLocalPathOutsideOfRepository;
 function getLocalPathDoesNotExist(configFile, localPath) {
-    return getConfigFilePropertyError(configFile, QUERIES_PROPERTY + '.' + QUERIES_USES_PROPERTY, 'is invalid as the local path "' + localPath + '" does not exist in the repository');
+    return getConfigFilePropertyError(configFile, `${QUERIES_PROPERTY}.${QUERIES_USES_PROPERTY}`, `is invalid as the local path "${localPath}" does not exist in the repository`);
 }
 exports.getLocalPathDoesNotExist = getLocalPathDoesNotExist;
 function getConfigFileOutsideWorkspaceErrorMessage(configFile) {
-    return 'The configuration file "' + configFile + '" is outside of the workspace';
+    return `The configuration file "${configFile}" is outside of the workspace`;
 }
 exports.getConfigFileOutsideWorkspaceErrorMessage = getConfigFileOutsideWorkspaceErrorMessage;
 function getConfigFileDoesNotExistErrorMessage(configFile) {
-    return 'The configuration file "' + configFile + '" does not exist';
+    return `The configuration file "${configFile}" does not exist`;
 }
 exports.getConfigFileDoesNotExistErrorMessage = getConfigFileDoesNotExistErrorMessage;
 function getConfigFileRepoFormatInvalidMessage(configFile) {
-    let error = 'The configuration file "' + configFile + '" is not a supported remote file reference.';
-    error += ' Expected format <owner>/<repository>/<file-path>@<ref>';
+    let error = `The configuration file "${configFile}" is not a supported remote file reference.`;
+    error += " Expected format <owner>/<repository>/<file-path>@<ref>";
     return error;
 }
 exports.getConfigFileRepoFormatInvalidMessage = getConfigFileRepoFormatInvalidMessage;
 function getConfigFileFormatInvalidMessage(configFile) {
-    return 'The configuration file "' + configFile + '" could not be read';
+    return `The configuration file "${configFile}" could not be read`;
 }
 exports.getConfigFileFormatInvalidMessage = getConfigFileFormatInvalidMessage;
 function getConfigFileDirectoryGivenMessage(configFile) {
-    return 'The configuration file "' + configFile + '" looks like a directory, not a file';
+    return `The configuration file "${configFile}" looks like a directory, not a file`;
 }
 exports.getConfigFileDirectoryGivenMessage = getConfigFileDirectoryGivenMessage;
 function getConfigFilePropertyError(configFile, property, error) {
-    return 'The configuration file "' + configFile + '" is invalid: property "' + property + '" ' + error;
+    if (configFile === undefined) {
+        return `The workflow property "${property}" is invalid: ${error}`;
+    }
+    else {
+        return `The configuration file "${configFile}" is invalid: property "${property}" ${error}`;
+    }
 }
 function getNoLanguagesError() {
-    return "Did not detect any languages to analyze. " +
-        "Please update input in workflow or check that GitHub detects the correct languages in your repository.";
+    return ("Did not detect any languages to analyze. " +
+        "Please update input in workflow or check that GitHub detects the correct languages in your repository.");
 }
 exports.getNoLanguagesError = getNoLanguagesError;
 function getUnknownLanguagesError(languages) {
-    return "Did not recognise the following languages: " + languages.join(', ');
+    return `Did not recognise the following languages: ${languages.join(", ")}`;
 }
 exports.getUnknownLanguagesError = getUnknownLanguagesError;
 /**
  * Gets the set of languages in the current repository
  */
-async function getLanguagesInRepo() {
-    var _a;
-    // Translate between GitHub's API names for languages and ours
-    const codeqlLanguages = {
-        'C': 'cpp',
-        'C++': 'cpp',
-        'C#': 'csharp',
-        'Go': 'go',
-        'Java': 'java',
-        'JavaScript': 'javascript',
-        'TypeScript': 'javascript',
-        'Python': 'python',
-    };
-    let repo_nwo = (_a = process.env['GITHUB_REPOSITORY']) === null || _a === void 0 ? void 0 : _a.split("/");
-    if (repo_nwo) {
-        let owner = repo_nwo[0];
-        let repo = repo_nwo[1];
-        core.debug(`GitHub repo ${owner} ${repo}`);
-        const response = await api.getActionsApiClient(true).repos.listLanguages({
-            owner,
-            repo
-        });
-        core.debug("Languages API response: " + JSON.stringify(response));
-        // The GitHub API is going to return languages in order of popularity,
-        // When we pick a language to autobuild we want to pick the most popular traced language
-        // Since sets in javascript maintain insertion order, using a set here and then splatting it
-        // into an array gives us an array of languages ordered by popularity
-        let languages = new Set();
-        for (let lang in response.data) {
-            if (lang in codeqlLanguages) {
-                languages.add(codeqlLanguages[lang]);
-            }
+async function getLanguagesInRepo(repository, apiDetails, mode, logger) {
+    logger.debug(`GitHub repo ${repository.owner} ${repository.repo}`);
+    const response = await api
+        .getApiClient(apiDetails, mode, logger, true)
+        .repos.listLanguages({
+        owner: repository.owner,
+        repo: repository.repo,
+    });
+    logger.debug(`Languages API response: ${JSON.stringify(response)}`);
+    // The GitHub API is going to return languages in order of popularity,
+    // When we pick a language to autobuild we want to pick the most popular traced language
+    // Since sets in javascript maintain insertion order, using a set here and then splatting it
+    // into an array gives us an array of languages ordered by popularity
+    const languages = new Set();
+    for (const lang of Object.keys(response.data)) {
+        const parsedLang = languages_1.parseLanguage(lang);
+        if (parsedLang !== undefined) {
+            languages.add(parsedLang);
         }
-        return [...languages];
-    }
-    else {
-        return [];
     }
+    return [...languages];
 }
 /**
  * Get the languages to analyse.
@@ -347,17 +333,17 @@ async function getLanguagesInRepo() {
  * If no languages could be detected from either the workflow or the repository
  * then throw an error.
  */
-async function getLanguages() {
+async function getLanguages(languagesInput, repository, apiDetails, mode, logger) {
     // Obtain from action input 'languages' if set
-    let languages = core.getInput('languages', { required: false })
-        .split(',')
-        .map(x => x.trim())
-        .filter(x => x.length > 0);
-    core.info("Languages from configuration: " + JSON.stringify(languages));
+    let languages = (languagesInput || "")
+        .split(",")
+        .map((x) => x.trim())
+        .filter((x) => x.length > 0);
+    logger.info(`Languages from configuration: ${JSON.stringify(languages)}`);
     if (languages.length === 0) {
         // Obtain languages as all languages in the repo that can be analysed
-        languages = await getLanguagesInRepo();
-        core.info("Automatically detected languages: " + JSON.stringify(languages));
+        languages = await getLanguagesInRepo(repository, apiDetails, mode, logger);
+        logger.info(`Automatically detected languages: ${JSON.stringify(languages)}`);
     }
     // If the languages parameter was not given and no languages were
     // detected then fail here as this is a workflow configuration error.
@@ -365,57 +351,74 @@ async function getLanguages() {
         throw new Error(getNoLanguagesError());
     }
     // Make sure they are supported
-    const checkedLanguages = [];
+    const parsedLanguages = [];
     const unknownLanguages = [];
-    for (let language of languages) {
-        // Normalise to lower case
-        language = language.toLowerCase();
-        // Resolve any known aliases
-        if (language in LANGUAGE_ALIASES) {
-            language = LANGUAGE_ALIASES[language];
-        }
-        const checkedLanguage = ALL_LANGUAGES.find(l => l === language);
-        if (checkedLanguage === undefined) {
+    for (const language of languages) {
+        const parsedLanguage = languages_1.parseLanguage(language);
+        if (parsedLanguage === undefined) {
             unknownLanguages.push(language);
         }
-        else if (checkedLanguages.indexOf(checkedLanguage) === -1) {
-            checkedLanguages.push(checkedLanguage);
+        else if (parsedLanguages.indexOf(parsedLanguage) === -1) {
+            parsedLanguages.push(parsedLanguage);
         }
     }
     if (unknownLanguages.length > 0) {
         throw new Error(getUnknownLanguagesError(unknownLanguages));
     }
-    return checkedLanguages;
+    return parsedLanguages;
+}
+async function addQueriesFromWorkflow(codeQL, queriesInput, languages, resultMap, tempDir, checkoutPath, githubUrl, logger) {
+    queriesInput = queriesInput.trim();
+    // "+" means "don't override config file" - see shouldAddConfigFileQueries
+    queriesInput = queriesInput.replace(/^\+/, "");
+    for (const query of queriesInput.split(",")) {
+        await parseQueryUses(languages, codeQL, resultMap, query, tempDir, checkoutPath, githubUrl, logger);
+    }
+}
+// Returns true if either no queries were provided in the workflow.
+// or if the queries in the workflow were provided in "additive" mode,
+// indicating that they shouldn't override the config queries but
+// should instead be added in addition
+function shouldAddConfigFileQueries(queriesInput) {
+    if (queriesInput) {
+        return queriesInput.trimStart().substr(0, 1) === "+";
+    }
+    return true;
 }
 /**
  * Get the default config for when the user has not supplied one.
  */
-async function getDefaultConfig() {
-    const languages = await getLanguages();
+async function getDefaultConfig(languagesInput, queriesInput, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger) {
+    const languages = await getLanguages(languagesInput, repository, apiDetails, mode, logger);
     const queries = {};
-    await addDefaultQueries(languages, queries);
+    await addDefaultQueries(codeQL, languages, queries);
+    if (queriesInput) {
+        await addQueriesFromWorkflow(codeQL, queriesInput, languages, queries, tempDir, checkoutPath, apiDetails.url, logger);
+    }
     return {
-        languages: languages,
-        queries: queries,
+        languages,
+        queries,
         pathsIgnore: [],
         paths: [],
         originalUserInput: {},
+        tempDir,
+        toolCacheDir,
+        codeQLCmd: codeQL.getPath(),
     };
 }
 exports.getDefaultConfig = getDefaultConfig;
 /**
  * Load the config from the given file.
  */
-async function loadConfig(configFile) {
+async function loadConfig(languagesInput, queriesInput, configFile, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger) {
     let parsedYAML;
     if (isLocal(configFile)) {
         // Treat the config file as relative to the workspace
-        const workspacePath = util.getRequiredEnvParam('GITHUB_WORKSPACE');
-        configFile = path.resolve(workspacePath, configFile);
-        parsedYAML = getLocalConfig(configFile, workspacePath);
+        configFile = path.resolve(checkoutPath, configFile);
+        parsedYAML = getLocalConfig(configFile, checkoutPath);
     }
     else {
-        parsedYAML = await getRemoteConfig(configFile);
+        parsedYAML = await getRemoteConfig(configFile, apiDetails, mode, logger);
     }
     // Validate that the 'name' property is syntactically correct,
     // even though we don't use the value yet.
@@ -427,7 +430,7 @@ async function loadConfig(configFile) {
             throw new Error(getNameInvalid(configFile));
         }
     }
-    const languages = await getLanguages();
+    const languages = await getLanguages(languagesInput, repository, apiDetails, mode, logger);
     const queries = {};
     const pathsIgnore = [];
     const paths = [];
@@ -439,45 +442,56 @@ async function loadConfig(configFile) {
         disableDefaultQueries = parsedYAML[DISABLE_DEFAULT_QUERIES_PROPERTY];
     }
     if (!disableDefaultQueries) {
-        await addDefaultQueries(languages, queries);
+        await addDefaultQueries(codeQL, languages, queries);
     }
-    if (QUERIES_PROPERTY in parsedYAML) {
+    // If queries were provided using `with` in the action configuration,
+    // they should take precedence over the queries in the config file
+    // unless they're prefixed with "+", in which case they supplement those
+    // in the config file.
+    if (queriesInput) {
+        await addQueriesFromWorkflow(codeQL, queriesInput, languages, queries, tempDir, checkoutPath, apiDetails.url, logger);
+    }
+    if (shouldAddConfigFileQueries(queriesInput) &&
+        QUERIES_PROPERTY in parsedYAML) {
         if (!(parsedYAML[QUERIES_PROPERTY] instanceof Array)) {
             throw new Error(getQueriesInvalid(configFile));
         }
         for (const query of parsedYAML[QUERIES_PROPERTY]) {
-            if (!(QUERIES_USES_PROPERTY in query) || typeof query[QUERIES_USES_PROPERTY] !== "string") {
+            if (!(QUERIES_USES_PROPERTY in query) ||
+                typeof query[QUERIES_USES_PROPERTY] !== "string") {
                 throw new Error(getQueryUsesInvalid(configFile));
             }
-            await parseQueryUses(configFile, languages, queries, query[QUERIES_USES_PROPERTY]);
+            await parseQueryUses(languages, codeQL, queries, query[QUERIES_USES_PROPERTY], tempDir, checkoutPath, apiDetails.url, logger, configFile);
         }
     }
     if (PATHS_IGNORE_PROPERTY in parsedYAML) {
         if (!(parsedYAML[PATHS_IGNORE_PROPERTY] instanceof Array)) {
             throw new Error(getPathsIgnoreInvalid(configFile));
         }
-        parsedYAML[PATHS_IGNORE_PROPERTY].forEach(path => {
-            if (typeof path !== "string" || path === '') {
+        for (const ignorePath of parsedYAML[PATHS_IGNORE_PROPERTY]) {
+            if (typeof ignorePath !== "string" || ignorePath === "") {
                 throw new Error(getPathsIgnoreInvalid(configFile));
             }
-            pathsIgnore.push(validateAndSanitisePath(path, PATHS_IGNORE_PROPERTY, configFile));
-        });
+            pathsIgnore.push(validateAndSanitisePath(ignorePath, PATHS_IGNORE_PROPERTY, configFile, logger));
+        }
     }
     if (PATHS_PROPERTY in parsedYAML) {
         if (!(parsedYAML[PATHS_PROPERTY] instanceof Array)) {
             throw new Error(getPathsInvalid(configFile));
         }
-        parsedYAML[PATHS_PROPERTY].forEach(path => {
-            if (typeof path !== "string" || path === '') {
+        for (const includePath of parsedYAML[PATHS_PROPERTY]) {
+            if (typeof includePath !== "string" || includePath === "") {
                 throw new Error(getPathsInvalid(configFile));
             }
-            paths.push(validateAndSanitisePath(path, PATHS_PROPERTY, configFile));
-        });
+            paths.push(validateAndSanitisePath(includePath, PATHS_PROPERTY, configFile, logger));
+        }
     }
     // The list of queries should not be empty for any language. If it is then
     // it is a user configuration error.
     for (const language of languages) {
-        if (queries[language] === undefined || queries[language].length === 0) {
+        if (queries[language] === undefined ||
+            (queries[language].builtin.length === 0 &&
+                queries[language].custom.length === 0)) {
             throw new Error(`Did not detect any queries to run for ${language}. ` +
                 "Please make sure that the default queries are enabled, or you are specifying queries to run.");
         }
@@ -487,7 +501,10 @@ async function loadConfig(configFile) {
         queries,
         pathsIgnore,
         paths,
-        originalUserInput: parsedYAML
+        originalUserInput: parsedYAML,
+        tempDir,
+        toolCacheDir,
+        codeQLCmd: codeQL.getPath(),
     };
 }
 /**
@@ -496,19 +513,18 @@ async function loadConfig(configFile) {
  * This will parse the config from the user input if present, or generate
  * a default config. The parsed config is then stored to a known location.
  */
-async function initConfig() {
-    const configFile = core.getInput('config-file');
+async function initConfig(languagesInput, queriesInput, configFile, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger) {
     let config;
     // If no config file was provided create an empty one
-    if (configFile === '') {
-        core.debug('No configuration file was provided');
-        config = await getDefaultConfig();
+    if (!configFile) {
+        logger.debug("No configuration file was provided");
+        config = await getDefaultConfig(languagesInput, queriesInput, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger);
     }
     else {
-        config = await loadConfig(configFile);
+        config = await loadConfig(languagesInput, queriesInput, configFile, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger);
     }
     // Save the config so we can easily access it again in the future
-    await saveConfig(config);
+    await saveConfig(config, logger);
     return config;
 }
 exports.initConfig = initConfig;
@@ -517,28 +533,30 @@ function isLocal(configPath) {
     if (configPath.indexOf("./") === 0) {
         return true;
     }
-    return (configPath.indexOf("@") === -1);
+    return configPath.indexOf("@") === -1;
 }
-function getLocalConfig(configFile, workspacePath) {
+function getLocalConfig(configFile, checkoutPath) {
     // Error if the config file is now outside of the workspace
-    if (!(configFile + path.sep).startsWith(workspacePath + path.sep)) {
+    if (!(configFile + path.sep).startsWith(checkoutPath + path.sep)) {
         throw new Error(getConfigFileOutsideWorkspaceErrorMessage(configFile));
     }
     // Error if the file does not exist
     if (!fs.existsSync(configFile)) {
         throw new Error(getConfigFileDoesNotExistErrorMessage(configFile));
     }
-    return yaml.safeLoad(fs.readFileSync(configFile, 'utf8'));
+    return yaml.safeLoad(fs.readFileSync(configFile, "utf8"));
 }
-async function getRemoteConfig(configFile) {
+async function getRemoteConfig(configFile, apiDetails, mode, logger) {
     // retrieve the various parts of the config location, and ensure they're present
-    const format = new RegExp('(?<owner>[^/]+)/(?<repo>[^/]+)/(?<path>[^@]+)@(?<ref>.*)');
+    const format = new RegExp("(?<owner>[^/]+)/(?<repo>[^/]+)/(?<path>[^@]+)@(?<ref>.*)");
     const pieces = format.exec(configFile);
     // 5 = 4 groups + the whole expression
     if (pieces === null || pieces.groups === undefined || pieces.length < 5) {
         throw new Error(getConfigFileRepoFormatInvalidMessage(configFile));
     }
-    const response = await api.getActionsApiClient(true).repos.getContents({
+    const response = await api
+        .getApiClient(apiDetails, mode, logger, true)
+        .repos.getContent({
         owner: pieces.groups.owner,
         repo: pieces.groups.repo,
         path: pieces.groups.path,
@@ -554,42 +572,38 @@ async function getRemoteConfig(configFile) {
     else {
         throw new Error(getConfigFileFormatInvalidMessage(configFile));
     }
-    return yaml.safeLoad(Buffer.from(fileContents, 'base64').toString('binary'));
+    return yaml.safeLoad(Buffer.from(fileContents, "base64").toString("binary"));
 }
 /**
  * Get the file path where the parsed config will be stored.
  */
-function getPathToParsedConfigFile() {
-    return path.join(util.getRequiredEnvParam('RUNNER_TEMP'), 'config');
+function getPathToParsedConfigFile(tempDir) {
+    return path.join(tempDir, "config");
 }
 exports.getPathToParsedConfigFile = getPathToParsedConfigFile;
 /**
  * Store the given config to the path returned from getPathToParsedConfigFile.
  */
-async function saveConfig(config) {
+async function saveConfig(config, logger) {
     const configString = JSON.stringify(config);
-    const configFile = getPathToParsedConfigFile();
+    const configFile = getPathToParsedConfigFile(config.tempDir);
     fs.mkdirSync(path.dirname(configFile), { recursive: true });
-    fs.writeFileSync(configFile, configString, 'utf8');
-    core.debug('Saved config:');
-    core.debug(configString);
+    fs.writeFileSync(configFile, configString, "utf8");
+    logger.debug("Saved config:");
+    logger.debug(configString);
 }
 /**
- * Get the config.
- *
- * If this is the first time in a workflow that this is being called then
- * this will parse the config from the user input. The parsed config is then
- * stored to a known location. On the second and further calls, this will
- * return the contents of the parsed config from the known location.
+ * Get the config that has been saved to the given temp dir.
+ * If the config could not be found then returns undefined.
  */
-async function getConfig() {
-    const configFile = getPathToParsedConfigFile();
+async function getConfig(tempDir, logger) {
+    const configFile = getPathToParsedConfigFile(tempDir);
     if (!fs.existsSync(configFile)) {
-        throw new Error("Config file could not be found at expected location. Has the 'init' action been called?");
+        return undefined;
     }
-    const configString = fs.readFileSync(configFile, 'utf8');
-    core.debug('Loaded config:');
-    core.debug(configString);
+    const configString = fs.readFileSync(configFile, "utf8");
+    logger.debug("Loaded config:");
+    logger.debug(configString);
     return JSON.parse(configString);
 }
 exports.getConfig = getConfig;

