Merge pull request #3026 from github/update-v3.29.9-cc722e476

Merge main into releases/v3

.github/actions/check-codescanning-config/action.yml

@@ -61,11 +61,12 @@ runs:
     - name: Check config
       working-directory: ${{ github.action_path }}
       shell: bash
-      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
-
+      env:
+        EXPECTED_CONFIG_FILE_CONTENTS: '${{ inputs.expected-config-file-contents }}'
+      run: ts-node ./index.ts "$RUNNER_TEMP/user-config.yaml" "$EXPECTED_CONFIG_FILE_CONTENTS"
     - name: Clean up
       shell: bash
       if: always()
       run: |
-        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
-        rm -rf ${{ runner.temp }}/user-config.yaml
+        rm -rf $RUNNER_TEMP/codescanning-config-cli-test
+        rm -rf $RUNNER_TEMP/user-config.yaml

.github/actions/check-codescanning-config/index.ts

@@ -8,7 +8,7 @@ const actualConfig = loadActualConfig()
 
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
-  core.info('No expected configuration provided')
+  core.setFailed('No expected configuration provided')
 } else {
   core.startGroup('Expected generated user config')
   core.info(yaml.dump(JSON.parse(rawExpectedConfig)))

.github/actions/prepare-test/action.yml

@@ -29,24 +29,27 @@ runs:
     - id: get-url
       name: Determine URL
       shell: bash
+      env:
+        VERSION: ${{ inputs.version }}
+        USE_ALL_PLATFORM_BUNDLE: ${{ inputs.use-all-platform-bundle }}
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ ${{ inputs.version }} == "linked" ]]; then
+        if [[ "$VERSION" == "linked" ]]; then
           echo "tools-url=linked" >> "$GITHUB_OUTPUT"
           exit 0
-        elif [[ ${{ inputs.version }} == "default" ]]; then
+        elif [[ "$VERSION" == "default" ]]; then
           echo "tools-url=" >> "$GITHUB_OUTPUT"
           exit 0
         fi
 
-        if [[ ${{ inputs.version }} == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
+        if [[ "$VERSION" == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
           extension="tar.zst"
         else
           extension="tar.gz"
         fi
 
-        if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
+        if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
           artifact_name="codeql-bundle.$extension"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
           artifact_name="codeql-bundle-linux64.$extension"
@@ -59,14 +62,14 @@ runs:
           exit 1
         fi
 
-        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
+        if [[ "$VERSION" == "nightly-latest" ]]; then
           tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
-          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
+        elif [[ "$VERSION" == *"nightly"* ]]; then
+          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == *"stable"* ]]; then
-          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
+        elif [[ "$VERSION" == *"stable"* ]]; then
+          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"

.github/actions/release-branches/action.yml

@@ -18,8 +18,11 @@ runs:
   using: "composite"
   steps:
     - id: branches
+      env:
+        MAJOR_VERSION: ${{ inputs.major_version }}
+        LATEST_TAG: ${{ inputs.latest_tag }}
       run: |
         python ${{ github.action_path }}/release-branches.py \
-            --major-version ${{ inputs.major_version }} \
-            --latest-tag ${{ inputs.latest_tag }}
+            --major-version "$MAJOR_VERSION" \
+            --latest-tag "$LATEST_TAG"
       shell: bash

.github/codeql/codeql-actions-config.yml

@@ -0,0 +1,4 @@
+# Configuration for the CodeQL Actions Queries
+name: "CodeQL Actions Queries config"
+queries:
+  - uses: security-and-quality

.github/copilot-instructions.md

@@ -0,0 +1,5 @@
+# CodeQL Action - Copilot Instructions
+
+The CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from.
+
+GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that starts with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.