lib/config-utils.test.js

@@ -10,41 +10,44 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const github = __importStar(require("@actions/github"));
-const ava_1 = __importDefault(require("ava"));
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+const github = __importStar(require("@actions/github"));
+const ava_1 = __importDefault(require("ava"));
 const sinon_1 = __importDefault(require("sinon"));
 const api = __importStar(require("./api-client"));
-const CodeQL = __importStar(require("./codeql"));
+const codeql_1 = require("./codeql");
 const configUtils = __importStar(require("./config-utils"));
+const languages_1 = require("./languages");
+const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const util = __importStar(require("./util"));
 testing_utils_1.setupTests(ava_1.default);
-function setInput(name, value) {
-    // Transformation copied from
-    // https://github.com/actions/toolkit/blob/05e39f551d33e1688f61b209ab5cdd335198f1b8/packages/core/src/core.ts#L69
-    const envVar = `INPUT_${name.replace(/ /g, '_').toUpperCase()}`;
-    if (value !== undefined) {
-        process.env[envVar] = value;
-    }
-    else {
-        delete process.env[envVar];
-    }
+const sampleApiDetails = {
+    auth: "token",
+    url: "https://github.example.com",
+};
+// Returns the filepath of the newly-created file
+function createConfigFile(inputFileContents, tmpDir) {
+    const configFilePath = path.join(tmpDir, "input");
+    fs.writeFileSync(configFilePath, inputFileContents, "utf8");
+    return configFilePath;
 }
 function mockGetContents(content) {
     // Passing an auth token is required, so we just use a dummy value
-    let client = new github.GitHub('123');
+    const client = github.getOctokit("123");
     const response = {
-        data: content
+        data: content,
     };
-    const spyGetContents = sinon_1.default.stub(client.repos, "getContents").resolves(response);
+    const spyGetContents = sinon_1.default
+        .stub(client.repos, "getContent")
+        .resolves(response);
     sinon_1.default.stub(api, "getApiClient").value(() => client);
     return spyGetContents;
 }
 function mockListLanguages(languages) {
     // Passing an auth token is required, so we just use a dummy value
-    let client = new github.GitHub('123');
+    const client = github.getOctokit("123");
     const response = {
         data: {},
     };
@@ -56,12 +59,10 @@ function mockListLanguages(languages) {
 }
 ava_1.default("load empty config", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        setInput('config-file', undefined);
-        setInput('languages', 'javascript,python');
-        CodeQL.setCodeQL({
-            resolveQueries: async function () {
+        const logger = logging_1.getRunnerLogger(true);
+        const languages = "javascript,python";
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries() {
                 return {
                     byLanguage: {},
                     noDeclaredLanguage: {},
@@ -69,18 +70,15 @@ ava_1.default("load empty config", async (t) => {
                 };
             },
         });
-        const config = await configUtils.initConfig();
-        t.deepEqual(config, await configUtils.getDefaultConfig());
+        const config = await configUtils.initConfig(languages, undefined, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logger);
+        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logger));
     });
 });
 ava_1.default("loading config saves config", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        setInput('config-file', undefined);
-        setInput('languages', 'javascript,python');
-        CodeQL.setCodeQL({
-            resolveQueries: async function () {
+        const logger = logging_1.getRunnerLogger(true);
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries() {
                 return {
                     byLanguage: {},
                     noDeclaredLanguage: {},
@@ -89,73 +87,64 @@ ava_1.default("loading config saves config", async (t) => {
             },
         });
         // Sanity check the saved config file does not already exist
-        t.false(fs.existsSync(configUtils.getPathToParsedConfigFile()));
-        // Sanity check that getConfig throws before we have called initConfig
-        await t.throwsAsync(configUtils.getConfig);
-        const config1 = await configUtils.initConfig();
+        t.false(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
+        // Sanity check that getConfig returns undefined before we have called initConfig
+        t.deepEqual(await configUtils.getConfig(tmpDir, logger), undefined);
+        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logger);
         // The saved config file should now exist
-        t.true(fs.existsSync(configUtils.getPathToParsedConfigFile()));
+        t.true(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
         // And that same newly-initialised config should now be returned by getConfig
-        const config2 = await configUtils.getConfig();
+        const config2 = await configUtils.getConfig(tmpDir, logger);
         t.deepEqual(config1, config2);
     });
 });
 ava_1.default("load input outside of workspace", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        setInput('config-file', '../input');
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(undefined, undefined, "../input", { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
-            t.deepEqual(err, new Error(configUtils.getConfigFileOutsideWorkspaceErrorMessage(path.join(tmpDir, '../input'))));
+            t.deepEqual(err, new Error(configUtils.getConfigFileOutsideWorkspaceErrorMessage(path.join(tmpDir, "../input"))));
         }
     });
 });
 ava_1.default("load non-local input with invalid repo syntax", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
         // no filename given, just a repo
-        setInput('config-file', 'octo-org/codeql-config@main');
+        const configFile = "octo-org/codeql-config@main";
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(undefined, undefined, configFile, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
-            t.deepEqual(err, new Error(configUtils.getConfigFileRepoFormatInvalidMessage('octo-org/codeql-config@main')));
+            t.deepEqual(err, new Error(configUtils.getConfigFileRepoFormatInvalidMessage("octo-org/codeql-config@main")));
         }
     });
 });
 ava_1.default("load non-existent input", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        t.false(fs.existsSync(path.join(tmpDir, 'input')));
-        setInput('config-file', 'input');
-        setInput('languages', 'javascript');
+        const languages = "javascript";
+        const configFile = "input";
+        t.false(fs.existsSync(path.join(tmpDir, configFile)));
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(languages, undefined, configFile, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
-            t.deepEqual(err, new Error(configUtils.getConfigFileDoesNotExistErrorMessage(path.join(tmpDir, 'input'))));
+            t.deepEqual(err, new Error(configUtils.getConfigFileDoesNotExistErrorMessage(path.join(tmpDir, "input"))));
         }
     });
 });
 ava_1.default("load non-empty input", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        CodeQL.setCodeQL({
-            resolveQueries: async function () {
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries() {
                 return {
                     byLanguage: {
-                        'javascript': {
-                            '/foo/a.ql': {},
-                            '/bar/b.ql': {},
+                        javascript: {
+                            "/foo/a.ql": {},
+                            "/bar/b.ql": {},
                         },
                     },
                     noDeclaredLanguage: {},
@@ -174,46 +163,51 @@ ava_1.default("load non-empty input", async (t) => {
         - b
       paths:
         - c/d`;
-        fs.mkdirSync(path.join(tmpDir, 'foo'));
+        fs.mkdirSync(path.join(tmpDir, "foo"));
         // And the config we expect it to parse to
         const expectedConfig = {
-            languages: ['javascript'],
-            queries: { 'javascript': ['/foo/a.ql', '/bar/b.ql'] },
-            pathsIgnore: ['a', 'b'],
-            paths: ['c/d'],
-            originalUserInput: {
-                name: 'my config',
-                'disable-default-queries': true,
-                queries: [{ uses: './foo' }],
-                'paths-ignore': ['a', 'b'],
-                paths: ['c/d'],
+            languages: [languages_1.Language.javascript],
+            queries: {
+                javascript: {
+                    builtin: [],
+                    custom: ["/foo/a.ql", "/bar/b.ql"],
+                },
             },
+            pathsIgnore: ["a", "b"],
+            paths: ["c/d"],
+            originalUserInput: {
+                name: "my config",
+                "disable-default-queries": true,
+                queries: [{ uses: "./foo" }],
+                "paths-ignore": ["a", "b"],
+                paths: ["c/d"],
+            },
+            tempDir: tmpDir,
+            toolCacheDir: tmpDir,
+            codeQLCmd: codeQL.getPath(),
         };
-        fs.writeFileSync(path.join(tmpDir, 'input'), inputFileContents, 'utf8');
-        setInput('config-file', 'input');
-        setInput('languages', 'javascript');
-        const actualConfig = await configUtils.initConfig();
+        const languages = "javascript";
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        const actualConfig = await configUtils.initConfig(languages, undefined, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
         // Should exactly equal the object we constructed earlier
         t.deepEqual(actualConfig, expectedConfig);
     });
 });
-ava_1.default("default queries are used", async (t) => {
+ava_1.default("Default queries are used", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
         // Check that the default behaviour is to add the default queries.
         // In this case if a config file is specified but does not include
         // the disable-default-queries field.
         // We determine this by whether CodeQL.resolveQueries is called
         // with the correct arguments.
         const resolveQueriesArgs = [];
-        CodeQL.setCodeQL({
-            resolveQueries: async function (queries, extraSearchPath) {
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
                 resolveQueriesArgs.push({ queries, extraSearchPath });
                 return {
                     byLanguage: {
-                        'javascript': {
-                            'foo.ql': {},
+                        javascript: {
+                            "foo.ql": {},
                         },
                     },
                     noDeclaredLanguage: {},
@@ -223,31 +217,241 @@ ava_1.default("default queries are used", async (t) => {
         });
         // The important point of this config is that it doesn't specify
         // the disable-default-queries field.
-        // Any other details are hopefully irrelevant for this tetst.
+        // Any other details are hopefully irrelevant for this test.
         const inputFileContents = `
       paths:
         - foo`;
-        fs.mkdirSync(path.join(tmpDir, 'foo'));
-        fs.writeFileSync(path.join(tmpDir, 'input'), inputFileContents, 'utf8');
-        setInput('config-file', 'input');
-        setInput('languages', 'javascript');
-        await configUtils.initConfig();
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        const languages = "javascript";
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        await configUtils.initConfig(languages, undefined, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
         // Check resolve queries was called correctly
         t.deepEqual(resolveQueriesArgs.length, 1);
-        t.deepEqual(resolveQueriesArgs[0].queries, ['javascript-code-scanning.qls']);
+        t.deepEqual(resolveQueriesArgs[0].queries, [
+            "javascript-code-scanning.qls",
+        ]);
         t.deepEqual(resolveQueriesArgs[0].extraSearchPath, undefined);
     });
 });
+/**
+ * Returns the provided queries, just in the right format for a resolved query
+ * This way we can test by seeing which returned items are in the final
+ * configuration.
+ */
+function queriesToResolvedQueryForm(queries) {
+    const dummyResolvedQueries = {};
+    for (const q of queries) {
+        dummyResolvedQueries[q] = {};
+    }
+    return {
+        byLanguage: {
+            javascript: dummyResolvedQueries,
+        },
+        noDeclaredLanguage: {},
+        multipleDeclaredLanguages: {},
+    };
+}
+ava_1.default("Queries can be specified in config file", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const inputFileContents = `
+      name: my config
+      queries:
+        - uses: ./foo`;
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        const resolveQueriesArgs = [];
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+        });
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, undefined, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for the default queries
+        // and once for `./foo` from the config file.
+        t.deepEqual(resolveQueriesArgs.length, 2);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.regex(resolveQueriesArgs[1].queries[0], /.*\/foo$/);
+        // Now check that the end result contains the default queries and the query from config
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 1);
+        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
+        t.regex(config.queries["javascript"].custom[0], /.*\/foo$/);
+    });
+});
+ava_1.default("Queries from config file can be overridden in workflow file", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const inputFileContents = `
+      name: my config
+      queries:
+        - uses: ./foo`;
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        // This config item should take precedence over the config file but shouldn't affect the default queries.
+        const testQueries = "./override";
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        fs.mkdirSync(path.join(tmpDir, "override"));
+        const resolveQueriesArgs = [];
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+        });
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, testQueries, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for the default queries and once for `./override`,
+        // but won't be called for './foo' from the config file.
+        t.deepEqual(resolveQueriesArgs.length, 2);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.regex(resolveQueriesArgs[1].queries[0], /.*\/override$/);
+        // Now check that the end result contains only the default queries and the override query
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 1);
+        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
+        t.regex(config.queries["javascript"].custom[0], /.*\/override$/);
+    });
+});
+ava_1.default("Queries in workflow file can be used in tandem with the 'disable default queries' option", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env["RUNNER_TEMP"] = tmpDir;
+        process.env["GITHUB_WORKSPACE"] = tmpDir;
+        const inputFileContents = `
+      name: my config
+      disable-default-queries: true`;
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        const testQueries = "./workflow-query";
+        fs.mkdirSync(path.join(tmpDir, "workflow-query"));
+        const resolveQueriesArgs = [];
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+        });
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, testQueries, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for `./workflow-query`,
+        // but won't be called for the default one since that was disabled
+        t.deepEqual(resolveQueriesArgs.length, 1);
+        t.deepEqual(resolveQueriesArgs[0].queries.length, 1);
+        t.regex(resolveQueriesArgs[0].queries[0], /.*\/workflow-query$/);
+        // Now check that the end result contains only the workflow query, and not the default one
+        t.deepEqual(config.queries["javascript"].builtin.length, 0);
+        t.deepEqual(config.queries["javascript"].custom.length, 1);
+        t.regex(config.queries["javascript"].custom[0], /.*\/workflow-query$/);
+    });
+});
+ava_1.default("Multiple queries can be specified in workflow file, no config file required", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        fs.mkdirSync(path.join(tmpDir, "override1"));
+        fs.mkdirSync(path.join(tmpDir, "override2"));
+        const testQueries = "./override1,./override2";
+        const resolveQueriesArgs = [];
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+        });
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, testQueries, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+        // Check resolveQueries was called correctly:
+        // It'll be called once for the default queries,
+        // and then once for each of the two queries from the workflow
+        t.deepEqual(resolveQueriesArgs.length, 3);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
+        t.regex(resolveQueriesArgs[1].queries[0], /.*\/override1$/);
+        t.regex(resolveQueriesArgs[2].queries[0], /.*\/override2$/);
+        // Now check that the end result contains both the queries from the workflow, as well as the defaults
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 2);
+        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
+        t.regex(config.queries["javascript"].custom[0], /.*\/override1$/);
+        t.regex(config.queries["javascript"].custom[1], /.*\/override2$/);
+    });
+});
+ava_1.default("Queries in workflow file can be added to the set of queries without overriding config file", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env["RUNNER_TEMP"] = tmpDir;
+        process.env["GITHUB_WORKSPACE"] = tmpDir;
+        const inputFileContents = `
+      name: my config
+      queries:
+        - uses: ./foo`;
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        // These queries shouldn't override anything, because the value is prefixed with "+"
+        const testQueries = "+./additional1,./additional2";
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        fs.mkdirSync(path.join(tmpDir, "additional1"));
+        fs.mkdirSync(path.join(tmpDir, "additional2"));
+        const resolveQueriesArgs = [];
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+        });
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, testQueries, configFilePath, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for the default queries,
+        // once for each of additional1 and additional2,
+        // and once for './foo' from the config file
+        t.deepEqual(resolveQueriesArgs.length, 4);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.regex(resolveQueriesArgs[1].queries[0], /.*\/additional1$/);
+        t.deepEqual(resolveQueriesArgs[2].queries.length, 1);
+        t.regex(resolveQueriesArgs[2].queries[0], /.*\/additional2$/);
+        t.deepEqual(resolveQueriesArgs[3].queries.length, 1);
+        t.regex(resolveQueriesArgs[3].queries[0], /.*\/foo$/);
+        // Now check that the end result contains all the queries
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 3);
+        t.regex(config.queries["javascript"].builtin[0], /javascript-code-scanning.qls$/);
+        t.regex(config.queries["javascript"].custom[0], /.*\/additional1$/);
+        t.regex(config.queries["javascript"].custom[1], /.*\/additional2$/);
+        t.regex(config.queries["javascript"].custom[2], /.*\/foo$/);
+    });
+});
+ava_1.default("Invalid queries in workflow file handled correctly", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const queries = "foo/bar@v1@v3";
+        const languages = "javascript";
+        // This function just needs to be type-correct; it doesn't need to do anything,
+        // since we're deliberately passing in invalid data
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries(_queries, _extraSearchPath) {
+                return {
+                    byLanguage: {
+                        javascript: {},
+                    },
+                    noDeclaredLanguage: {},
+                    multipleDeclaredLanguages: {},
+                };
+            },
+        });
+        try {
+            await configUtils.initConfig(languages, queries, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            t.fail("initConfig did not throw error");
+        }
+        catch (err) {
+            t.deepEqual(err, new Error(configUtils.getQueryUsesInvalid(undefined, "foo/bar@v1@v3")));
+        }
+    });
+});
 ava_1.default("API client used when reading remote config", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        CodeQL.setCodeQL({
-            resolveQueries: async function () {
+        const codeQL = codeql_1.setCodeQL({
+            async resolveQueries() {
                 return {
                     byLanguage: {
-                        'javascript': {
-                            'foo.ql': {},
+                        javascript: {
+                            "foo.ql": {},
                         },
                     },
                     noDeclaredLanguage: {},
@@ -272,24 +476,21 @@ ava_1.default("API client used when reading remote config", async (t) => {
         };
         const spyGetContents = mockGetContents(dummyResponse);
         // Create checkout directory for remote queries repository
-        fs.mkdirSync(path.join(tmpDir, 'foo/bar'), { recursive: true });
-        setInput('config-file', 'octo-org/codeql-config/config.yaml@main');
-        setInput('languages', 'javascript');
-        await configUtils.initConfig();
+        fs.mkdirSync(path.join(tmpDir, "foo/bar/dev"), { recursive: true });
+        const configFile = "octo-org/codeql-config/config.yaml@main";
+        const languages = "javascript";
+        await configUtils.initConfig(languages, undefined, configFile, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
         t.assert(spyGetContents.called);
     });
 });
 ava_1.default("Remote config handles the case where a directory is provided", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
         const dummyResponse = []; // directories are returned as arrays
         mockGetContents(dummyResponse);
-        const repoReference = 'octo-org/codeql-config/config.yaml@main';
-        setInput('config-file', repoReference);
+        const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(undefined, undefined, repoReference, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
             t.deepEqual(err, new Error(configUtils.getConfigFileDirectoryGivenMessage(repoReference)));
@@ -298,17 +499,14 @@ ava_1.default("Remote config handles the case where a directory is provided", as
 });
 ava_1.default("Invalid format of remote config handled correctly", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
         const dummyResponse = {
         // note no "content" property here
         };
         mockGetContents(dummyResponse);
-        const repoReference = 'octo-org/codeql-config/config.yaml@main';
-        setInput('config-file', repoReference);
+        const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(undefined, undefined, repoReference, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
             t.deepEqual(err, new Error(configUtils.getConfigFileFormatInvalidMessage(repoReference)));
@@ -317,12 +515,10 @@ ava_1.default("Invalid format of remote config handled correctly", async (t) =>
 });
 ava_1.default("No detected languages", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
         mockListLanguages([]);
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(undefined, undefined, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
             t.deepEqual(err, new Error(configUtils.getNoLanguagesError()));
@@ -331,25 +527,21 @@ ava_1.default("No detected languages", async (t) => {
 });
 ava_1.default("Unknown languages", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        process.env['RUNNER_TEMP'] = tmpDir;
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        setInput('languages', 'ruby,english');
+        const languages = "ruby,english";
         try {
-            await configUtils.initConfig();
-            throw new Error('initConfig did not throw error');
+            await configUtils.initConfig(languages, undefined, undefined, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+            throw new Error("initConfig did not throw error");
         }
         catch (err) {
-            t.deepEqual(err, new Error(configUtils.getUnknownLanguagesError(['ruby', 'english'])));
+            t.deepEqual(err, new Error(configUtils.getUnknownLanguagesError(["ruby", "english"])));
         }
     });
 });
 function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGenerator) {
-    ava_1.default("load invalid input - " + testName, async (t) => {
+    ava_1.default(`load invalid input - ${testName}`, async (t) => {
         return await util.withTmpDir(async (tmpDir) => {
-            process.env['RUNNER_TEMP'] = tmpDir;
-            process.env['GITHUB_WORKSPACE'] = tmpDir;
-            CodeQL.setCodeQL({
-                resolveQueries: async function () {
+            const codeQL = codeql_1.setCodeQL({
+                async resolveQueries() {
                     return {
                         byLanguage: {},
                         noDeclaredLanguage: {},
@@ -357,13 +549,13 @@ function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGen
                     };
                 },
             });
-            const inputFile = path.join(tmpDir, 'input');
-            fs.writeFileSync(inputFile, inputFileContents, 'utf8');
-            setInput('config-file', 'input');
-            setInput('languages', 'javascript');
+            const languages = "javascript";
+            const configFile = "input";
+            const inputFile = path.join(tmpDir, configFile);
+            fs.writeFileSync(inputFile, inputFileContents, "utf8");
             try {
-                await configUtils.initConfig();
-                throw new Error('initConfig did not throw error');
+                await configUtils.initConfig(languages, undefined, configFile, { owner: "github", repo: "example " }, tmpDir, tmpDir, codeQL, tmpDir, sampleApiDetails, "runner", logging_1.getRunnerLogger(true));
+                throw new Error("initConfig did not throw error");
             }
             catch (err) {
                 t.deepEqual(err, new Error(expectedErrorMessageGenerator(inputFile)));
@@ -371,14 +563,14 @@ function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGen
         });
     });
 }
-doInvalidInputTest('name invalid type', `
+doInvalidInputTest("name invalid type", `
   name:
     - foo: bar`, configUtils.getNameInvalid);
-doInvalidInputTest('disable-default-queries invalid type', `disable-default-queries: 42`, configUtils.getDisableDefaultQueriesInvalid);
-doInvalidInputTest('queries invalid type', `queries: foo`, configUtils.getQueriesInvalid);
-doInvalidInputTest('paths-ignore invalid type', `paths-ignore: bar`, configUtils.getPathsIgnoreInvalid);
-doInvalidInputTest('paths invalid type', `paths: 17`, configUtils.getPathsInvalid);
-doInvalidInputTest('queries uses invalid type', `
+doInvalidInputTest("disable-default-queries invalid type", `disable-default-queries: 42`, configUtils.getDisableDefaultQueriesInvalid);
+doInvalidInputTest("queries invalid type", `queries: foo`, configUtils.getQueriesInvalid);
+doInvalidInputTest("paths-ignore invalid type", `paths-ignore: bar`, configUtils.getPathsIgnoreInvalid);
+doInvalidInputTest("paths invalid type", `paths: 17`, configUtils.getPathsInvalid);
+doInvalidInputTest("queries uses invalid type", `
   queries:
   - uses:
       - hello: world`, configUtils.getQueryUsesInvalid);
@@ -389,52 +581,47 @@ function doInvalidQueryUsesTest(input, expectedErrorMessageGenerator) {
     name: my config
     queries:
       - name: foo
-        uses: ` + input;
-    doInvalidInputTest("queries uses \"" + input + "\"", inputFileContents, expectedErrorMessageGenerator);
+        uses: ${input}`;
+    doInvalidInputTest(`queries uses "${input}"`, inputFileContents, expectedErrorMessageGenerator);
 }
 // Various "uses" fields, and the errors they should produce
-doInvalidQueryUsesTest("''", c => configUtils.getQueryUsesInvalid(c, undefined));
-doInvalidQueryUsesTest("foo/bar", c => configUtils.getQueryUsesInvalid(c, "foo/bar"));
-doInvalidQueryUsesTest("foo/bar@v1@v2", c => configUtils.getQueryUsesInvalid(c, "foo/bar@v1@v2"));
-doInvalidQueryUsesTest("foo@master", c => configUtils.getQueryUsesInvalid(c, "foo@master"));
-doInvalidQueryUsesTest("https://github.com/foo/bar@master", c => configUtils.getQueryUsesInvalid(c, "https://github.com/foo/bar@master"));
-doInvalidQueryUsesTest("./foo", c => configUtils.getLocalPathDoesNotExist(c, "foo"));
-doInvalidQueryUsesTest("./..", c => configUtils.getLocalPathOutsideOfRepository(c, ".."));
+doInvalidQueryUsesTest("''", (c) => configUtils.getQueryUsesInvalid(c, undefined));
+doInvalidQueryUsesTest("foo/bar", (c) => configUtils.getQueryUsesInvalid(c, "foo/bar"));
+doInvalidQueryUsesTest("foo/bar@v1@v2", (c) => configUtils.getQueryUsesInvalid(c, "foo/bar@v1@v2"));
+doInvalidQueryUsesTest("foo@master", (c) => configUtils.getQueryUsesInvalid(c, "foo@master"));
+doInvalidQueryUsesTest("https://github.com/foo/bar@master", (c) => configUtils.getQueryUsesInvalid(c, "https://github.com/foo/bar@master"));
+doInvalidQueryUsesTest("./foo", (c) => configUtils.getLocalPathDoesNotExist(c, "foo"));
+doInvalidQueryUsesTest("./..", (c) => configUtils.getLocalPathOutsideOfRepository(c, ".."));
 const validPaths = [
-    'foo',
-    'foo/',
-    'foo/**',
-    'foo/**/',
-    'foo/**/**',
-    'foo/**/bar/**/baz',
-    '**/',
-    '**/foo',
-    '/foo',
+    "foo",
+    "foo/",
+    "foo/**",
+    "foo/**/",
+    "foo/**/**",
+    "foo/**/bar/**/baz",
+    "**/",
+    "**/foo",
+    "/foo",
 ];
-const invalidPaths = [
-    'a/***/b',
-    'a/**b',
-    'a/b**',
-    '**',
-];
-ava_1.default('path validations', t => {
+const invalidPaths = ["a/***/b", "a/**b", "a/b**", "**"];
+ava_1.default("path validations", (t) => {
     // Dummy values to pass to validateAndSanitisePath
-    const propertyName = 'paths';
-    const configFile = './.github/codeql/config.yml';
-    for (const path of validPaths) {
-        t.truthy(configUtils.validateAndSanitisePath(path, propertyName, configFile));
+    const propertyName = "paths";
+    const configFile = "./.github/codeql/config.yml";
+    for (const validPath of validPaths) {
+        t.truthy(configUtils.validateAndSanitisePath(validPath, propertyName, configFile, logging_1.getRunnerLogger(true)));
     }
-    for (const path of invalidPaths) {
-        t.throws(() => configUtils.validateAndSanitisePath(path, propertyName, configFile));
+    for (const invalidPath of invalidPaths) {
+        t.throws(() => configUtils.validateAndSanitisePath(invalidPath, propertyName, configFile, logging_1.getRunnerLogger(true)));
     }
 });
-ava_1.default('path sanitisation', t => {
+ava_1.default("path sanitisation", (t) => {
     // Dummy values to pass to validateAndSanitisePath
-    const propertyName = 'paths';
-    const configFile = './.github/codeql/config.yml';
+    const propertyName = "paths";
+    const configFile = "./.github/codeql/config.yml";
     // Valid paths are not modified
-    t.deepEqual(configUtils.validateAndSanitisePath('foo/bar', propertyName, configFile), 'foo/bar');
+    t.deepEqual(configUtils.validateAndSanitisePath("foo/bar", propertyName, configFile, logging_1.getRunnerLogger(true)), "foo/bar");
     // Trailing stars are stripped
-    t.deepEqual(configUtils.validateAndSanitisePath('foo/**', propertyName, configFile), 'foo/');
+    t.deepEqual(configUtils.validateAndSanitisePath("foo/**", propertyName, configFile, logging_1.getRunnerLogger(true)), "foo/");
 });
 //# sourceMappingURL=config-utils.test.js.map

lib/defaults.json

@@ -1,3 +1,3 @@
 {
-    "bundleVersion": "codeql-bundle-20200630"
+    "bundleVersion": "codeql-bundle-20201106"
 }

lib/error-matcher.js

@@ -0,0 +1,17 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+// exported only for testing purposes
+exports.namedMatchersForTesting = {
+    /*
+    In due course it may be possible to remove the regex, if/when javascript also exits with code 32.
+    */
+    noSourceCodeFound: {
+        exitCode: 32,
+        outputRegex: new RegExp("No JavaScript or TypeScript code found\\."),
+        message: "No code found during the build. Please see:\n" +
+            "https://docs.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/troubleshooting-code-scanning#no-code-found-during-the-build",
+    },
+};
+// we collapse the matches into an array for use in execErrorCatcher
+exports.errorMatchers = Object.values(exports.namedMatchersForTesting);
+//# sourceMappingURL=error-matcher.js.map

lib/error-matcher.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"error-matcher.js","sourceRoot":"","sources":["../src/error-matcher.ts"],"names":[],"mappings":";;AAQA,qCAAqC;AACxB,QAAA,uBAAuB,GAAoC;IACtE;;MAEE;IACF,iBAAiB,EAAE;QACjB,QAAQ,EAAE,EAAE;QACZ,WAAW,EAAE,IAAI,MAAM,CAAC,2CAA2C,CAAC;QACpE,OAAO,EACL,+CAA+C;YAC/C,yJAAyJ;KAC5J;CACF,CAAC;AAEF,oEAAoE;AACvD,QAAA,aAAa,GAAG,MAAM,CAAC,MAAM,CAAC,+BAAuB,CAAC,CAAC"}

lib/error-matcher.test.js

@@ -0,0 +1,29 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const error_matcher_1 = require("./error-matcher");
+/*
+NB We test the regexes for all the matchers against example log output snippets.
+*/
+ava_1.default("noSourceCodeFound matches against example javascript output", async (t) => {
+    t.assert(testErrorMatcher("noSourceCodeFound", `
+  2020-09-07T17:39:53.9050522Z [2020-09-07 17:39:53] [build] Done extracting /opt/hostedtoolcache/CodeQL/0.0.0-20200630/x64/codeql/javascript/tools/data/externs/web/ie_vml.js (3 ms)
+  2020-09-07T17:39:53.9051849Z [2020-09-07 17:39:53] [build-err] No JavaScript or TypeScript code found.
+  2020-09-07T17:39:53.9052444Z [2020-09-07 17:39:53] [build-err] No JavaScript or TypeScript code found.
+  2020-09-07T17:39:53.9251124Z [2020-09-07 17:39:53] [ERROR] Spawned process exited abnormally (code 255; tried to run: [/opt/hostedtoolcache/CodeQL/0.0.0-20200630/x64/codeql/javascript/tools/autobuild.sh])
+  `));
+});
+function testErrorMatcher(matcherName, logSample) {
+    if (!(matcherName in error_matcher_1.namedMatchersForTesting)) {
+        throw new Error(`Unknown matcher ${matcherName}`);
+    }
+    const regex = error_matcher_1.namedMatchersForTesting[matcherName].outputRegex;
+    if (regex === undefined) {
+        throw new Error(`Cannot test matcher ${matcherName} with null regex`);
+    }
+    return regex.test(logSample);
+}
+//# sourceMappingURL=error-matcher.test.js.map

lib/error-matcher.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"error-matcher.test.js","sourceRoot":"","sources":["../src/error-matcher.test.ts"],"names":[],"mappings":";;;;;AAAA,8CAAuB;AAEvB,mDAA0D;AAE1D;;EAEE;AAEF,aAAI,CAAC,6DAA6D,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC9E,CAAC,CAAC,MAAM,CACN,gBAAgB,CACd,mBAAmB,EACnB;;;;;GAKH,CACE,CACF,CAAC;AACJ,CAAC,CAAC,CAAC;AAEH,SAAS,gBAAgB,CAAC,WAAmB,EAAE,SAAiB;IAC9D,IAAI,CAAC,CAAC,WAAW,IAAI,uCAAuB,CAAC,EAAE;QAC7C,MAAM,IAAI,KAAK,CAAC,mBAAmB,WAAW,EAAE,CAAC,CAAC;KACnD;IACD,MAAM,KAAK,GAAG,uCAAuB,CAAC,WAAW,CAAC,CAAC,WAAW,CAAC;IAC/D,IAAI,KAAK,KAAK,SAAS,EAAE;QACvB,MAAM,IAAI,KAAK,CAAC,uBAAuB,WAAW,kBAAkB,CAAC,CAAC;KACvE;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;AAC/B,CAAC"}

lib/external-queries.js

@@ -7,26 +7,33 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const exec = __importStar(require("@actions/exec"));
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
-const util = __importStar(require("./util"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const safeWhich = __importStar(require("@chrisgavin/safe-which"));
 /**
  * Check out repository at the given ref, and return the directory of the checkout.
  */
-async function checkoutExternalRepository(repository, ref) {
-    const folder = util.getRequiredEnvParam('RUNNER_TEMP');
-    core.info('Checking out ' + repository);
-    const checkoutLocation = path.join(folder, repository);
+async function checkoutExternalRepository(repository, ref, githubUrl, tempDir, logger) {
+    logger.info(`Checking out ${repository}`);
+    const checkoutLocation = path.join(tempDir, repository, ref);
+    if (!checkoutLocation.startsWith(tempDir)) {
+        // this still permits locations that mess with sibling repositories in `tempDir`, but that is acceptable
+        throw new Error(`'${repository}@${ref}' is not a valid repository and reference.`);
+    }
     if (!fs.existsSync(checkoutLocation)) {
-        const repoURL = 'https://github.com/' + repository + '.git';
-        await exec.exec('git', ['clone', repoURL, checkoutLocation]);
-        await exec.exec('git', [
-            '--work-tree=' + checkoutLocation,
-            '--git-dir=' + checkoutLocation + '/.git',
-            'checkout', ref,
-        ]);
+        const repoURL = `${githubUrl}/${repository}`;
+        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), [
+            "clone",
+            repoURL,
+            checkoutLocation,
+        ]).exec();
+        await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), [
+            `--work-tree=${checkoutLocation}`,
+            `--git-dir=${checkoutLocation}/.git`,
+            "checkout",
+            ref,
+        ]).exec();
     }
     return checkoutLocation;
 }

lib/external-queries.js.map

@@ -1 +1 @@
-{"version":3,"file":"external-queries.js","sourceRoot":"","sources":["../src/external-queries.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AACtC,oDAAsC;AACtC,uCAAyB;AACzB,2CAA6B;AAE7B,6CAA+B;AAE/B;;GAEG;AACI,KAAK,UAAU,0BAA0B,CAAC,UAAkB,EAAE,GAAW;IAC9E,MAAM,MAAM,GAAG,IAAI,CAAC,mBAAmB,CAAC,aAAa,CAAC,CAAC;IAEvD,IAAI,CAAC,IAAI,CAAC,eAAe,GAAG,UAAU,CAAC,CAAC;IAExC,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;IACvD,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE;QACpC,MAAM,OAAO,GAAG,qBAAqB,GAAG,UAAU,GAAG,MAAM,CAAC;QAC5D,MAAM,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,OAAO,EAAE,gBAAgB,CAAC,CAAC,CAAC;QAC7D,MAAM,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE;YACrB,cAAc,GAAG,gBAAgB;YACjC,YAAY,GAAG,gBAAgB,GAAG,OAAO;YACzC,UAAU,EAAE,GAAG;SAChB,CAAC,CAAC;KACJ;IAED,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAjBD,gEAiBC"}
+{"version":3,"file":"external-queries.js","sourceRoot":"","sources":["../src/external-queries.ts"],"names":[],"mappings":";;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,yEAA2D;AAC3D,kEAAoD;AAIpD;;GAEG;AACI,KAAK,UAAU,0BAA0B,CAC9C,UAAkB,EAClB,GAAW,EACX,SAAiB,EACjB,OAAe,EACf,MAAc;IAEd,MAAM,CAAC,IAAI,CAAC,gBAAgB,UAAU,EAAE,CAAC,CAAC;IAE1C,MAAM,gBAAgB,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,UAAU,EAAE,GAAG,CAAC,CAAC;IAE7D,IAAI,CAAC,gBAAgB,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE;QACzC,wGAAwG;QACxG,MAAM,IAAI,KAAK,CACb,IAAI,UAAU,IAAI,GAAG,4CAA4C,CAClE,CAAC;KACH;IAED,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE;QACpC,MAAM,OAAO,GAAG,GAAG,SAAS,IAAI,UAAU,EAAE,CAAC;QAC7C,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE;YAChE,OAAO;YACP,OAAO;YACP,gBAAgB;SACjB,CAAC,CAAC,IAAI,EAAE,CAAC;QACV,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,EAAE;YAChE,eAAe,gBAAgB,EAAE;YACjC,aAAa,gBAAgB,OAAO;YACpC,UAAU;YACV,GAAG;SACJ,CAAC,CAAC,IAAI,EAAE,CAAC;KACX;IAED,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAlCD,gEAkCC"}