.github/dependabot.yml

@@ -2,8 +2,6 @@ version: 2
 updates:
   - package-ecosystem: npm
     directory: "/"
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     labels:
@@ -26,8 +24,6 @@ updates:
           - "*"
   - package-ecosystem: github-actions
     directory: "/"
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     groups:
@@ -36,8 +32,6 @@ updates:
           - "*"
   - package-ecosystem: github-actions
     directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
-    reviewers:
-      - "github/codeql-production-shield"
     schedule:
       interval: weekly
     groups:

.github/pull_request_template.md

@@ -1,5 +1,14 @@
+
+
+### Risk assessment
+
+For internal use only. Please select the risk level of this change:
+
+- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
+- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
+
 ### Merge / deployment checklist
 
-- [ ] Confirm this change is backwards compatible with existing workflows.
-- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
-- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.
+- Confirm this change is backwards compatible with existing workflows.
+- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
+- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.

.github/releases.ini

@@ -1 +1 @@
-OLDEST_SUPPORTED_MAJOR_VERSION=2
+OLDEST_SUPPORTED_MAJOR_VERSION=3

.github/workflows/__all-platform-bundle.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - All-platform bundle
@@ -32,15 +32,10 @@ jobs:
     name: All-platform bundle
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'true'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - id: init
         uses: ./../action/init
         with:

.github/workflows/__analyze-ref-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
@@ -36,15 +36,10 @@ jobs:
     name: "Analyze: 'ref' and 'sha' from inputs"
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -54,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__autobuild-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - autobuild-action
@@ -36,15 +36,10 @@ jobs:
     name: autobuild-action
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild direct tracing (custom working directory)
@@ -38,15 +38,10 @@ jobs:
     name: Autobuild direct tracing (custom working directory)
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__autobuild-direct-tracing.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild direct tracing
@@ -38,15 +38,10 @@ jobs:
     name: Autobuild direct tracing
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__build-mode-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode autobuild
@@ -32,15 +32,10 @@ jobs:
     name: Build mode autobuild
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__build-mode-manual.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode manual
@@ -32,15 +32,10 @@ jobs:
     name: Build mode manual
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__build-mode-none.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode none
@@ -34,15 +34,10 @@ jobs:
     name: Build mode none
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__build-mode-rollback.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Build mode rollback
@@ -32,15 +32,10 @@ jobs:
     name: Build mode rollback
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__bundle-toolcache.yml

@@ -0,0 +1,95 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Caching checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  bundle-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Caching checks'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -0,0 +1,112 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Bundle: Zstandard checks'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  bundle-zstd:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: 'Bundle: Zstandard checks'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Clean up database cluster directory
@@ -32,15 +32,10 @@ jobs:
     name: Clean up database cluster directory
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__config-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Config export
@@ -42,15 +42,10 @@ jobs:
     name: Config export
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__config-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Config input
@@ -32,15 +32,10 @@ jobs:
     name: Config input
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__cpp-deptrace-disabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
@@ -36,15 +36,10 @@ jobs:
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
@@ -27,20 +27,17 @@ jobs:
       fail-fast: false
       matrix:
         include:
+          - os: macos-latest
+            version: linked
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__cpp-deptrace-enabled.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
@@ -36,15 +36,10 @@ jobs:
     name: 'C/C++: autoinstalling dependencies (Linux)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__diagnostics-export.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Diagnostic export
@@ -42,15 +42,10 @@ jobs:
     name: Diagnostic export
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__export-file-baseline-information.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Export file baseline information
@@ -36,15 +36,10 @@ jobs:
     name: Export file baseline information
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -54,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__extract-direct-to-toolcache.yml

@@ -1,101 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Extract directly to toolcache
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  extract-direct-to-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Extract directly to toolcache
-    permissions:
-      contents: read
-      security-events: write
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            fs.rmdirSync(codeqlPath, { recursive: true });
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache
-      - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length !== 0) {
-              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
-            }
-            console.log('No versions of CodeQL found in the toolcache');
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-            if (allCodeqlVersions.length > 1) {
-              throw new Error('Multiple CodeQL versions found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_EXTRACT_TOOLCACHE: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test
@@ -32,15 +32,10 @@ jobs:
     name: Extractor ram and threads options test
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__go-custom-queries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
@@ -34,15 +34,10 @@ jobs:
     name: 'Go: Custom queries'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -52,9 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when Go is changed after init step'
@@ -32,15 +32,10 @@ jobs:
     name: 'Go: diagnostic when Go is changed after init step'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when `file` is not installed'
@@ -32,15 +32,10 @@ jobs:
     name: 'Go: diagnostic when `file` is not installed'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - name: Remove `file` program
         run: |
           echo $(which file)