lib/external-queries.test.js

@@ -1,7 +1,4 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 var __importStar = (this && this.__importStar) || function (mod) {
     if (mod && mod.__esModule) return mod;
     var result = {};
@@ -9,20 +6,92 @@ var __importStar = (this && this.__importStar) || function (mod) {
     result["default"] = mod;
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
-const ava_1 = __importDefault(require("ava"));
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const safeWhich = __importStar(require("@chrisgavin/safe-which"));
+const ava_1 = __importDefault(require("ava"));
 const externalQueries = __importStar(require("./external-queries"));
+const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 const util = __importStar(require("./util"));
 testing_utils_1.setupTests(ava_1.default);
 ava_1.default("checkoutExternalQueries", async (t) => {
     await util.withTmpDir(async (tmpDir) => {
-        process.env["RUNNER_TEMP"] = tmpDir;
-        await externalQueries.checkoutExternalRepository("github/codeql-go", "df4c6869212341b601005567381944ed90906b6b");
-        // COPYRIGHT file existed in df4c6869212341b601005567381944ed90906b6b but not in the default branch
-        t.true(fs.existsSync(path.join(tmpDir, "github", "codeql-go", "COPYRIGHT")));
+        // Create a test repo in a subdir of the temp dir.
+        // It should have a default branch with two commits after the initial commit, where
+        // - the first commit contains files 'a' and 'b'
+        // - the second commit contains only 'a'
+        // Place the repo in a subdir because we're going to checkout a copy in tmpDir
+        const testRepoBaseDir = path.join(tmpDir, "test-repo-dir");
+        const repoName = "some/repo";
+        const repoPath = path.join(testRepoBaseDir, repoName);
+        const repoGitDir = path.join(repoPath, ".git");
+        // Run the given git command, and return the output.
+        // Passes --git-dir and --work-tree.
+        // Any stderr output is suppressed until the command fails.
+        const runGit = async function (command) {
+            let stdout = "";
+            let stderr = "";
+            command = [
+                `--git-dir=${repoGitDir}`,
+                `--work-tree=${repoPath}`,
+                ...command,
+            ];
+            console.log(`Running: git ${command.join(" ")}`);
+            try {
+                await new toolrunner.ToolRunner(await safeWhich.safeWhich("git"), command, {
+                    silent: true,
+                    listeners: {
+                        stdout: (data) => {
+                            stdout += data.toString();
+                        },
+                        stderr: (data) => {
+                            stderr += data.toString();
+                        },
+                    },
+                }).exec();
+            }
+            catch (e) {
+                console.log(`Command failed: git ${command.join(" ")}`);
+                process.stderr.write(stderr);
+                throw e;
+            }
+            return stdout.trim();
+        };
+        fs.mkdirSync(repoPath, { recursive: true });
+        await runGit(["init", repoPath]);
+        await runGit(["config", "user.email", "test@github.com"]);
+        await runGit(["config", "user.name", "Test Test"]);
+        await runGit(["config", "commit.gpgsign", "false"]);
+        fs.writeFileSync(path.join(repoPath, "a"), "a content");
+        await runGit(["add", "a"]);
+        await runGit(["commit", "-m", "commit1"]);
+        fs.writeFileSync(path.join(repoPath, "b"), "b content");
+        await runGit(["add", "b"]);
+        await runGit(["commit", "-m", "commit1"]);
+        const commit1Sha = await runGit(["rev-parse", "HEAD"]);
+        fs.unlinkSync(path.join(repoPath, "b"));
+        await runGit(["add", "b"]);
+        await runGit(["commit", "-m", "commit2"]);
+        const commit2Sha = await runGit(["rev-parse", "HEAD"]);
+        // Checkout the first commit, which should contain 'a' and 'b'
+        t.false(fs.existsSync(path.join(tmpDir, repoName)));
+        await externalQueries.checkoutExternalRepository(repoName, commit1Sha, `file://${testRepoBaseDir}`, tmpDir, logging_1.getRunnerLogger(true));
+        t.true(fs.existsSync(path.join(tmpDir, repoName)));
+        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha)));
+        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha, "a")));
+        t.true(fs.existsSync(path.join(tmpDir, repoName, commit1Sha, "b")));
+        // Checkout the second commit as well, which should only contain 'a'
+        t.false(fs.existsSync(path.join(tmpDir, repoName, commit2Sha)));
+        await externalQueries.checkoutExternalRepository(repoName, commit2Sha, `file://${testRepoBaseDir}`, tmpDir, logging_1.getRunnerLogger(true));
+        t.true(fs.existsSync(path.join(tmpDir, repoName, commit2Sha)));
+        t.true(fs.existsSync(path.join(tmpDir, repoName, commit2Sha, "a")));
+        t.false(fs.existsSync(path.join(tmpDir, repoName, commit2Sha, "b")));
     });
 });
 //# sourceMappingURL=external-queries.test.js.map

lib/external-queries.test.js.map

@@ -1 +1 @@
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lib/finalize-db.js

@@ -1,115 +0,0 @@
-"use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-const codeql_1 = require("./codeql");
-const configUtils = __importStar(require("./config-utils"));
-const logging_1 = require("./logging");
-const repository_1 = require("./repository");
-const sharedEnv = __importStar(require("./shared-environment"));
-const upload_lib = __importStar(require("./upload-lib"));
-const util = __importStar(require("./util"));
-async function sendStatusReport(startedAt, queriesStats, uploadStats, error) {
-    var _a, _b, _c;
-    const status = ((_a = queriesStats) === null || _a === void 0 ? void 0 : _a.analyze_failure_language) !== undefined || error !== undefined ? 'failure' : 'success';
-    const statusReportBase = await util.createStatusReportBase('finish', status, startedAt, (_b = error) === null || _b === void 0 ? void 0 : _b.message, (_c = error) === null || _c === void 0 ? void 0 : _c.stack);
-    const statusReport = {
-        ...statusReportBase,
-        ...(queriesStats || {}),
-        ...(uploadStats || {}),
-    };
-    await util.sendStatusReport(statusReport);
-}
-async function createdDBForScannedLanguages(databaseFolder, config) {
-    const codeql = codeql_1.getCodeQL();
-    for (const language of config.languages) {
-        if (codeql_1.isScannedLanguage(language)) {
-            core.startGroup('Extracting ' + language);
-            await codeql.extractScannedLanguage(path.join(databaseFolder, language), language);
-            core.endGroup();
-        }
-    }
-}
-async function finalizeDatabaseCreation(databaseFolder, config) {
-    await createdDBForScannedLanguages(databaseFolder, config);
-    const codeql = codeql_1.getCodeQL();
-    for (const language of config.languages) {
-        core.startGroup('Finalizing ' + language);
-        await codeql.finalizeDatabase(path.join(databaseFolder, language));
-        core.endGroup();
-    }
-}
-// Runs queries and creates sarif files in the given folder
-async function runQueries(databaseFolder, sarifFolder, config) {
-    const codeql = codeql_1.getCodeQL();
-    for (let language of fs.readdirSync(databaseFolder)) {
-        core.startGroup('Analyzing ' + language);
-        const queries = config.queries[language] || [];
-        if (queries.length === 0) {
-            throw new Error('Unable to analyse ' + language + ' as no queries were selected for this language');
-        }
-        try {
-            // Pass the queries to codeql using a file instead of using the command
-            // line to avoid command line length restrictions, particularly on windows.
-            const querySuite = path.join(databaseFolder, language + '-queries.qls');
-            const querySuiteContents = queries.map(q => '- query: ' + q).join('\n');
-            fs.writeFileSync(querySuite, querySuiteContents);
-            core.debug('Query suite file for ' + language + '...\n' + querySuiteContents);
-            const sarifFile = path.join(sarifFolder, language + '.sarif');
-            await codeql.databaseAnalyze(path.join(databaseFolder, language), sarifFile, querySuite);
-            core.debug('SARIF results for database ' + language + ' created at "' + sarifFile + '"');
-            core.endGroup();
-        }
-        catch (e) {
-            // For now the fields about query performance are not populated
-            return {
-                analyze_failure_language: language,
-            };
-        }
-    }
-    return {};
-}
-async function run() {
-    const startedAt = new Date();
-    let queriesStats = undefined;
-    let uploadStats = undefined;
-    try {
-        util.prepareLocalRunEnvironment();
-        if (!await util.sendStatusReport(await util.createStatusReportBase('finish', 'starting', startedAt), true)) {
-            return;
-        }
-        const config = await configUtils.getConfig();
-        core.exportVariable(sharedEnv.ODASA_TRACER_CONFIGURATION, '');
-        delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
-        const databaseFolder = util.getCodeQLDatabasesDir();
-        const sarifFolder = core.getInput('output');
-        fs.mkdirSync(sarifFolder, { recursive: true });
-        core.info('Finalizing database creation');
-        await finalizeDatabaseCreation(databaseFolder, config);
-        core.info('Analyzing database');
-        queriesStats = await runQueries(databaseFolder, sarifFolder, config);
-        if ('true' === core.getInput('upload')) {
-            uploadStats = await upload_lib.upload(sarifFolder, repository_1.parseRepositoryNwo(util.getRequiredEnvParam('GITHUB_REPOSITORY')), await util.getCommitOid(), util.getRef(), await util.getAnalysisKey(), util.getRequiredEnvParam('GITHUB_WORKFLOW'), util.getWorkflowRunID(), core.getInput('checkout_path'), core.getInput('matrix'), core.getInput('token'), util.getRequiredEnvParam('GITHUB_API_URL'), 'actions', logging_1.getActionsLogger());
-        }
-    }
-    catch (error) {
-        core.setFailed(error.message);
-        console.log(error);
-        await sendStatusReport(startedAt, queriesStats, uploadStats, error);
-        return;
-    }
-    await sendStatusReport(startedAt, queriesStats, uploadStats);
-}
-run().catch(e => {
-    core.setFailed("analyze action failed: " + e);
-    console.log(e);
-});
-//# sourceMappingURL=finalize-db.js.map

lib/finalize-db.js.map

@@ -1 +0,0 @@
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lib/finalize-db.test.js

@@ -1,2 +0,0 @@
-"use strict";
-//# sourceMappingURL=finalize-db.test.js.map

lib/finalize-db.test.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"finalize-db.test.js","sourceRoot":"","sources":["../src/finalize-db.test.ts"],"names":[],"mappings":""}

lib/fingerprints.js

@@ -10,13 +10,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
 const fs = __importStar(require("fs"));
 const long_1 = __importDefault(require("long"));
-const tab = '\t'.charCodeAt(0);
-const space = ' '.charCodeAt(0);
-const lf = '\n'.charCodeAt(0);
-const cr = '\r'.charCodeAt(0);
+const tab = "\t".charCodeAt(0);
+const space = " ".charCodeAt(0);
+const lf = "\n".charCodeAt(0);
+const cr = "\r".charCodeAt(0);
 const BLOCK_SIZE = 100;
 const MOD = long_1.default.fromInt(37); // L
 // Compute the starting point for the hash mod
@@ -47,8 +46,8 @@ function hash(callback, input) {
     // Indexes match up with those from the window variable.
     const lineNumbers = Array(BLOCK_SIZE).fill(-1);
     // The current hash value, updated as we read each character
-    let hash = long_1.default.ZERO;
-    let firstMod = computeFirstMod();
+    let hashRaw = long_1.default.ZERO;
+    const firstMod = computeFirstMod();
     // The current index in the window, will wrap around to zero when we reach BLOCK_SIZE
     let index = 0;
     // The line number of the character we are currently processing from the input
@@ -62,19 +61,19 @@ function hash(callback, input) {
     const hashCounts = {};
     // Output the current hash and line number to the callback function
     const outputHash = function () {
-        let hashValue = hash.toUnsigned().toString(16);
+        const hashValue = hashRaw.toUnsigned().toString(16);
         if (!hashCounts[hashValue]) {
             hashCounts[hashValue] = 0;
         }
         hashCounts[hashValue]++;
-        callback(lineNumbers[index], hashValue + ":" + hashCounts[hashValue]);
+        callback(lineNumbers[index], `${hashValue}:${hashCounts[hashValue]}`);
         lineNumbers[index] = -1;
     };
     // Update the current hash value and increment the index in the window
     const updateHash = function (current) {
         const begin = window[index];
         window[index] = current;
-        hash = MOD.multiply(hash)
+        hashRaw = MOD.multiply(hashRaw)
             .add(long_1.default.fromInt(current))
             .subtract(firstMod.multiply(long_1.default.fromInt(begin)));
         index = (index + 1) % BLOCK_SIZE;
@@ -121,8 +120,8 @@ function hash(callback, input) {
 }
 exports.hash = hash;
 // Generate a hash callback function that updates the given result in-place
-// when it recieves a hash for the correct line number. Ignores hashes for other lines.
-function locationUpdateCallback(result, location) {
+// when it receives a hash for the correct line number. Ignores hashes for other lines.
+function locationUpdateCallback(result, location, logger) {
     var _a, _b;
     let locationStartLine = (_b = (_a = location.physicalLocation) === null || _a === void 0 ? void 0 : _a.region) === null || _b === void 0 ? void 0 : _b.startLine;
     if (locationStartLine === undefined) {
@@ -131,7 +130,7 @@ function locationUpdateCallback(result, location) {
         // using the hash of the first line of the file.
         locationStartLine = 1;
     }
-    return function (lineNumber, hash) {
+    return function (lineNumber, hashValue) {
         // Ignore hashes for lines that don't concern us
         if (locationStartLine !== lineNumber) {
             return;
@@ -143,13 +142,10 @@ function locationUpdateCallback(result, location) {
         // If the hash doesn't match the existing fingerprint then
         // output a warning and don't overwrite it.
         if (!existingFingerprint) {
-            result.partialFingerprints.primaryLocationLineHash = hash;
+            result.partialFingerprints.primaryLocationLineHash = hashValue;
         }
-        else if (existingFingerprint !== hash) {
-            core.warning('Calculated fingerprint of ' + hash +
-                ' for file ' + location.physicalLocation.artifactLocation.uri +
-                ' line ' + lineNumber +
-                ', but found existing inconsistent fingerprint value ' + existingFingerprint);
+        else if (existingFingerprint !== hashValue) {
+            logger.warning(`Calculated fingerprint of ${hashValue} for file ${location.physicalLocation.artifactLocation.uri} line ${lineNumber}, but found existing inconsistent fingerprint value ${existingFingerprint}`);
         }
     };
 }
@@ -157,48 +153,48 @@ function locationUpdateCallback(result, location) {
 // the source file so we can hash it.
 // If possible returns a absolute file path for the source file,
 // or if not possible then returns undefined.
-function resolveUriToFile(location, artifacts) {
+function resolveUriToFile(location, artifacts, checkoutPath, logger) {
     // This may be referencing an artifact
     if (!location.uri && location.index !== undefined) {
-        if (typeof location.index !== 'number' ||
+        if (typeof location.index !== "number" ||
             location.index < 0 ||
             location.index >= artifacts.length ||
-            typeof artifacts[location.index].location !== 'object') {
-            core.debug(`Ignoring location as URI "${location.index}" is invalid`);
+            typeof artifacts[location.index].location !== "object") {
+            logger.debug(`Ignoring location as URI "${location.index}" is invalid`);
             return undefined;
         }
         location = artifacts[location.index].location;
     }
     // Get the URI and decode
-    if (typeof location.uri !== 'string') {
-        core.debug(`Ignoring location as index "${location.uri}" is invalid`);
+    if (typeof location.uri !== "string") {
+        logger.debug(`Ignoring location as index "${location.uri}" is invalid`);
         return undefined;
     }
     let uri = decodeURIComponent(location.uri);
     // Remove a file scheme, and abort if the scheme is anything else
-    const fileUriPrefix = 'file://';
+    const fileUriPrefix = "file://";
     if (uri.startsWith(fileUriPrefix)) {
         uri = uri.substring(fileUriPrefix.length);
     }
-    if (uri.indexOf('://') !== -1) {
-        core.debug(`Ignoring location URI "${uri}" as the scheme is not recognised`);
+    if (uri.indexOf("://") !== -1) {
+        logger.debug(`Ignoring location URI "${uri}" as the scheme is not recognised`);
         return undefined;
     }
     // Discard any absolute paths that aren't in the src root
-    const srcRootPrefix = process.env['GITHUB_WORKSPACE'] + '/';
-    if (uri.startsWith('/') && !uri.startsWith(srcRootPrefix)) {
-        core.debug(`Ignoring location URI "${uri}" as it is outside of the src root`);
+    const srcRootPrefix = `${checkoutPath}/`;
+    if (uri.startsWith("/") && !uri.startsWith(srcRootPrefix)) {
+        logger.debug(`Ignoring location URI "${uri}" as it is outside of the src root`);
         return undefined;
     }
     // Just assume a relative path is relative to the src root.
     // This is not necessarily true but should be a good approximation
     // and here we likely want to err on the side of handling more cases.
-    if (!uri.startsWith('/')) {
+    if (!uri.startsWith("/")) {
         uri = srcRootPrefix + uri;
     }
     // Check the file exists
     if (!fs.existsSync(uri)) {
-        core.debug(`Unable to compute fingerprint for non-existent file: ${uri}`);
+        logger.debug(`Unable to compute fingerprint for non-existent file: ${uri}`);
         return undefined;
     }
     return uri;
@@ -206,41 +202,43 @@ function resolveUriToFile(location, artifacts) {
 exports.resolveUriToFile = resolveUriToFile;
 // Compute fingerprints for results in the given sarif file
 // and return an updated sarif file contents.
-function addFingerprints(sarifContents) {
+function addFingerprints(sarifContents, checkoutPath, logger) {
     var _a, _b;
-    let sarif = JSON.parse(sarifContents);
+    const sarif = JSON.parse(sarifContents);
     // Gather together results for the same file and construct
     // callbacks to accept hashes for that file and update the location
     const callbacksByFile = {};
     for (const run of sarif.runs || []) {
         // We may need the list of artifacts to resolve against
-        let artifacts = run.artifacts || [];
+        const artifacts = run.artifacts || [];
         for (const result of run.results || []) {
             // Check the primary location is defined correctly and is in the src root
             const primaryLocation = (result.locations || [])[0];
             if (!((_b = (_a = primaryLocation) === null || _a === void 0 ? void 0 : _a.physicalLocation) === null || _b === void 0 ? void 0 : _b.artifactLocation)) {
-                core.debug(`Unable to compute fingerprint for invalid location: ${JSON.stringify(primaryLocation)}`);
+                logger.debug(`Unable to compute fingerprint for invalid location: ${JSON.stringify(primaryLocation)}`);
                 continue;
             }
-            const filepath = resolveUriToFile(primaryLocation.physicalLocation.artifactLocation, artifacts);
+            const filepath = resolveUriToFile(primaryLocation.physicalLocation.artifactLocation, artifacts, checkoutPath, logger);
             if (!filepath) {
                 continue;
             }
             if (!callbacksByFile[filepath]) {
                 callbacksByFile[filepath] = [];
             }
-            callbacksByFile[filepath].push(locationUpdateCallback(result, primaryLocation));
+            callbacksByFile[filepath].push(locationUpdateCallback(result, primaryLocation, logger));
         }
     }
     // Now hash each file that was found
-    Object.entries(callbacksByFile).forEach(([filepath, callbacks]) => {
+    for (const [filepath, callbacks] of Object.entries(callbacksByFile)) {
         // A callback that forwards the hash to all other callbacks for that file
-        const teeCallback = function (lineNumber, hash) {
-            Object.values(callbacks).forEach(c => c(lineNumber, hash));
+        const teeCallback = function (lineNumber, hashValue) {
+            for (const c of Object.values(callbacks)) {
+                c(lineNumber, hashValue);
+            }
         };
         const fileContents = fs.readFileSync(filepath).toString();
         hash(teeCallback, fileContents);
-    });
+    }
     return JSON.stringify(sarif);
 }
 exports.addFingerprints = addFingerprints;