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: workaround for indirect tracing'
@@ -32,15 +32,10 @@ jobs:
     name: 'Go: workaround for indirect tracing'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,10 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-      # We need a Go version that ships with statically linked binaries on Linux
           go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           languages: go

.github/workflows/__go-tracing-autobuilder.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with autobuilder step'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -62,15 +62,10 @@ jobs:
     name: 'Go: tracing with autobuilder step'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -80,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.23.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with custom build steps'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -62,15 +62,10 @@ jobs:
     name: 'Go: tracing with custom build steps'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -80,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.23.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with legacy workflow'
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.16.6
-          - os: macos-latest
-            version: stable-v2.16.6
           - os: ubuntu-latest
             version: stable-v2.17.6
           - os: macos-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: macos-latest
             version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.21.4
+          - os: macos-latest
+            version: stable-v2.21.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -62,15 +62,10 @@ jobs:
     name: 'Go: tracing with legacy workflow'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -80,11 +75,10 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
-          go-version: ~1.23.0
-      # to avoid potentially misleading autobuilder results where we expect it to download
-      # dependencies successfully, but they actually come from a warm cache
+          go-version: '>=1.21.0'
           cache: false
       - uses: ./../action/init
         with:

.github/workflows/__init-with-registries.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'
@@ -53,11 +53,6 @@ jobs:
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__javascript-source-root.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Custom source root
@@ -36,15 +36,10 @@ jobs:
     name: Custom source root
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__job-run-uuid-sarif.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Job run UUID added to SARIF
@@ -32,15 +32,10 @@ jobs:
     name: Job run UUID added to SARIF
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__language-aliases.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Language aliases
@@ -32,15 +32,10 @@ jobs:
     name: Language aliases
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__multi-language-autodetect.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
@@ -27,14 +27,6 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: macos-latest
-            version: stable-v2.15.5
-          - os: ubuntu-latest
-            version: stable-v2.15.5
-          - os: macos-latest
-            version: stable-v2.16.6
-          - os: ubuntu-latest
-            version: stable-v2.16.6
           - os: macos-latest
             version: stable-v2.17.6
           - os: ubuntu-latest
@@ -47,6 +39,14 @@ jobs:
             version: stable-v2.19.4
           - os: ubuntu-latest
             version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.20.7
+          - os: ubuntu-latest
+            version: stable-v2.20.7
+          - os: macos-latest
+            version: stable-v2.21.4
+          - os: ubuntu-latest
+            version: stable-v2.21.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -62,15 +62,10 @@ jobs:
     name: Multi-language repository
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -80,10 +75,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - uses: actions/setup-go@v5
+      - name: Install Go
+        uses: actions/setup-go@v5
         with:
           go-version: '>=1.21.0'
-
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__overlay-init-fallback.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Overlay database init fallback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  overlay-init-fallback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Overlay database init fallback
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: actions # Any language without overlay support will do
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases/actions"
+          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
+            echo "This test needs to be updated to use a non-overlay language."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
@@ -48,15 +48,10 @@ jobs:
     name: 'Packaging: Config and input passed to the CLI'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -66,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
@@ -48,15 +48,10 @@ jobs:
     name: 'Packaging: Config and input'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -66,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__packaging-config-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
@@ -48,15 +48,10 @@ jobs:
     name: 'Packaging: Config file'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -66,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging.yml

.github/workflows/__packaging-inputs-js.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
@@ -48,15 +48,10 @@ jobs:
     name: 'Packaging: Action input'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -66,6 +61,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging2.yml