lib/fingerprints.test.js

@@ -1,7 +1,4 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 var __importStar = (this && this.__importStar) || function (mod) {
     if (mod && mod.__esModule) return mod;
     var result = {};
@@ -9,16 +6,20 @@ var __importStar = (this && this.__importStar) || function (mod) {
     result["default"] = mod;
     return result;
 };
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
-const ava_1 = __importDefault(require("ava"));
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+const ava_1 = __importDefault(require("ava"));
 const fingerprints = __importStar(require("./fingerprints"));
+const logging_1 = require("./logging");
 const testing_utils_1 = require("./testing-utils");
 testing_utils_1.setupTests(ava_1.default);
 function testHash(t, input, expectedHashes) {
     let index = 0;
-    let callback = function (lineNumber, hash) {
+    const callback = function (lineNumber, hash) {
         t.is(lineNumber, index + 1);
         t.is(hash, expectedHashes[index]);
         index++;
@@ -26,7 +27,7 @@ function testHash(t, input, expectedHashes) {
     fingerprints.hash(callback, input);
     t.is(index, input.split(/\r\n|\r|\n/).length);
 }
-ava_1.default('hash', (t) => {
+ava_1.default("hash", (t) => {
     // Try empty file
     testHash(t, "", ["c129715d7a2bc9a3:1"]);
     // Try various combinations of newline characters
@@ -34,7 +35,7 @@ ava_1.default('hash', (t) => {
         "271789c17abda88f:1",
         "54703d4cd895b18:1",
         "180aee12dab6264:1",
-        "a23a3dc5e078b07b:1"
+        "a23a3dc5e078b07b:1",
     ]);
     testHash(t, " hello; \t\nworld!!!\n\n\n  \t\tGreetings\n End", [
         "8b7cf3e952e7aeb2:1",
@@ -92,68 +93,87 @@ ava_1.default('hash', (t) => {
         "a9cf91f7bbf1862b:1",
         "55ec222b86bcae53:1",
         "cc97dc7b1d7d8f7b:1",
-        "c129715d7a2bc9a3:1"
+        "c129715d7a2bc9a3:1",
+    ]);
+    testHash(t, "x = 2\nx = 1\nprint(x)\nx = 3\nprint(x)\nx = 4\nprint(x)\n", [
+        "e54938cc54b302f1:1",
+        "bb609acbe9138d60:1",
+        "1131fd5871777f34:1",
+        "5c482a0f8b35ea28:1",
+        "54517377da7028d2:1",
+        "2c644846cb18d53e:1",
+        "f1b89f20de0d133:1",
+        "c129715d7a2bc9a3:1",
     ]);
 });
 function testResolveUriToFile(uri, index, artifactsURIs) {
-    const location = { "uri": uri, "index": index };
-    const artifacts = artifactsURIs.map(uri => ({ "location": { "uri": uri } }));
-    return fingerprints.resolveUriToFile(location, artifacts);
+    const location = { uri, index };
+    const artifacts = artifactsURIs.map((artifactURI) => ({
+        location: { uri: artifactURI },
+    }));
+    return fingerprints.resolveUriToFile(location, artifacts, process.cwd(), logging_1.getRunnerLogger(true));
 }
-ava_1.default('resolveUriToFile', t => {
+ava_1.default("resolveUriToFile", (t) => {
     // The resolveUriToFile method checks that the file exists and is in the right directory
     // so we need to give it real files to look at. We will use this file as an example.
     // For this to work we require the current working directory to be a parent, but this
     // should generally always be the case so this is fine.
     const cwd = process.cwd();
     const filepath = __filename;
-    t.true(filepath.startsWith(cwd + '/'));
-    const relativeFilepaht = filepath.substring(cwd.length + 1);
-    process.env['GITHUB_WORKSPACE'] = cwd;
+    t.true(filepath.startsWith(`${cwd}/`));
+    const relativeFilepath = filepath.substring(cwd.length + 1);
     // Absolute paths are unmodified
     t.is(testResolveUriToFile(filepath, undefined, []), filepath);
-    t.is(testResolveUriToFile('file://' + filepath, undefined, []), filepath);
+    t.is(testResolveUriToFile(`file://${filepath}`, undefined, []), filepath);
     // Relative paths are made absolute
-    t.is(testResolveUriToFile(relativeFilepaht, undefined, []), filepath);
-    t.is(testResolveUriToFile('file://' + relativeFilepaht, undefined, []), filepath);
+    t.is(testResolveUriToFile(relativeFilepath, undefined, []), filepath);
+    t.is(testResolveUriToFile(`file://${relativeFilepath}`, undefined, []), filepath);
     // Absolute paths outside the src root are discarded
-    t.is(testResolveUriToFile('/src/foo/bar.js', undefined, []), undefined);
-    t.is(testResolveUriToFile('file:///src/foo/bar.js', undefined, []), undefined);
+    t.is(testResolveUriToFile("/src/foo/bar.js", undefined, []), undefined);
+    t.is(testResolveUriToFile("file:///src/foo/bar.js", undefined, []), undefined);
     // Other schemes are discarded
-    t.is(testResolveUriToFile('https://' + filepath, undefined, []), undefined);
-    t.is(testResolveUriToFile('ftp://' + filepath, undefined, []), undefined);
+    t.is(testResolveUriToFile(`https://${filepath}`, undefined, []), undefined);
+    t.is(testResolveUriToFile(`ftp://${filepath}`, undefined, []), undefined);
     // Invalid URIs are discarded
     t.is(testResolveUriToFile(1, undefined, []), undefined);
     t.is(testResolveUriToFile(undefined, undefined, []), undefined);
-    // Non-existant files are discarded
-    t.is(testResolveUriToFile(filepath + '2', undefined, []), undefined);
+    // Non-existent files are discarded
+    t.is(testResolveUriToFile(`${filepath}2`, undefined, []), undefined);
     // Index is resolved
     t.is(testResolveUriToFile(undefined, 0, [filepath]), filepath);
-    t.is(testResolveUriToFile(undefined, 1, ['foo', filepath]), filepath);
+    t.is(testResolveUriToFile(undefined, 1, ["foo", filepath]), filepath);
     // Invalid indexes are discarded
     t.is(testResolveUriToFile(undefined, 1, [filepath]), undefined);
-    t.is(testResolveUriToFile(undefined, '0', [filepath]), undefined);
+    t.is(testResolveUriToFile(undefined, "0", [filepath]), undefined);
 });
-ava_1.default('addFingerprints', t => {
+ava_1.default("addFingerprints", (t) => {
     // Run an end-to-end test on a test file
-    let input = fs.readFileSync(__dirname + '/../src/testdata/fingerprinting.input.sarif').toString();
-    let expected = fs.readFileSync(__dirname + '/../src/testdata/fingerprinting.expected.sarif').toString();
+    let input = fs
+        .readFileSync(`${__dirname}/../src/testdata/fingerprinting.input.sarif`)
+        .toString();
+    let expected = fs
+        .readFileSync(`${__dirname}/../src/testdata/fingerprinting.expected.sarif`)
+        .toString();
     // The test files are stored prettified, but addFingerprints outputs condensed JSON
     input = JSON.stringify(JSON.parse(input));
     expected = JSON.stringify(JSON.parse(expected));
     // The URIs in the SARIF files resolve to files in the testdata directory
-    process.env['GITHUB_WORKSPACE'] = path.normalize(__dirname + '/../src/testdata');
-    t.deepEqual(fingerprints.addFingerprints(input), expected);
+    const checkoutPath = path.normalize(`${__dirname}/../src/testdata`);
+    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger(true)), expected);
 });
-ava_1.default('missingRegions', t => {
+ava_1.default("missingRegions", (t) => {
     // Run an end-to-end test on a test file
-    let input = fs.readFileSync(__dirname + '/../src/testdata/fingerprinting2.input.sarif').toString();
-    let expected = fs.readFileSync(__dirname + '/../src/testdata/fingerprinting2.expected.sarif').toString();
+    let input = fs
+        .readFileSync(`${__dirname}/../src/testdata/fingerprinting2.input.sarif`)
+        .toString();
+    let expected = fs
+        .readFileSync(`${__dirname}/../src/testdata/fingerprinting2.expected.sarif`)
+        .toString();
     // The test files are stored prettified, but addFingerprints outputs condensed JSON
     input = JSON.stringify(JSON.parse(input));
     expected = JSON.stringify(JSON.parse(expected));
     // The URIs in the SARIF files resolve to files in the testdata directory
-    process.env['GITHUB_WORKSPACE'] = path.normalize(__dirname + '/../src/testdata');
-    t.deepEqual(fingerprints.addFingerprints(input), expected);
+    const checkoutPath = path.normalize(`${__dirname}/../src/testdata`);
+    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger(true)), expected);
 });
 //# sourceMappingURL=fingerprints.test.js.map

lib/init-action.js

@@ -0,0 +1,128 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const core = __importStar(require("@actions/core"));
+const actionsUtil = __importStar(require("./actions-util"));
+const init_1 = require("./init");
+const languages_1 = require("./languages");
+const logging_1 = require("./logging");
+const repository_1 = require("./repository");
+async function sendSuccessStatusReport(startedAt, config, toolsVersion) {
+    var _a;
+    const statusReportBase = await actionsUtil.createStatusReportBase("init", "success", startedAt);
+    const languages = config.languages.join(",");
+    const workflowLanguages = actionsUtil.getOptionalInput("languages");
+    const paths = (config.originalUserInput.paths || []).join(",");
+    const pathsIgnore = (config.originalUserInput["paths-ignore"] || []).join(",");
+    const disableDefaultQueries = config.originalUserInput["disable-default-queries"]
+        ? languages
+        : "";
+    const queries = [];
+    let queriesInput = (_a = actionsUtil.getOptionalInput("queries")) === null || _a === void 0 ? void 0 : _a.trim();
+    if (queriesInput === undefined || queriesInput.startsWith("+")) {
+        queries.push(...(config.originalUserInput.queries || []).map((q) => q.uses));
+    }
+    if (queriesInput !== undefined) {
+        queriesInput = queriesInput.startsWith("+")
+            ? queriesInput.substr(1)
+            : queriesInput;
+        queries.push(...queriesInput.split(","));
+    }
+    const statusReport = {
+        ...statusReportBase,
+        languages,
+        workflow_languages: workflowLanguages || "",
+        paths,
+        paths_ignore: pathsIgnore,
+        disable_default_queries: disableDefaultQueries,
+        queries: queries.join(","),
+        tools_input: actionsUtil.getOptionalInput("tools") || "",
+        tools_resolved_version: toolsVersion,
+    };
+    await actionsUtil.sendStatusReport(statusReport);
+}
+async function run() {
+    const startedAt = new Date();
+    const logger = logging_1.getActionsLogger();
+    let config;
+    let codeql;
+    let toolsVersion;
+    try {
+        actionsUtil.prepareLocalRunEnvironment();
+        const workflowErrors = await actionsUtil.getWorkflowErrors();
+        if (workflowErrors.length > 0) {
+            core.warning(actionsUtil.formatWorkflowErrors(workflowErrors));
+        }
+        if (!(await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("init", "starting", startedAt, actionsUtil.formatWorkflowCause(workflowErrors))))) {
+            return;
+        }
+        const apiDetails = {
+            auth: actionsUtil.getRequiredInput("token"),
+            url: actionsUtil.getRequiredEnvParam("GITHUB_SERVER_URL"),
+        };
+        const initCodeQLResult = await init_1.initCodeQL(actionsUtil.getOptionalInput("tools"), apiDetails, actionsUtil.getRequiredEnvParam("RUNNER_TEMP"), actionsUtil.getRequiredEnvParam("RUNNER_TOOL_CACHE"), "actions", logger);
+        codeql = initCodeQLResult.codeql;
+        toolsVersion = initCodeQLResult.toolsVersion;
+        config = await init_1.initConfig(actionsUtil.getOptionalInput("languages"), actionsUtil.getOptionalInput("queries"), actionsUtil.getOptionalInput("config-file"), repository_1.parseRepositoryNwo(actionsUtil.getRequiredEnvParam("GITHUB_REPOSITORY")), actionsUtil.getRequiredEnvParam("RUNNER_TEMP"), actionsUtil.getRequiredEnvParam("RUNNER_TOOL_CACHE"), codeql, actionsUtil.getRequiredEnvParam("GITHUB_WORKSPACE"), apiDetails, "actions", logger);
+        if (config.languages.includes(languages_1.Language.python) &&
+            actionsUtil.getRequiredInput("setup-python-dependencies") === "true") {
+            try {
+                await init_1.installPythonDeps(codeql, logger);
+            }
+            catch (err) {
+                logger.warning(`${err.message} You can call this action with 'setup-python-dependencies: false' to disable this process`);
+            }
+        }
+    }
+    catch (e) {
+        core.setFailed(e.message);
+        console.log(e);
+        await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("init", "aborted", startedAt, e.message));
+        return;
+    }
+    try {
+        // Forward Go flags
+        const goFlags = process.env["GOFLAGS"];
+        if (goFlags) {
+            core.exportVariable("GOFLAGS", goFlags);
+            core.warning("Passing the GOFLAGS env parameter to the init action is deprecated. Please move this to the analyze action.");
+        }
+        // Setup CODEQL_RAM flag (todo improve this https://github.com/github/dsp-code-scanning/issues/935)
+        const codeqlRam = process.env["CODEQL_RAM"] || "6500";
+        core.exportVariable("CODEQL_RAM", codeqlRam);
+        const tracerConfig = await init_1.runInit(codeql, config);
+        if (tracerConfig !== undefined) {
+            for (const [key, value] of Object.entries(tracerConfig.env)) {
+                core.exportVariable(key, value);
+            }
+            if (process.platform === "win32") {
+                await init_1.injectWindowsTracer("Runner.Worker.exe", undefined, config, codeql, tracerConfig);
+            }
+        }
+        core.setOutput("codeql-path", config.codeQLCmd);
+    }
+    catch (error) {
+        core.setFailed(error.message);
+        console.log(error);
+        await actionsUtil.sendStatusReport(await actionsUtil.createStatusReportBase("init", "failure", startedAt, error.message, error.stack));
+        return;
+    }
+    await sendSuccessStatusReport(startedAt, config, toolsVersion);
+}
+async function runWrapper() {
+    try {
+        await run();
+    }
+    catch (error) {
+        core.setFailed(`init action failed: ${error}`);
+        console.log(error);
+    }
+}
+void runWrapper();
+//# sourceMappingURL=init-action.js.map

lib/init-action.js.map

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lib/init.js

@@ -0,0 +1,174 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const safeWhich = __importStar(require("@chrisgavin/safe-which"));
+const analysisPaths = __importStar(require("./analysis-paths"));
+const codeql_1 = require("./codeql");
+const configUtils = __importStar(require("./config-utils"));
+const tracer_config_1 = require("./tracer-config");
+const util = __importStar(require("./util"));
+async function initCodeQL(codeqlURL, apiDetails, tempDir, toolsDir, mode, logger) {
+    logger.startGroup("Setup CodeQL tools");
+    const { codeql, toolsVersion } = await codeql_1.setupCodeQL(codeqlURL, apiDetails, tempDir, toolsDir, mode, logger);
+    await codeql.printVersion();
+    logger.endGroup();
+    return { codeql, toolsVersion };
+}
+exports.initCodeQL = initCodeQL;
+async function initConfig(languagesInput, queriesInput, configFile, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger) {
+    logger.startGroup("Load language configuration");
+    const config = await configUtils.initConfig(languagesInput, queriesInput, configFile, repository, tempDir, toolCacheDir, codeQL, checkoutPath, apiDetails, mode, logger);
+    analysisPaths.printPathFiltersWarning(config, logger);
+    logger.endGroup();
+    return config;
+}
+exports.initConfig = initConfig;
+async function runInit(codeql, config) {
+    const sourceRoot = path.resolve();
+    fs.mkdirSync(util.getCodeQLDatabasesDir(config.tempDir), { recursive: true });
+    // TODO: replace this code once CodeQL supports multi-language tracing
+    for (const language of config.languages) {
+        // Init language database
+        await codeql.databaseInit(util.getCodeQLDatabasePath(config.tempDir, language), language, sourceRoot);
+    }
+    return await tracer_config_1.getCombinedTracerConfig(config, codeql);
+}
+exports.runInit = runInit;
+// Runs a powershell script to inject the tracer into a parent process
+// so it can tracer future processes, hopefully including the build process.
+// If processName is given then injects into the nearest parent process with
+// this name, otherwise uses the processLevel-th parent if defined, otherwise
+// defaults to the 3rd parent as a rough guess.
+async function injectWindowsTracer(processName, processLevel, config, codeql, tracerConfig) {
+    let script;
+    if (processName !== undefined) {
+        script = `
+      Param(
+          [Parameter(Position=0)]
+          [String]
+          $tracer
+      )
+
+      $id = $PID
+      while ($true) {
+        $p = Get-CimInstance -Class Win32_Process -Filter "ProcessId = $id"
+        Write-Host "Found process: $p"
+        if ($p -eq $null) {
+          throw "Could not determine ${processName} process"
+        }
+        if ($p[0].Name -eq "${processName}") {
+          Break
+        } else {
+          $id = $p[0].ParentProcessId
+        }
+      }
+      Write-Host "Final process: $p"
+
+      Invoke-Expression "&$tracer --inject=$id"`;
+    }
+    else {
+        // If the level is not defined then guess at the 3rd parent process.
+        // This won't be correct in every setting but it should be enough in most settings,
+        // and overestimating is likely better in this situation so we definitely trace
+        // what we want, though this does run the risk of interfering with future CI jobs.
+        // Note that the default of 3 doesn't work on github actions, so we include a
+        // special case in the script that checks for Runner.Worker.exe so we can still work
+        // on actions if the runner is invoked there.
+        processLevel = processLevel || 3;
+        script = `
+      Param(
+          [Parameter(Position=0)]
+          [String]
+          $tracer
+      )
+
+      $id = $PID
+      for ($i = 0; $i -le ${processLevel}; $i++) {
+        $p = Get-CimInstance -Class Win32_Process -Filter "ProcessId = $id"
+        Write-Host "Parent process \${i}: $p"
+        if ($p -eq $null) {
+          throw "Process tree ended before reaching required level"
+        }
+        # Special case just in case the runner is used on actions
+        if ($p[0].Name -eq "Runner.Worker.exe") {
+          Write-Host "Found Runner.Worker.exe process which means we are running on GitHub Actions"
+          Write-Host "Aborting search early and using process: $p"
+          Break
+        } elseif ($p[0].Name -eq "Agent.Worker.exe") {
+          Write-Host "Found Agent.Worker.exe process which means we are running on Azure Pipelines"
+          Write-Host "Aborting search early and using process: $p"
+          Break
+        } else {
+          $id = $p[0].ParentProcessId
+        }
+      }
+      Write-Host "Final process: $p"
+
+      Invoke-Expression "&$tracer --inject=$id"`;
+    }
+    const injectTracerPath = path.join(config.tempDir, "inject-tracer.ps1");
+    fs.writeFileSync(injectTracerPath, script);
+    await new toolrunner.ToolRunner(await safeWhich.safeWhich("powershell"), [
+        "-ExecutionPolicy",
+        "Bypass",
+        "-file",
+        injectTracerPath,
+        path.resolve(path.dirname(codeql.getPath()), "tools", "win64", "tracer.exe"),
+    ], { env: { ODASA_TRACER_CONFIGURATION: tracerConfig.spec } }).exec();
+}
+exports.injectWindowsTracer = injectWindowsTracer;
+async function installPythonDeps(codeql, logger) {
+    logger.startGroup("Setup Python dependencies");
+    const scriptsFolder = path.resolve(__dirname, "../python-setup");
+    // Setup tools on the Github hosted runners
+    if (process.env["ImageOS"] !== undefined) {
+        try {
+            if (process.platform === "win32") {
+                await new toolrunner.ToolRunner(await safeWhich.safeWhich("powershell"), [path.join(scriptsFolder, "install_tools.ps1")]).exec();
+            }
+            else {
+                await new toolrunner.ToolRunner(path.join(scriptsFolder, "install_tools.sh")).exec();
+            }
+        }
+        catch (e) {
+            // This script tries to install some needed tools in the runner. It should not fail, but if it does
+            // we just abort the process without failing the action
+            logger.endGroup();
+            logger.warning("Unable to download and extract the tools needed for installing the python dependencies. You can call this action with 'setup-python-dependencies: false' to disable this process.");
+            return;
+        }
+    }
+    // Install dependencies
+    try {
+        const script = "auto_install_packages.py";
+        if (process.platform === "win32") {
+            await new toolrunner.ToolRunner(await safeWhich.safeWhich("py"), [
+                "-3",
+                path.join(scriptsFolder, script),
+                path.dirname(codeql.getPath()),
+            ]).exec();
+        }
+        else {
+            await new toolrunner.ToolRunner(path.join(scriptsFolder, script), [
+                path.dirname(codeql.getPath()),
+            ]).exec();
+        }
+    }
+    catch (e) {
+        logger.endGroup();
+        logger.warning("We were unable to install your python dependencies. You can call this action with 'setup-python-dependencies: false' to disable this process.");
+        return;
+    }
+    logger.endGroup();
+}
+exports.installPythonDeps = installPythonDeps;
+//# sourceMappingURL=init.js.map

lib/init.js.map

@@ -0,0 +1 @@
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lib/languages.js

@@ -0,0 +1,45 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+// All the languages supported by CodeQL
+var Language;
+(function (Language) {
+    Language["csharp"] = "csharp";
+    Language["cpp"] = "cpp";
+    Language["go"] = "go";
+    Language["java"] = "java";
+    Language["javascript"] = "javascript";
+    Language["python"] = "python";
+})(Language = exports.Language || (exports.Language = {}));
+// Additional names for languages
+const LANGUAGE_ALIASES = {
+    c: Language.cpp,
+    "c++": Language.cpp,
+    "c#": Language.csharp,
+    typescript: Language.javascript,
+};
+// Translate from user input or GitHub's API names for languages to CodeQL's names for languages
+function parseLanguage(language) {
+    // Normalise to lower case
+    language = language.toLowerCase();
+    // See if it's an exact match
+    if (language in Language) {
+        return language;
+    }
+    // Check language aliases
+    if (language in LANGUAGE_ALIASES) {
+        return LANGUAGE_ALIASES[language];
+    }
+    return undefined;
+}
+exports.parseLanguage = parseLanguage;
+function isTracedLanguage(language) {
+    return (["cpp", "java", "csharp"].includes(language) ||
+        (process.env["CODEQL_EXTRACTOR_GO_BUILD_TRACING"] === "on" &&
+            language === Language.go));
+}
+exports.isTracedLanguage = isTracedLanguage;
+function isScannedLanguage(language) {
+    return !isTracedLanguage(language);
+}
+exports.isScannedLanguage = isScannedLanguage;
+//# sourceMappingURL=languages.js.map

lib/languages.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"languages.js","sourceRoot":"","sources":["../src/languages.ts"],"names":[],"mappings":";;AAAA,wCAAwC;AACxC,IAAY,QAOX;AAPD,WAAY,QAAQ;IAClB,6BAAiB,CAAA;IACjB,uBAAW,CAAA;IACX,qBAAS,CAAA;IACT,yBAAa,CAAA;IACb,qCAAyB,CAAA;IACzB,6BAAiB,CAAA;AACnB,CAAC,EAPW,QAAQ,GAAR,gBAAQ,KAAR,gBAAQ,QAOnB;AAED,iCAAiC;AACjC,MAAM,gBAAgB,GAAiC;IACrD,CAAC,EAAE,QAAQ,CAAC,GAAG;IACf,KAAK,EAAE,QAAQ,CAAC,GAAG;IACnB,IAAI,EAAE,QAAQ,CAAC,MAAM;IACrB,UAAU,EAAE,QAAQ,CAAC,UAAU;CAChC,CAAC;AAEF,gGAAgG;AAChG,SAAgB,aAAa,CAAC,QAAgB;IAC5C,0BAA0B;IAC1B,QAAQ,GAAG,QAAQ,CAAC,WAAW,EAAE,CAAC;IAElC,6BAA6B;IAC7B,IAAI,QAAQ,IAAI,QAAQ,EAAE;QACxB,OAAO,QAAoB,CAAC;KAC7B;IAED,yBAAyB;IACzB,IAAI,QAAQ,IAAI,gBAAgB,EAAE;QAChC,OAAO,gBAAgB,CAAC,QAAQ,CAAC,CAAC;KACnC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC;AAfD,sCAeC;AAED,SAAgB,gBAAgB,CAAC,QAAkB;IACjD,OAAO,CACL,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAC,QAAQ,CAAC,QAAQ,CAAC;QAC5C,CAAC,OAAO,CAAC,GAAG,CAAC,mCAAmC,CAAC,KAAK,IAAI;YACxD,QAAQ,KAAK,QAAQ,CAAC,EAAE,CAAC,CAC5B,CAAC;AACJ,CAAC;AAND,4CAMC;AAED,SAAgB,iBAAiB,CAAC,QAAkB;IAClD,OAAO,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAAC;AACrC,CAAC;AAFD,8CAEC"}

lib/languages.test.js

@@ -0,0 +1,44 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const ava_1 = __importDefault(require("ava"));
+const languages_1 = require("./languages");
+const testing_utils_1 = require("./testing-utils");
+testing_utils_1.setupTests(ava_1.default);
+ava_1.default("parseLanguage", async (t) => {
+    // Exact matches
+    t.deepEqual(languages_1.parseLanguage("csharp"), languages_1.Language.csharp);
+    t.deepEqual(languages_1.parseLanguage("cpp"), languages_1.Language.cpp);
+    t.deepEqual(languages_1.parseLanguage("go"), languages_1.Language.go);
+    t.deepEqual(languages_1.parseLanguage("java"), languages_1.Language.java);
+    t.deepEqual(languages_1.parseLanguage("javascript"), languages_1.Language.javascript);
+    t.deepEqual(languages_1.parseLanguage("python"), languages_1.Language.python);
+    // Aliases
+    t.deepEqual(languages_1.parseLanguage("c"), languages_1.Language.cpp);
+    t.deepEqual(languages_1.parseLanguage("c++"), languages_1.Language.cpp);
+    t.deepEqual(languages_1.parseLanguage("c#"), languages_1.Language.csharp);
+    t.deepEqual(languages_1.parseLanguage("typescript"), languages_1.Language.javascript);
+    // Not matches
+    t.deepEqual(languages_1.parseLanguage("foo"), undefined);
+    t.deepEqual(languages_1.parseLanguage(" "), undefined);
+    t.deepEqual(languages_1.parseLanguage(""), undefined);
+});
+ava_1.default("isTracedLanguage", async (t) => {
+    t.true(languages_1.isTracedLanguage(languages_1.Language.cpp));
+    t.true(languages_1.isTracedLanguage(languages_1.Language.java));
+    t.true(languages_1.isTracedLanguage(languages_1.Language.csharp));
+    t.false(languages_1.isTracedLanguage(languages_1.Language.go));
+    t.false(languages_1.isTracedLanguage(languages_1.Language.javascript));
+    t.false(languages_1.isTracedLanguage(languages_1.Language.python));
+});
+ava_1.default("isScannedLanguage", async (t) => {
+    t.false(languages_1.isScannedLanguage(languages_1.Language.cpp));
+    t.false(languages_1.isScannedLanguage(languages_1.Language.java));
+    t.false(languages_1.isScannedLanguage(languages_1.Language.csharp));
+    t.true(languages_1.isScannedLanguage(languages_1.Language.go));
+    t.true(languages_1.isScannedLanguage(languages_1.Language.javascript));
+    t.true(languages_1.isScannedLanguage(languages_1.Language.python));
+});
+//# sourceMappingURL=languages.test.js.map

lib/languages.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"languages.test.js","sourceRoot":"","sources":["../src/languages.test.ts"],"names":[],"mappings":";;;;;AAAA,8CAAuB;AAEvB,2CAKqB;AACrB,mDAA6C;AAE7C,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,eAAe,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAChC,gBAAgB;IAChB,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,QAAQ,CAAC,EAAE,oBAAQ,CAAC,MAAM,CAAC,CAAC;IACtD,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,KAAK,CAAC,EAAE,oBAAQ,CAAC,GAAG,CAAC,CAAC;IAChD,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,IAAI,CAAC,EAAE,oBAAQ,CAAC,EAAE,CAAC,CAAC;IAC9C,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,MAAM,CAAC,EAAE,oBAAQ,CAAC,IAAI,CAAC,CAAC;IAClD,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,YAAY,CAAC,EAAE,oBAAQ,CAAC,UAAU,CAAC,CAAC;IAC9D,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,QAAQ,CAAC,EAAE,oBAAQ,CAAC,MAAM,CAAC,CAAC;IAEtD,UAAU;IACV,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,GAAG,CAAC,EAAE,oBAAQ,CAAC,GAAG,CAAC,CAAC;IAC9C,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,KAAK,CAAC,EAAE,oBAAQ,CAAC,GAAG,CAAC,CAAC;IAChD,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,IAAI,CAAC,EAAE,oBAAQ,CAAC,MAAM,CAAC,CAAC;IAClD,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,YAAY,CAAC,EAAE,oBAAQ,CAAC,UAAU,CAAC,CAAC;IAE9D,cAAc;IACd,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,KAAK,CAAC,EAAE,SAAS,CAAC,CAAC;IAC7C,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,GAAG,CAAC,EAAE,SAAS,CAAC,CAAC;IAC3C,CAAC,CAAC,SAAS,CAAC,yBAAa,CAAC,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;AAC5C,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,kBAAkB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACnC,CAAC,CAAC,IAAI,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,GAAG,CAAC,CAAC,CAAC;IACvC,CAAC,CAAC,IAAI,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,IAAI,CAAC,CAAC,CAAC;IACxC,CAAC,CAAC,IAAI,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;IAE1C,CAAC,CAAC,KAAK,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;IACvC,CAAC,CAAC,KAAK,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,UAAU,CAAC,CAAC,CAAC;IAC/C,CAAC,CAAC,KAAK,CAAC,4BAAgB,CAAC,oBAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;AAC7C,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,mBAAmB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACpC,CAAC,CAAC,KAAK,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,GAAG,CAAC,CAAC,CAAC;IACzC,CAAC,CAAC,KAAK,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,IAAI,CAAC,CAAC,CAAC;IAC1C,CAAC,CAAC,KAAK,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;IAE5C,CAAC,CAAC,IAAI,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;IACvC,CAAC,CAAC,IAAI,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,UAAU,CAAC,CAAC,CAAC;IAC/C,CAAC,CAAC,IAAI,CAAC,6BAAiB,CAAC,oBAAQ,CAAC,MAAM,CAAC,CAAC,CAAC;AAC7C,CAAC,CAAC,CAAC"}

lib/logging.js

@@ -12,9 +12,9 @@ function getActionsLogger() {
     return core;
 }
 exports.getActionsLogger = getActionsLogger;
-function getCLILogger() {
+function getRunnerLogger(debugMode) {
     return {
-        debug: console.debug,
+        debug: debugMode ? console.debug : () => undefined,
         info: console.info,
         warning: console.warn,
         error: console.error,
@@ -22,5 +22,5 @@ function getCLILogger() {
         endGroup: () => undefined,
     };
 }
-exports.getCLILogger = getCLILogger;
+exports.getRunnerLogger = getRunnerLogger;
 //# sourceMappingURL=logging.js.map

lib/logging.js.map

@@ -1 +1 @@
-{"version":3,"file":"logging.js","sourceRoot":"","sources":["../src/logging.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AAYtC,SAAgB,gBAAgB;IAC9B,OAAO,IAAI,CAAC;AACd,CAAC;AAFD,4CAEC;AAED,SAAgB,YAAY;IAC1B,OAAO;QACL,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,OAAO,EAAE,OAAO,CAAC,IAAI;QACrB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,UAAU,EAAE,GAAG,EAAE,CAAC,SAAS;QAC3B,QAAQ,EAAE,GAAG,EAAE,CAAC,SAAS;KAC1B,CAAC;AACJ,CAAC;AATD,oCASC"}
+{"version":3,"file":"logging.js","sourceRoot":"","sources":["../src/logging.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AAYtC,SAAgB,gBAAgB;IAC9B,OAAO,IAAI,CAAC;AACd,CAAC;AAFD,4CAEC;AAED,SAAgB,eAAe,CAAC,SAAkB;IAChD,OAAO;QACL,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,SAAS;QAClD,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,OAAO,EAAE,OAAO,CAAC,IAAI;QACrB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,UAAU,EAAE,GAAG,EAAE,CAAC,SAAS;QAC3B,QAAQ,EAAE,GAAG,EAAE,CAAC,SAAS;KAC1B,CAAC;AACJ,CAAC;AATD,0CASC"}

lib/repository.js

@@ -1,7 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 function parseRepositoryNwo(input) {
-    const parts = input.split('/');
+    const parts = input.split("/");
     if (parts.length !== 2) {
         throw new Error(`"${input}" is not a valid repository name`);
     }

lib/runner.js

@@ -0,0 +1,265 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const os = __importStar(require("os"));
+const path = __importStar(require("path"));
+const commander_1 = require("commander");
+const analyze_1 = require("./analyze");
+const autobuild_1 = require("./autobuild");
+const codeql_1 = require("./codeql");
+const config_utils_1 = require("./config-utils");
+const init_1 = require("./init");
+const languages_1 = require("./languages");
+const logging_1 = require("./logging");
+const repository_1 = require("./repository");
+const upload_lib = __importStar(require("./upload-lib"));
+const util_1 = require("./util");
+const program = new commander_1.Command();
+program.version("0.0.1");
+function getTempDir(userInput) {
+    const tempDir = path.join(userInput || process.cwd(), "codeql-runner");
+    if (!fs.existsSync(tempDir)) {
+        fs.mkdirSync(tempDir, { recursive: true });
+    }
+    return tempDir;
+}
+function getToolsDir(userInput) {
+    const toolsDir = userInput || path.join(os.homedir(), "codeql-runner-tools");
+    if (!fs.existsSync(toolsDir)) {
+        fs.mkdirSync(toolsDir, { recursive: true });
+    }
+    return toolsDir;
+}
+const codeqlEnvJsonFilename = "codeql-env.json";
+// Imports the environment from codeqlEnvJsonFilename if not already present
+function importTracerEnvironment(config) {
+    if (!("ODASA_TRACER_CONFIGURATION" in process.env)) {
+        const jsonEnvFile = path.join(config.tempDir, codeqlEnvJsonFilename);
+        const env = JSON.parse(fs.readFileSync(jsonEnvFile).toString("utf-8"));
+        for (const key of Object.keys(env)) {
+            process.env[key] = env[key];
+        }
+    }
+}
+// Allow the user to specify refs in full refs/heads/branch format
+// or just the short branch name and prepend "refs/heads/" to it.
+function parseRef(userInput) {
+    if (userInput.startsWith("refs/")) {
+        return userInput;
+    }
+    else {
+        return `refs/heads/${userInput}`;
+    }
+}
+// Parses the --trace-process-name arg from process.argv, or returns undefined
+function parseTraceProcessName() {
+    for (let i = 0; i < process.argv.length - 1; i++) {
+        if (process.argv[i] === "--trace-process-name") {
+            return process.argv[i + 1];
+        }
+    }
+    return undefined;
+}
+// Parses the --trace-process-level arg from process.argv, or returns undefined
+function parseTraceProcessLevel() {
+    for (let i = 0; i < process.argv.length - 1; i++) {
+        if (process.argv[i] === "--trace-process-level") {
+            const v = parseInt(process.argv[i + 1], 10);
+            return isNaN(v) ? undefined : v;
+        }
+    }
+    return undefined;
+}
+program
+    .command("init")
+    .description("Initializes CodeQL")
+    .requiredOption("--repository <repository>", "Repository name. (Required)")
+    .requiredOption("--github-url <url>", "URL of GitHub instance. (Required)")
+    .requiredOption("--github-auth <auth>", "GitHub Apps token or personal access token. (Required)")
+    .option("--languages <languages>", "Comma-separated list of languages to analyze. Otherwise detects and analyzes all supported languages from the repo.")
+    .option("--queries <queries>", "Comma-separated list of additional queries to run. This overrides the same setting in a configuration file.")
+    .option("--config-file <file>", "Path to config file.")
+    .option("--codeql-path <path>", "Path to a copy of the CodeQL CLI executable to use. Otherwise downloads a copy.")
+    .option("--temp-dir <dir>", 'Directory to use for temporary files. Default is "./codeql-runner".')
+    .option("--tools-dir <dir>", "Directory to use for CodeQL tools and other files to store between runs. Default is a subdirectory of the home directory.")
+    .option("--checkout-path <path>", "Checkout path. Default is the current working directory.")
+    .option("--debug", "Print more verbose output", false)
+    // This prevents a message like: error: unknown option '--trace-process-level'
+    // Remove this if commander.js starts supporting hidden options.
+    .allowUnknownOption()
+    .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
+    try {
+        const tempDir = getTempDir(cmd.tempDir);
+        const toolsDir = getToolsDir(cmd.toolsDir);
+        // Wipe the temp dir
+        logger.info(`Cleaning temp directory ${tempDir}`);
+        fs.rmdirSync(tempDir, { recursive: true });
+        fs.mkdirSync(tempDir, { recursive: true });
+        const apiDetails = {
+            auth: cmd.githubAuth,
+            url: util_1.parseGithubUrl(cmd.githubUrl),
+        };
+        let codeql;
+        if (cmd.codeqlPath !== undefined) {
+            codeql = codeql_1.getCodeQL(cmd.codeqlPath);
+        }
+        else {
+            codeql = (await init_1.initCodeQL(undefined, apiDetails, tempDir, toolsDir, "runner", logger)).codeql;
+        }
+        const config = await init_1.initConfig(cmd.languages, cmd.queries, cmd.configFile, repository_1.parseRepositoryNwo(cmd.repository), tempDir, toolsDir, codeql, cmd.checkoutPath || process.cwd(), apiDetails, "runner", logger);
+        const tracerConfig = await init_1.runInit(codeql, config);
+        if (tracerConfig === undefined) {
+            return;
+        }
+        if (process.platform === "win32") {
+            await init_1.injectWindowsTracer(parseTraceProcessName(), parseTraceProcessLevel(), config, codeql, tracerConfig);
+        }
+        // Always output a json file of the env that can be consumed programmatically
+        const jsonEnvFile = path.join(config.tempDir, codeqlEnvJsonFilename);
+        fs.writeFileSync(jsonEnvFile, JSON.stringify(tracerConfig.env));
+        if (process.platform === "win32") {
+            const batEnvFile = path.join(config.tempDir, "codeql-env.bat");
+            const batEnvFileContents = Object.entries(tracerConfig.env)
+                .map(([key, value]) => `Set ${key}=${value}`)
+                .join("\n");
+            fs.writeFileSync(batEnvFile, batEnvFileContents);
+            const powershellEnvFile = path.join(config.tempDir, "codeql-env.sh");
+            const powershellEnvFileContents = Object.entries(tracerConfig.env)
+                .map(([key, value]) => `$env:${key}="${value}"`)
+                .join("\n");
+            fs.writeFileSync(powershellEnvFile, powershellEnvFileContents);
+            logger.info(`\nCodeQL environment output to "${jsonEnvFile}", "${batEnvFile}" and "${powershellEnvFile}". ` +
+                `Please export these variables to future processes so that CodeQL can monitor the build. ` +
+                `If using cmd/batch run "call ${batEnvFile}" ` +
+                `or if using PowerShell run "cat ${powershellEnvFile} | Invoke-Expression".`);
+        }
+        else {
+            // Assume that anything that's not windows is using a unix-style shell
+            const shEnvFile = path.join(config.tempDir, "codeql-env.sh");
+            const shEnvFileContents = Object.entries(tracerConfig.env)
+                // Some vars contain ${LIB} that we do not want to be expanded when executing this script
+                .map(([key, value]) => `export ${key}="${value.replace(/\$/g, "\\$")}"`)
+                .join("\n");
+            fs.writeFileSync(shEnvFile, shEnvFileContents);
+            logger.info(`\nCodeQL environment output to "${jsonEnvFile}" and "${shEnvFile}". ` +
+                `Please export these variables to future processes so that CodeQL can monitor the build, ` +
+                `for example by running ". ${shEnvFile}".`);
+        }
+    }
+    catch (e) {
+        logger.error("Init failed");
+        logger.error(e);
+        process.exitCode = 1;
+    }
+});
+program
+    .command("autobuild")
+    .description("Attempts to automatically build code")
+    .option("--language <language>", "The language to build. Otherwise will detect the dominant compiled language.")
+    .option("--temp-dir <dir>", 'Directory to use for temporary files. Default is "./codeql-runner".')
+    .option("--debug", "Print more verbose output", false)
+    .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
+    try {
+        const config = await config_utils_1.getConfig(getTempDir(cmd.tempDir), logger);
+        if (config === undefined) {
+            throw new Error("Config file could not be found at expected location. " +
+                "Was the 'init' command run with the same '--temp-dir' argument as this command.");
+        }
+        importTracerEnvironment(config);
+        let language = undefined;
+        if (cmd.language !== undefined) {
+            language = languages_1.parseLanguage(cmd.language);
+            if (language === undefined || !config.languages.includes(language)) {
+                throw new Error(`"${cmd.language}" is not a recognised language. ` +
+                    `Known languages in this project are ${config.languages.join(", ")}.`);
+            }
+        }
+        else {
+            language = autobuild_1.determineAutobuildLanguage(config, logger);
+        }
+        if (language !== undefined) {
+            await autobuild_1.runAutobuild(language, config, logger);
+        }
+    }
+    catch (e) {
+        logger.error("Autobuild failed");
+        logger.error(e);
+        process.exitCode = 1;
+    }
+});
+program
+    .command("analyze")
+    .description("Finishes extracting code and runs CodeQL queries")
+    .requiredOption("--repository <repository>", "Repository name. (Required)")
+    .requiredOption("--commit <commit>", "SHA of commit that was analyzed. (Required)")
+    .requiredOption("--ref <ref>", "Name of ref that was analyzed. (Required)")
+    .requiredOption("--github-url <url>", "URL of GitHub instance. (Required)")
+    .requiredOption("--github-auth <auth>", "GitHub Apps token or personal access token. (Required)")
+    .option("--checkout-path <path>", "Checkout path. Default is the current working directory.")
+    .option("--no-upload", "Do not upload results after analysis.")
+    .option("--output-dir <dir>", "Directory to output SARIF files to. Default is in the temp directory.")
+    .option("--ram <ram>", "Amount of memory to use when running queries. Default is to use all available memory.")
+    .option("--no-add-snippets", "Specify whether to include code snippets in the sarif output.")
+    .option("--threads <threads>", "Number of threads to use when running queries. " +
+    "Default is to use all available cores.")
+    .option("--temp-dir <dir>", 'Directory to use for temporary files. Default is "./codeql-runner".')
+    .option("--debug", "Print more verbose output", false)
+    .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
+    try {
+        const tempDir = getTempDir(cmd.tempDir);
+        const outputDir = cmd.outputDir || path.join(tempDir, "codeql-sarif");
+        const config = await config_utils_1.getConfig(getTempDir(cmd.tempDir), logger);
+        if (config === undefined) {
+            throw new Error("Config file could not be found at expected location. " +
+                "Was the 'init' command run with the same '--temp-dir' argument as this command.");
+        }
+        const apiDetails = {
+            auth: cmd.githubAuth,
+            url: util_1.parseGithubUrl(cmd.githubUrl),
+        };
+        await analyze_1.runAnalyze(repository_1.parseRepositoryNwo(cmd.repository), cmd.commit, parseRef(cmd.ref), undefined, undefined, undefined, cmd.checkoutPath || process.cwd(), undefined, apiDetails, cmd.upload, "runner", outputDir, util_1.getMemoryFlag(cmd.ram), util_1.getAddSnippetsFlag(cmd.addSnippets), util_1.getThreadsFlag(cmd.threads, logger), config, logger);
+    }
+    catch (e) {
+        logger.error("Analyze failed");
+        logger.error(e);
+        process.exitCode = 1;
+    }
+});
+program
+    .command("upload")
+    .description("Uploads a SARIF file, or all SARIF files from a directory, to code scanning")
+    .requiredOption("--sarif-file <file>", "SARIF file to upload, or a directory containing multiple SARIF files. (Required)")
+    .requiredOption("--repository <repository>", "Repository name. (Required)")
+    .requiredOption("--commit <commit>", "SHA of commit that was analyzed. (Required)")
+    .requiredOption("--ref <ref>", "Name of ref that was analyzed. (Required)")
+    .requiredOption("--github-url <url>", "URL of GitHub instance. (Required)")
+    .requiredOption("--github-auth <auth>", "GitHub Apps token or personal access token. (Required)")
+    .option("--checkout-path <path>", "Checkout path. Default is the current working directory.")
+    .option("--debug", "Print more verbose output", false)
+    .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
+    const apiDetails = {
+        auth: cmd.githubAuth,
+        url: util_1.parseGithubUrl(cmd.githubUrl),
+    };
+    try {
+        await upload_lib.upload(cmd.sarifFile, repository_1.parseRepositoryNwo(cmd.repository), cmd.commit, parseRef(cmd.ref), undefined, undefined, undefined, cmd.checkoutPath || process.cwd(), undefined, apiDetails, "runner", logger);
+    }
+    catch (e) {
+        logger.error("Upload failed");
+        logger.error(e);
+        process.exitCode = 1;
+    }
+});
+program.parse(process.argv);
+//# sourceMappingURL=runner.js.map