.github/workflows/__quality-queries.yml

@@ -0,0 +1,117 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Quality queries input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  quality-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Quality queries input
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          quality-queries: code-quality
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload security SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Upload quality SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.quality.sarif.json
+          path: ${{ runner.temp }}/results/javascript.quality.sarif
+          retention-days: 7
+      - name: Check quality query does not appear in security SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+          EXPECT_PRESENT: 'false'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+      - name: Check quality query appears in quality SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
+          EXPECT_PRESENT: 'true'
+        with:
+          script: ${{ env.CHECK_SCRIPT }}
+    env:
+      CHECK_SCRIPT: |
+        const fs = require('fs');
+
+        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
+        const run = sarif.runs[0];
+        const extensions = run.tool.extensions;
+
+        if (extensions === undefined) {
+          core.setFailed('`extensions` property not found in the SARIF run property bag.');
+        }
+
+        // ID of a query we want to check the presence for
+        const targetId = 'js/regex/always-matches';
+        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
+
+        if (found && expectPresent) {
+          console.log(`Found rule with id '${targetId}'.`);
+        } else if (!found && !expectPresent) {
+          console.log(`Rule with id '${targetId}' was not found.`);
+        } else {
+          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
+        }
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Remote config file
@@ -34,15 +34,10 @@ jobs:
     name: Remote config file
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -52,6 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__resolve-environment-action.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Resolve environment
@@ -48,15 +48,10 @@ jobs:
     name: Resolve environment
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__rubocop-multi-language.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
@@ -32,15 +32,10 @@ jobs:
     name: RuboCop multi-language
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -51,7 +46,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@v1
+        uses: ruby/setup-ruby@2a7b30092b0caf9c046252510f9273b4875f3db9 # v1.254.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration

.github/workflows/__ruby.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Ruby analysis
@@ -42,15 +42,10 @@ jobs:
     name: Ruby analysis
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__rust.yml

@@ -0,0 +1,73 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Rust analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  rust:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.19.3
+          - os: ubuntu-latest
+            version: stable-v2.22.1
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Rust analysis
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: rust
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
+          if [[ ! -d "$RUST_DB" ]]; then
+            echo "Did not create a database for Rust."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Split workflow
@@ -42,15 +42,10 @@ jobs:
     name: Split workflow
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -60,6 +55,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           config-file: .github/codeql/codeql-config-packaging3.yml

.github/workflows/__start-proxy.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Start proxy
@@ -36,15 +36,10 @@ jobs:
     name: Start proxy
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__submit-sarif-failure.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Submit SARIF after failure
@@ -36,15 +36,11 @@ jobs:
     name: Submit SARIF after failure
     permissions:
       contents: read
-      security-events: write
+      security-events: write # needed to upload the SARIF file
+
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__swift-autobuild.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Swift analysis using autobuild
@@ -32,15 +32,10 @@ jobs:
     name: Swift analysis using autobuild
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__swift-custom-build.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Swift analysis using a custom build command
@@ -36,15 +36,10 @@ jobs:
     name: Swift analysis using a custom build command
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -54,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:

.github/workflows/__test-autobuild-working-dir.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Autobuild working directory
@@ -32,15 +32,10 @@ jobs:
     name: Autobuild working directory
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__test-local-codeql.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Local CodeQL bundle
@@ -32,15 +32,10 @@ jobs:
     name: Local CodeQL bundle
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -50,6 +45,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - name: Fetch a CodeQL bundle
         shell: bash
         env:

.github/workflows/__test-proxy.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Proxy test
@@ -34,7 +34,7 @@ jobs:
     name: Proxy test
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
@@ -50,11 +50,6 @@ jobs:
           apt-add-repository https://cli.github.com/packages
           apt install -y gh
         env: {}
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test

.github/workflows/__unset-environment.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Test unsetting environment variables
@@ -34,15 +34,10 @@ jobs:
     name: Test unsetting environment variables
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -52,6 +47,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         id: init
         with:
@@ -59,9 +59,6 @@ jobs:
       # Swift is not supported on Ubuntu so we manually exclude it from the list here
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: actions/setup-go@v5
-        with:
-          go-version: '>=1.21.0'
       - name: Build code
         shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh

.github/workflows/__upload-quality-sarif.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Upload-sarif: code quality endpoint'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-quality-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+    name: 'Upload-sarif: code quality endpoint'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+          quality-queries: code-quality
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
@@ -36,15 +36,10 @@ jobs:
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -54,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}