lib/setup-tools.js

@@ -1,76 +0,0 @@
-"use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const toolcache = __importStar(require("@actions/tool-cache"));
-const path = __importStar(require("path"));
-const semver = __importStar(require("semver"));
-class CodeQLSetup {
-    constructor(codeqlDist) {
-        this.dist = codeqlDist;
-        this.tools = path.join(this.dist, 'tools');
-        this.cmd = path.join(codeqlDist, 'codeql');
-        // TODO check process.arch ?
-        if (process.platform === 'win32') {
-            this.platform = 'win64';
-            if (this.cmd.endsWith('codeql')) {
-                this.cmd += ".exe";
-            }
-        }
-        else if (process.platform === 'linux') {
-            this.platform = 'linux64';
-        }
-        else if (process.platform === 'darwin') {
-            this.platform = 'osx64';
-        }
-        else {
-            throw new Error("Unsupported plaform: " + process.platform);
-        }
-    }
-}
-exports.CodeQLSetup = CodeQLSetup;
-async function setupCodeQL() {
-    try {
-        const codeqlURL = core.getInput('tools', { required: true });
-        const codeqlURLVersion = getCodeQLURLVersion(codeqlURL);
-        let codeqlFolder = toolcache.find('CodeQL', codeqlURLVersion);
-        if (codeqlFolder) {
-            core.debug(`CodeQL found in cache ${codeqlFolder}`);
-        }
-        else {
-            const codeqlPath = await toolcache.downloadTool(codeqlURL);
-            const codeqlExtracted = await toolcache.extractTar(codeqlPath);
-            codeqlFolder = await toolcache.cacheDir(codeqlExtracted, 'CodeQL', codeqlURLVersion);
-        }
-        return new CodeQLSetup(path.join(codeqlFolder, 'codeql'));
-    }
-    catch (e) {
-        core.error(e);
-        throw new Error("Unable to download and extract CodeQL CLI");
-    }
-}
-exports.setupCodeQL = setupCodeQL;
-function getCodeQLURLVersion(url) {
-    const match = url.match(/\/codeql-bundle-(.*)\//);
-    if (match === null || match.length < 2) {
-        throw new Error(`Malformed tools url: ${url}. Version could not be inferred`);
-    }
-    let version = match[1];
-    if (!semver.valid(version)) {
-        core.debug(`Bundle version ${version} is not in SemVer format. Will treat it as pre-release 0.0.0-${version}.`);
-        version = '0.0.0-' + version;
-    }
-    const s = semver.clean(version);
-    if (!s) {
-        throw new Error(`Malformed tools url ${url}. Version should be in SemVer format but have ${version} instead`);
-    }
-    return s;
-}
-exports.getCodeQLURLVersion = getCodeQLURLVersion;
-//# sourceMappingURL=setup-tools.js.map

lib/setup-tools.js.map

@@ -1 +0,0 @@
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lib/setup-tools.test.js

@@ -1,60 +0,0 @@
-"use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const toolcache = __importStar(require("@actions/tool-cache"));
-const ava_1 = __importDefault(require("ava"));
-const nock_1 = __importDefault(require("nock"));
-const path = __importStar(require("path"));
-const setupTools = __importStar(require("./setup-tools"));
-const testing_utils_1 = require("./testing-utils");
-const util = __importStar(require("./util"));
-testing_utils_1.silenceDebugOutput(ava_1.default);
-ava_1.default('download codeql bundle cache', async (t) => {
-    await util.withTmpDir(async (tmpDir) => {
-        process.env['GITHUB_WORKSPACE'] = tmpDir;
-        process.env['RUNNER_TEMP'] = path.join(tmpDir, 'temp');
-        process.env['RUNNER_TOOL_CACHE'] = path.join(tmpDir, 'cache');
-        const versions = ['20200601', '20200610'];
-        for (let i = 0; i < versions.length; i++) {
-            const version = versions[i];
-            nock_1.default('https://example.com')
-                .get(`/download/codeql-bundle-${version}/codeql-bundle.tar.gz`)
-                .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-            process.env['INPUT_TOOLS'] = `https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`;
-            await setupTools.setupCodeQL();
-            t.assert(toolcache.find('CodeQL', `0.0.0-${version}`));
-        }
-        const cachedVersions = toolcache.findAllVersions('CodeQL');
-        t.is(cachedVersions.length, 2);
-    });
-});
-ava_1.default('parse codeql bundle url version', t => {
-    const tests = {
-        '20200601': '0.0.0-20200601',
-        '20200601.0': '0.0.0-20200601.0',
-        '20200601.0.0': '20200601.0.0',
-        '1.2.3': '1.2.3',
-        '1.2.3-alpha': '1.2.3-alpha',
-        '1.2.3-beta.1': '1.2.3-beta.1',
-    };
-    for (const [version, expectedVersion] of Object.entries(tests)) {
-        const url = `https://github.com/.../codeql-bundle-${version}/...`;
-        try {
-            const parsedVersion = setupTools.getCodeQLURLVersion(url);
-            t.deepEqual(parsedVersion, expectedVersion);
-        }
-        catch (e) {
-            t.fail(e.message);
-        }
-    }
-});
-//# sourceMappingURL=setup-tools.test.js.map

lib/setup-tools.test.js.map

@@ -1 +0,0 @@
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lib/setup-tracer.js

@@ -1,224 +0,0 @@
-"use strict";
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
-    result["default"] = mod;
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const core = __importStar(require("@actions/core"));
-const exec = __importStar(require("@actions/exec"));
-const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-const analysisPaths = __importStar(require("./analysis-paths"));
-const codeql_1 = require("./codeql");
-const configUtils = __importStar(require("./config-utils"));
-const util = __importStar(require("./util"));
-const CRITICAL_TRACER_VARS = new Set(['SEMMLE_PRELOAD_libtrace',
-    ,
-    'SEMMLE_RUNNER',
-    ,
-    'SEMMLE_COPY_EXECUTABLES_ROOT',
-    ,
-    'SEMMLE_DEPTRACE_SOCKET',
-    ,
-    'SEMMLE_JAVA_TOOL_OPTIONS'
-]);
-async function tracerConfig(codeql, database, compilerSpec) {
-    const env = await codeql.getTracerEnv(database, compilerSpec);
-    const config = env['ODASA_TRACER_CONFIGURATION'];
-    const info = { spec: config, env: {} };
-    // Extract critical tracer variables from the environment
-    for (let entry of Object.entries(env)) {
-        const key = entry[0];
-        const value = entry[1];
-        // skip ODASA_TRACER_CONFIGURATION as it is handled separately
-        if (key === 'ODASA_TRACER_CONFIGURATION') {
-            continue;
-        }
-        // skip undefined values
-        if (typeof value === 'undefined') {
-            continue;
-        }
-        // Keep variables that do not exist in current environment. In addition always keep
-        // critical and CODEQL_ variables
-        if (typeof process.env[key] === 'undefined' || CRITICAL_TRACER_VARS.has(key) || key.startsWith('CODEQL_')) {
-            info.env[key] = value;
-        }
-    }
-    return info;
-}
-function concatTracerConfigs(configs) {
-    // A tracer config is a map containing additional environment variables and a tracer 'spec' file.
-    // A tracer 'spec' file has the following format [log_file, number_of_blocks, blocks_text]
-    // Merge the environments
-    const env = {};
-    let copyExecutables = false;
-    let envSize = 0;
-    for (const v of configs) {
-        for (let e of Object.entries(v.env)) {
-            const name = e[0];
-            const value = e[1];
-            // skip SEMMLE_COPY_EXECUTABLES_ROOT as it is handled separately
-            if (name === 'SEMMLE_COPY_EXECUTABLES_ROOT') {
-                copyExecutables = true;
-            }
-            else if (name in env) {
-                if (env[name] !== value) {
-                    throw Error('Incompatible values in environment parameter ' +
-                        name + ': ' + env[name] + ' and ' + value);
-                }
-            }
-            else {
-                env[name] = value;
-                envSize += 1;
-            }
-        }
-    }
-    // Concatenate spec files into a new spec file
-    let languages = Object.keys(configs);
-    const cppIndex = languages.indexOf('cpp');
-    // Make sure cpp is the last language, if it's present since it must be concatenated last
-    if (cppIndex !== -1) {
-        let lastLang = languages[languages.length - 1];
-        languages[languages.length - 1] = languages[cppIndex];
-        languages[cppIndex] = lastLang;
-    }
-    let totalLines = [];
-    let totalCount = 0;
-    for (let lang of languages) {
-        const lines = fs.readFileSync(configs[lang].spec, 'utf8').split(/\r?\n/);
-        const count = parseInt(lines[1], 10);
-        totalCount += count;
-        totalLines.push(...lines.slice(2));
-    }
-    const tempFolder = util.getRequiredEnvParam('RUNNER_TEMP');
-    const newLogFilePath = path.resolve(tempFolder, 'compound-build-tracer.log');
-    const spec = path.resolve(tempFolder, 'compound-spec');
-    const compoundTempFolder = path.resolve(tempFolder, 'compound-temp');
-    const newSpecContent = [newLogFilePath, totalCount.toString(10), ...totalLines];
-    if (copyExecutables) {
-        env['SEMMLE_COPY_EXECUTABLES_ROOT'] = compoundTempFolder;
-        envSize += 1;
-    }
-    fs.writeFileSync(spec, newSpecContent.join('\n'));
-    // Prepare the content of the compound environment file
-    let buffer = Buffer.alloc(4);
-    buffer.writeInt32LE(envSize, 0);
-    for (let e of Object.entries(env)) {
-        const key = e[0];
-        const value = e[1];
-        const lineBuffer = new Buffer(key + '=' + value + '\0', 'utf8');
-        const sizeBuffer = Buffer.alloc(4);
-        sizeBuffer.writeInt32LE(lineBuffer.length, 0);
-        buffer = Buffer.concat([buffer, sizeBuffer, lineBuffer]);
-    }
-    // Write the compound environment
-    const envPath = spec + '.environment';
-    fs.writeFileSync(envPath, buffer);
-    return { env, spec };
-}
-async function sendSuccessStatusReport(startedAt, config) {
-    const statusReportBase = await util.createStatusReportBase('init', 'success', startedAt);
-    const languages = config.languages.join(',');
-    const workflowLanguages = core.getInput('languages', { required: false });
-    const paths = (config.originalUserInput.paths || []).join(',');
-    const pathsIgnore = (config.originalUserInput['paths-ignore'] || []).join(',');
-    const disableDefaultQueries = config.originalUserInput['disable-default-queries'] ? languages : '';
-    const queries = (config.originalUserInput.queries || []).map(q => q.uses).join(',');
-    const statusReport = {
-        ...statusReportBase,
-        languages: languages,
-        workflow_languages: workflowLanguages,
-        paths: paths,
-        paths_ignore: pathsIgnore,
-        disable_default_queries: disableDefaultQueries,
-        queries: queries,
-    };
-    await util.sendStatusReport(statusReport);
-}
-async function run() {
-    const startedAt = new Date();
-    let config;
-    let codeql;
-    try {
-        util.prepareLocalRunEnvironment();
-        if (!await util.sendStatusReport(await util.createStatusReportBase('init', 'starting', startedAt), true)) {
-            return;
-        }
-        core.startGroup('Setup CodeQL tools');
-        codeql = await codeql_1.setupCodeQL();
-        await codeql.printVersion();
-        core.endGroup();
-        core.startGroup('Load language configuration');
-        config = await configUtils.initConfig();
-        analysisPaths.includeAndExcludeAnalysisPaths(config);
-        core.endGroup();
-    }
-    catch (e) {
-        core.setFailed(e.message);
-        console.log(e);
-        await util.sendStatusReport(await util.createStatusReportBase('init', 'aborted', startedAt, e.message));
-        return;
-    }
-    try {
-        const sourceRoot = path.resolve();
-        // Forward Go flags
-        const goFlags = process.env['GOFLAGS'];
-        if (goFlags) {
-            core.exportVariable('GOFLAGS', goFlags);
-            core.warning("Passing the GOFLAGS env parameter to the init action is deprecated. Please move this to the analyze action.");
-        }
-        // Setup CODEQL_RAM flag (todo improve this https://github.com/github/dsp-code-scanning/issues/935)
-        const codeqlRam = process.env['CODEQL_RAM'] || '6500';
-        core.exportVariable('CODEQL_RAM', codeqlRam);
-        const databaseFolder = util.getCodeQLDatabasesDir();
-        fs.mkdirSync(databaseFolder, { recursive: true });
-        let tracedLanguageConfigs = [];
-        // TODO: replace this code once CodeQL supports multi-language tracing
-        for (let language of config.languages) {
-            const languageDatabase = path.join(databaseFolder, language);
-            // Init language database
-            await codeql.databaseInit(languageDatabase, language, sourceRoot);
-            // TODO: add better detection of 'traced languages' instead of using a hard coded list
-            if (codeql_1.isTracedLanguage(language)) {
-                const config = await tracerConfig(codeql, languageDatabase);
-                tracedLanguageConfigs.push(config);
-            }
-        }
-        if (tracedLanguageConfigs.length > 0) {
-            const mainTracerConfig = concatTracerConfigs(tracedLanguageConfigs);
-            if (mainTracerConfig.spec) {
-                for (let entry of Object.entries(mainTracerConfig.env)) {
-                    core.exportVariable(entry[0], entry[1]);
-                }
-                core.exportVariable('ODASA_TRACER_CONFIGURATION', mainTracerConfig.spec);
-                if (process.platform === 'darwin') {
-                    core.exportVariable('DYLD_INSERT_LIBRARIES', path.join(codeql.getDir(), 'tools', 'osx64', 'libtrace.dylib'));
-                }
-                else if (process.platform === 'win32') {
-                    await exec.exec('powershell', [
-                        path.resolve(__dirname, '..', 'src', 'inject-tracer.ps1'),
-                        path.resolve(codeql.getDir(), 'tools', 'win64', 'tracer.exe'),
-                    ], { env: { 'ODASA_TRACER_CONFIGURATION': mainTracerConfig.spec } });
-                }
-                else {
-                    core.exportVariable('LD_PRELOAD', path.join(codeql.getDir(), 'tools', 'linux64', '${LIB}trace.so'));
-                }
-            }
-        }
-    }
-    catch (error) {
-        core.setFailed(error.message);
-        console.log(error);
-        await util.sendStatusReport(await util.createStatusReportBase('init', 'failure', startedAt, error.message, error.stack));
-        return;
-    }
-    await sendSuccessStatusReport(startedAt, config);
-}
-run().catch(e => {
-    core.setFailed("init action failed: " + e);
-    console.log(e);
-});
-//# sourceMappingURL=setup-tracer.js.map