.github/workflows/__with-checkout-path.yml

@@ -1,6 +1,6 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+#     pr-checks/sync.sh
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
@@ -36,15 +36,10 @@ jobs:
     name: Use a custom `checkout_path`
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
       - name: Check out repository
         uses: actions/checkout@v4
       - name: Prepare test
@@ -54,6 +49,11 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+          cache: false
       - name: Delete original checkout
         shell: bash
         run: |

.github/workflows/__zstd-bundle-streaming.yml

@@ -1,115 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Zstandard bundle (streaming)
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  zstd-bundle-streaming:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-    name: Zstandard bundle (streaming)
-    permissions:
-      contents: read
-      security-events: write
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v4
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v7
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            if (!toolsUrl.endsWith('.tar.zst')) {
-              core.setFailed(
-                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_ZSTD_BUNDLE: true
-      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle.yml

@@ -1,118 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Zstandard bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  zstd-bundle:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: linked
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Zstandard bundle
-    permissions:
-      contents: read
-      security-events: write
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Setup Python on macOS
-        uses: actions/setup-python@v5
-        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
-        with:
-          python-version: '3.11'
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v7
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v4
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v7
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
-
-            if (!toolsUrl.endsWith(expectedExtension)) {
-              core.setFailed(
-                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_ZSTD_BUNDLE: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/check-expected-release-files.yml

@@ -13,6 +13,9 @@ jobs:
   check-expected-release-files:
     runs-on: ubuntu-latest
 
+    permissions:
+      contents: read
+
     steps:
       - name: Checkout CodeQL Action
         uses: actions/checkout@v4

.github/workflows/codeql.yml

@@ -24,7 +24,7 @@ jobs:
       versions: ${{ steps.compare.outputs.versions }}
 
     permissions:
-      security-events: write
+      contents: read
 
     steps:
     - uses: actions/checkout@v4
@@ -70,16 +70,17 @@ jobs:
         echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
-  build:
+  analyze-javascript:
     needs: [check-codeql-versions]
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-13,macos-14]
+        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-13,macos-14,macos-15]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
     permissions:
+      contents: read
       security-events: write
 
     steps:
@@ -99,3 +100,27 @@ jobs:
       uses: ./analyze
       with:
         category: "/language:javascript"
+
+
+  analyze-actions:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+
+    permissions:
+      contents: read
+      security-events: write
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+    - name: Initialize CodeQL
+      uses: ./init
+      with:
+        languages: actions
+        config-file: ./.github/codeql/codeql-actions-config.yml
+    - name: Perform CodeQL Analysis
+      uses: ./analyze
+      with:
+        category: "/language:actions"

.github/workflows/codescanning-config-cli.yml

@@ -3,6 +3,9 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  # Diff informed queries add an additional query filter which is not yet
+  # taken into account by these tests.
+  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
 
 on:
   push:
@@ -23,6 +26,11 @@ jobs:
   code-scanning-config-tests:
     continue-on-error: true
 
+    permissions:
+      contents: read
+      packages: read
+      security-events: read
+
     strategy:
       fail-fast: false
       matrix:

.github/workflows/debug-artifacts-failure-safe.yml

@@ -0,0 +1,102 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    permissions:
+      contents: read
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        env:
+          # Forces a failure in this step.
+          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
+        with:
+          expect-error: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            echo "Artifacts from version $version:"
+            pushd "./my-debug-artifacts-${version//./}"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+                echo "Missing a partial database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "log" ]] ; then
+                echo "Missing database initialization logs"
+                exit 1
+              fi
+              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts-failure.yml

@@ -1,87 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist
-# when the analyze step fails.
-name: PR Check - Debug artifacts after failure
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    name: Upload debug artifacts after failure in analyze
-    continue-on-error: true
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Dump GitHub event
-        run: cat "${GITHUB_EVENT_PATH}"
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: linked
-      - uses: actions/setup-go@v5
-        with:
-          go-version: ^1.13.1
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        env:
-          # Forces a failure in this step.
-          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
-        with:
-          expect-error: true
-  download-and-check-artifacts:
-    name: Download and check debug artifacts after failure in analyze
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v4
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          LANGUAGES="cpp csharp go java javascript python"
-          cd "./my-debug-artifacts"
-          echo "Artifacts from run:"
-          for language in $LANGUAGES; do
-            echo "- Checking $language"
-            if [[ ! -f "my-db-$language-partial.zip" ]] ; then
-              echo "Missing a partial database bundle for $language"
-              exit 1
-            fi
-            if [[ ! -d "log" ]] ; then
-              echo "Missing database initialization logs"
-              exit 1
-            fi
-            if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
-              echo "Missing logs for $language"
-              exit 1
-            fi
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts-safe.yml