lib/shared-environment.js

@@ -1,10 +1,10 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ODASA_TRACER_CONFIGURATION = 'ODASA_TRACER_CONFIGURATION';
+exports.ODASA_TRACER_CONFIGURATION = "ODASA_TRACER_CONFIGURATION";
 // The time at which the first action (normally init) started executing.
 // If a workflow invokes a different action without first invoking the init
 // action (i.e. the upload action is being used by a third-party integrator)
 // then this variable will be assigned the start time of the action invoked
 // rather that the init action.
-exports.CODEQL_WORKFLOW_STARTED_AT = 'CODEQL_WORKFLOW_STARTED_AT';
+exports.CODEQL_WORKFLOW_STARTED_AT = "CODEQL_WORKFLOW_STARTED_AT";
 //# sourceMappingURL=shared-environment.js.map

lib/test-utils.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-function silenceDebugOutput(test) {
-    const typedTest = test;
-    typedTest.beforeEach(t => {
-        const processStdoutWrite = process.stdout.write.bind(process.stdout);
-        t.context.write = processStdoutWrite;
-        process.stdout.write = (str, encoding, cb) => {
-            // Core library will directly call process.stdout.write for commands
-            // We don't want :: commands to be executed by the runner during tests
-            if (!str.match(/^::/)) {
-                processStdoutWrite(str, encoding, cb);
-            }
-            return true;
-        };
-    });
-    typedTest.afterEach(t => {
-        process.stdout.write = t.context.write;
-    });
-}
-exports.silenceDebugOutput = silenceDebugOutput;
-//# sourceMappingURL=test-utils.js.map

lib/test-utils.js.map

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lib/testing-utils.js

@@ -19,19 +19,19 @@ function wrapOutput(context) {
     // write(str: Uint8Array | string, encoding?: string, cb?: (err?: Error) => void): boolean;
     return (chunk, encoding, cb) => {
         // Work out which method overload we are in
-        if (cb === undefined && typeof encoding === 'function') {
+        if (cb === undefined && typeof encoding === "function") {
             cb = encoding;
             encoding = undefined;
         }
         // Record the output
-        if (typeof chunk === 'string') {
+        if (typeof chunk === "string") {
             context.testOutput += chunk;
         }
         else {
-            context.testOutput += new TextDecoder(encoding || 'utf-8').decode(chunk);
+            context.testOutput += new TextDecoder(encoding || "utf-8").decode(chunk);
         }
         // Satisfy contract by calling callback when done
-        if (cb !== undefined && typeof cb === 'function') {
+        if (cb !== undefined && typeof cb === "function") {
             cb();
         }
         return true;
@@ -39,7 +39,7 @@ function wrapOutput(context) {
 }
 function setupTests(test) {
     const typedTest = test;
-    typedTest.beforeEach(t => {
+    typedTest.beforeEach((t) => {
         // Set an empty CodeQL object so that all method calls will fail
         // unless the test explicitly sets one up.
         CodeQL.setCodeQL({});
@@ -56,11 +56,8 @@ function setupTests(test) {
         // process.env only has strings fields, so a shallow copy is fine.
         t.context.env = {};
         Object.assign(t.context.env, process.env);
-        // Any test that runs code that expects to only be run on actions
-        // will depend on various environment variables.
-        process.env['GITHUB_API_URL'] = 'https://github.localhost/api/v3';
     });
-    typedTest.afterEach.always(t => {
+    typedTest.afterEach.always((t) => {
         // Restore stdout and stderr
         // The captured output is only replayed if the test failed
         process.stdout.write = t.context.stdoutWrite;

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lib/toolrunner-error-catcher.js

@@ -0,0 +1,87 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const safeWhich = __importStar(require("@chrisgavin/safe-which"));
+/**
+ * Wrapper for toolrunner.Toolrunner which checks for specific return code and/or regex matches in console output.
+ * Output will be streamed to the live console as well as captured for subsequent processing.
+ * Returns promise with return code
+ *
+ * @param     commandLine        command to execute
+ * @param     args               optional arguments for tool. Escaping is handled by the lib.
+ * @param     matchers           defines specific codes and/or regexes that should lead to return of a custom error
+ * @param     options            optional exec options.  See ExecOptions
+ * @returns   Promise<number>    exit code
+ */
+async function toolrunnerErrorCatcher(commandLine, args, matchers, options) {
+    var _a, _b, _c;
+    let stdout = "";
+    let stderr = "";
+    const listeners = {
+        stdout: (data) => {
+            var _a, _b;
+            stdout += data.toString();
+            if (((_b = (_a = options) === null || _a === void 0 ? void 0 : _a.listeners) === null || _b === void 0 ? void 0 : _b.stdout) !== undefined) {
+                options.listeners.stdout(data);
+            }
+            else {
+                // if no stdout listener was originally defined then we match default behavior of Toolrunner
+                process.stdout.write(data);
+            }
+        },
+        stderr: (data) => {
+            var _a, _b;
+            stderr += data.toString();
+            if (((_b = (_a = options) === null || _a === void 0 ? void 0 : _a.listeners) === null || _b === void 0 ? void 0 : _b.stderr) !== undefined) {
+                options.listeners.stderr(data);
+            }
+            else {
+                // if no stderr listener was originally defined then we match default behavior of Toolrunner
+                process.stderr.write(data);
+            }
+        },
+    };
+    // we capture the original return code or error so that if no match is found we can duplicate the behavior
+    let returnState;
+    try {
+        returnState = await new toolrunner.ToolRunner(await safeWhich.safeWhich(commandLine), args, {
+            ...options,
+            listeners,
+            ignoreReturnCode: true,
+        }).exec();
+    }
+    catch (e) {
+        returnState = e;
+    }
+    // if there is a zero return code then we do not apply the matchers
+    if (returnState === 0)
+        return returnState;
+    if (matchers) {
+        for (const matcher of matchers) {
+            if (matcher.exitCode === returnState || ((_a = matcher.outputRegex) === null || _a === void 0 ? void 0 : _a.test(stderr)) || ((_b = matcher.outputRegex) === null || _b === void 0 ? void 0 : _b.test(stdout))) {
+                throw new Error(matcher.message);
+            }
+        }
+    }
+    if (typeof returnState === "number") {
+        // only if we were instructed to ignore the return code do we ever return it non-zero
+        if ((_c = options) === null || _c === void 0 ? void 0 : _c.ignoreReturnCode) {
+            return returnState;
+        }
+        else {
+            throw new Error(`The process '${commandLine}' failed with exit code ${returnState}`);
+        }
+    }
+    else {
+        throw returnState;
+    }
+}
+exports.toolrunnerErrorCatcher = toolrunnerErrorCatcher;
+//# sourceMappingURL=toolrunner-error-catcher.js.map

lib/toolrunner-error-catcher.js.map

@@ -0,0 +1 @@
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lib/toolrunner-error-catcher.test.js

@@ -0,0 +1,145 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const exec = __importStar(require("@actions/exec"));
+const ava_1 = __importDefault(require("ava"));
+const testing_utils_1 = require("./testing-utils");
+const toolrunner_error_catcher_1 = require("./toolrunner-error-catcher");
+testing_utils_1.setupTests(ava_1.default);
+ava_1.default("matchers are never applied if non-error exit", async (t) => {
+    const testArgs = buildDummyArgs("foo bar\\nblort qux", "foo bar\\nblort qux", "", 0);
+    const matchers = [
+        { exitCode: 123, outputRegex: new RegExp("foo bar"), message: "error!!!" },
+    ];
+    t.deepEqual(await exec.exec("node", testArgs), 0);
+    t.deepEqual(await toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), 0);
+});
+ava_1.default("regex matchers are applied to stdout for non-zero exit code", async (t) => {
+    const testArgs = buildDummyArgs("foo bar\\nblort qux", "", "", 1);
+    const matchers = [
+        { exitCode: 123, outputRegex: new RegExp("foo bar"), message: "🦄" },
+    ];
+    await t.throwsAsync(exec.exec("node", testArgs), {
+        instanceOf: Error,
+        message: "The process 'node' failed with exit code 1",
+    });
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), {
+        instanceOf: Error,
+        message: "🦄",
+    });
+});
+ava_1.default("regex matchers are applied to stderr for non-zero exit code", async (t) => {
+    const testArgs = buildDummyArgs("non matching string", "foo bar\\nblort qux", "", 1);
+    const matchers = [
+        { exitCode: 123, outputRegex: new RegExp("foo bar"), message: "🦄" },
+    ];
+    await t.throwsAsync(exec.exec("node", testArgs), {
+        instanceOf: Error,
+        message: "The process 'node' failed with exit code 1",
+    });
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), {
+        instanceOf: Error,
+        message: "🦄",
+    });
+});
+ava_1.default("matcher returns correct error message when multiple matchers defined", async (t) => {
+    const testArgs = buildDummyArgs("non matching string", "foo bar\\nblort qux", "", 1);
+    const matchers = [
+        { exitCode: 456, outputRegex: new RegExp("lorem ipsum"), message: "😩" },
+        { exitCode: 123, outputRegex: new RegExp("foo bar"), message: "🦄" },
+        { exitCode: 789, outputRegex: new RegExp("blah blah"), message: "🤦‍♂️" },
+    ];
+    await t.throwsAsync(exec.exec("node", testArgs), {
+        instanceOf: Error,
+        message: "The process 'node' failed with exit code 1",
+    });
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), {
+        instanceOf: Error,
+        message: "🦄",
+    });
+});
+ava_1.default("matcher returns first match to regex when multiple matches", async (t) => {
+    const testArgs = buildDummyArgs("non matching string", "foo bar\\nblort qux", "", 1);
+    const matchers = [
+        { exitCode: 123, outputRegex: new RegExp("foo bar"), message: "🦄" },
+        { exitCode: 789, outputRegex: new RegExp("blah blah"), message: "🤦‍♂️" },
+        { exitCode: 987, outputRegex: new RegExp("foo bar"), message: "🚫" },
+    ];
+    await t.throwsAsync(exec.exec("node", testArgs), {
+        instanceOf: Error,
+        message: "The process 'node' failed with exit code 1",
+    });
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), {
+        instanceOf: Error,
+        message: "🦄",
+    });
+});
+ava_1.default("exit code matchers are applied", async (t) => {
+    const testArgs = buildDummyArgs("non matching string", "foo bar\\nblort qux", "", 123);
+    const matchers = [
+        {
+            exitCode: 123,
+            outputRegex: new RegExp("this will not match"),
+            message: "🦄",
+        },
+    ];
+    await t.throwsAsync(exec.exec("node", testArgs), {
+        instanceOf: Error,
+        message: "The process 'node' failed with exit code 123",
+    });
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, matchers), {
+        instanceOf: Error,
+        message: "🦄",
+    });
+});
+ava_1.default("execErrorCatcher respects the ignoreReturnValue option", async (t) => {
+    const testArgs = buildDummyArgs("standard output", "error output", "", 199);
+    await t.throwsAsync(toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, [], { ignoreReturnCode: false }), { instanceOf: Error });
+    t.deepEqual(await toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, [], {
+        ignoreReturnCode: true,
+    }), 199);
+});
+ava_1.default("execErrorCatcher preserves behavior of provided listeners", async (t) => {
+    const stdoutExpected = "standard output";
+    const stderrExpected = "error output";
+    let stdoutActual = "";
+    let stderrActual = "";
+    const listeners = {
+        stdout: (data) => {
+            stdoutActual += data.toString();
+        },
+        stderr: (data) => {
+            stderrActual += data.toString();
+        },
+    };
+    const testArgs = buildDummyArgs(stdoutExpected, stderrExpected, "", 0);
+    t.deepEqual(await toolrunner_error_catcher_1.toolrunnerErrorCatcher("node", testArgs, [], {
+        listeners,
+    }), 0);
+    t.deepEqual(stdoutActual, `${stdoutExpected}\n`);
+    t.deepEqual(stderrActual, `${stderrExpected}\n`);
+});
+function buildDummyArgs(stdoutContents, stderrContents, desiredErrorMessage, desiredExitCode) {
+    let command = "";
+    if (stdoutContents)
+        command += `console.log("${stdoutContents}");`;
+    if (stderrContents)
+        command += `console.error("${stderrContents}");`;
+    if (command.length === 0)
+        throw new Error("Must provide contents for either stdout or stderr");
+    if (desiredErrorMessage)
+        command += `throw new Error("${desiredErrorMessage}");`;
+    if (desiredExitCode)
+        command += `process.exitCode = ${desiredExitCode};`;
+    return ["-e", command];
+}
+//# sourceMappingURL=toolrunner-error-catcher.test.js.map

lib/tracer-config.js

@@ -0,0 +1,147 @@
+"use strict";
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (Object.hasOwnProperty.call(mod, k)) result[k] = mod[k];
+    result["default"] = mod;
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const languages_1 = require("./languages");
+const util = __importStar(require("./util"));
+const CRITICAL_TRACER_VARS = new Set([
+    "SEMMLE_PRELOAD_libtrace",
+    "SEMMLE_RUNNER",
+    "SEMMLE_COPY_EXECUTABLES_ROOT",
+    "SEMMLE_DEPTRACE_SOCKET",
+    "SEMMLE_JAVA_TOOL_OPTIONS",
+]);
+async function getTracerConfigForLanguage(codeql, config, language) {
+    const env = await codeql.getTracerEnv(util.getCodeQLDatabasePath(config.tempDir, language));
+    const spec = env["ODASA_TRACER_CONFIGURATION"];
+    const info = { spec, env: {} };
+    // Extract critical tracer variables from the environment
+    for (const entry of Object.entries(env)) {
+        const key = entry[0];
+        const value = entry[1];
+        // skip ODASA_TRACER_CONFIGURATION as it is handled separately
+        if (key === "ODASA_TRACER_CONFIGURATION") {
+            continue;
+        }
+        // skip undefined values
+        if (typeof value === "undefined") {
+            continue;
+        }
+        // Keep variables that do not exist in current environment. In addition always keep
+        // critical and CODEQL_ variables
+        if (typeof process.env[key] === "undefined" ||
+            CRITICAL_TRACER_VARS.has(key) ||
+            key.startsWith("CODEQL_")) {
+            info.env[key] = value;
+        }
+    }
+    return info;
+}
+exports.getTracerConfigForLanguage = getTracerConfigForLanguage;
+function concatTracerConfigs(tracerConfigs, config) {
+    // A tracer config is a map containing additional environment variables and a tracer 'spec' file.
+    // A tracer 'spec' file has the following format [log_file, number_of_blocks, blocks_text]
+    // Merge the environments
+    const env = {};
+    let copyExecutables = false;
+    let envSize = 0;
+    for (const v of Object.values(tracerConfigs)) {
+        for (const e of Object.entries(v.env)) {
+            const name = e[0];
+            const value = e[1];
+            // skip SEMMLE_COPY_EXECUTABLES_ROOT as it is handled separately
+            if (name === "SEMMLE_COPY_EXECUTABLES_ROOT") {
+                copyExecutables = true;
+            }
+            else if (name in env) {
+                if (env[name] !== value) {
+                    throw Error(`Incompatible values in environment parameter ${name}: ${env[name]} and ${value}`);
+                }
+            }
+            else {
+                env[name] = value;
+                envSize += 1;
+            }
+        }
+    }
+    // Concatenate spec files into a new spec file
+    const languages = Object.keys(tracerConfigs);
+    const cppIndex = languages.indexOf("cpp");
+    // Make sure cpp is the last language, if it's present since it must be concatenated last
+    if (cppIndex !== -1) {
+        const lastLang = languages[languages.length - 1];
+        languages[languages.length - 1] = languages[cppIndex];
+        languages[cppIndex] = lastLang;
+    }
+    const totalLines = [];
+    let totalCount = 0;
+    for (const lang of languages) {
+        const lines = fs
+            .readFileSync(tracerConfigs[lang].spec, "utf8")
+            .split(/\r?\n/);
+        const count = parseInt(lines[1], 10);
+        totalCount += count;
+        totalLines.push(...lines.slice(2));
+    }
+    const newLogFilePath = path.resolve(config.tempDir, "compound-build-tracer.log");
+    const spec = path.resolve(config.tempDir, "compound-spec");
+    const compoundTempFolder = path.resolve(config.tempDir, "compound-temp");
+    const newSpecContent = [
+        newLogFilePath,
+        totalCount.toString(10),
+        ...totalLines,
+    ];
+    if (copyExecutables) {
+        env["SEMMLE_COPY_EXECUTABLES_ROOT"] = compoundTempFolder;
+        envSize += 1;
+    }
+    fs.writeFileSync(spec, newSpecContent.join("\n"));
+    // Prepare the content of the compound environment file
+    let buffer = Buffer.alloc(4);
+    buffer.writeInt32LE(envSize, 0);
+    for (const e of Object.entries(env)) {
+        const key = e[0];
+        const value = e[1];
+        const lineBuffer = Buffer.from(`${key}=${value}\0`, "utf8");
+        const sizeBuffer = Buffer.alloc(4);
+        sizeBuffer.writeInt32LE(lineBuffer.length, 0);
+        buffer = Buffer.concat([buffer, sizeBuffer, lineBuffer]);
+    }
+    // Write the compound environment
+    const envPath = `${spec}.environment`;
+    fs.writeFileSync(envPath, buffer);
+    return { env, spec };
+}
+exports.concatTracerConfigs = concatTracerConfigs;
+async function getCombinedTracerConfig(config, codeql) {
+    // Abort if there are no traced languages as there's nothing to do
+    const tracedLanguages = config.languages.filter(languages_1.isTracedLanguage);
+    if (tracedLanguages.length === 0) {
+        return undefined;
+    }
+    // Get all the tracer configs and combine them together
+    const tracedLanguageConfigs = {};
+    for (const language of tracedLanguages) {
+        tracedLanguageConfigs[language] = await getTracerConfigForLanguage(codeql, config, language);
+    }
+    const mainTracerConfig = concatTracerConfigs(tracedLanguageConfigs, config);
+    // Add a couple more variables
+    mainTracerConfig.env["ODASA_TRACER_CONFIGURATION"] = mainTracerConfig.spec;
+    const codeQLDir = path.dirname(codeql.getPath());
+    if (process.platform === "darwin") {
+        mainTracerConfig.env["DYLD_INSERT_LIBRARIES"] = path.join(codeQLDir, "tools", "osx64", "libtrace.dylib");
+    }
+    else if (process.platform !== "win32") {
+        mainTracerConfig.env["LD_PRELOAD"] = path.join(codeQLDir, "tools", "linux64", "${LIB}trace.so");
+    }
+    return mainTracerConfig;
+}
+exports.getCombinedTracerConfig = getCombinedTracerConfig;
+//# sourceMappingURL=tracer-config.js.map