@@ -0,0 +1,97 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-v2.20.3 default linked nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -1,97 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist.
-name: PR Check - Debug artifact upload
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-        - stable-v2.15.5
-        - stable-v2.16.6
-        - stable-v2.17.6
-        - stable-v2.18.4
-        - stable-v2.19.4
-        - default
-        - linked
-        - nightly-latest
-    name: Upload debug artifacts
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@v5
-        with:
-          go-version: ^1.13.1
-      - uses: ./../action/init
-        id: init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
-          languages: cpp,csharp,go,java,javascript,python,ruby
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-  download-and-check-artifacts:
-    name: Download and check debug artifacts
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v4
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          VERSIONS="stable-v2.15.5 stable-v2.16.6 stable-v2.17.6 stable-v2.18.4 stable-v2.19.4 default linked nightly-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            pushd "./my-debug-artifacts-${version//./}"
-            echo "Artifacts from version $version:"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "$language.sarif" ]] ; then
-                echo "Missing a SARIF file for $language"
-                exit 1
-              fi
-              if [[ ! -f "my-db-$language.zip" ]] ; then
-                echo "Missing a database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/expected-queries-runs.yml

@@ -24,7 +24,7 @@ jobs:
     runs-on: ubuntu-latest
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     steps:
     - name: Check out repository
       uses: actions/checkout@v4

.github/workflows/post-release-mergeback.yml

@@ -27,6 +27,10 @@ jobs:
       BASE_BRANCH: "${{ github.event.inputs.baseBranch || 'main' }}"
       HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
 
+    permissions:
+      contents: write # needed to create tags and push commits
+      pull-requests: write
+
     steps:
       - name: Dump environment
         run: env
@@ -164,7 +168,7 @@ jobs:
             --draft
 
       - name: Generate token
-        uses: actions/create-github-app-token@c1a285145b9d317df6ced56c09f525b5c2b6f755
+        uses: actions/create-github-app-token@v2.0.6
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}

.github/workflows/pr-checks.yml

@@ -15,12 +15,10 @@ jobs:
     timeout-minutes: 45
     permissions:
       contents: read
-      security-events: write
+      security-events: write # needed to upload ESLint results
 
     strategy:
       fail-fast: false
-      matrix:
-        node-types-version: [16.11, current] # run tests on 16.11 while CodeQL Action v2 is still supported
 
     steps:
       - name: Checkout
@@ -32,40 +30,18 @@ jobs:
 
       - name: Upload sarif
         uses: github/codeql-action/upload-sarif@v3
-        # Only upload SARIF for the latest version of Node.js
-        if: "!cancelled() && matrix.node-types-version == 'current' && !startsWith(github.head_ref, 'dependabot/')"
         with:
           sarif_file: eslint.sarif
           category: eslint
 
-      - name: Update version of @types/node
-        if: matrix.node-types-version != 'current'
-        env:
-          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
-        run: |
-          # Export `NODE_TYPES_VERSION` so it's available to jq
-          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
-          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
-          echo "${contents}" > package.json
-          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
-          # However we're not checking in the updated lockfile here, so it's fine to run
-          # `npm install` on Linux.
-          npm install
-
-          if [ ! -z "$(git status --porcelain)" ]; then
-            git config --global user.email "github-actions@github.com"
-            git config --global user.name "github-actions[bot]"
-            # The period in `git add --all .` ensures that we stage deleted files too.
-            git add --all .
-            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
-          fi
-
       - name: Check generated JS
         run: .github/workflows/script/check-js.sh
 
   check-node-modules:
     if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check modules up to date
+    permissions:
+      contents: read
     runs-on: macos-latest
     timeout-minutes: 45
 
@@ -77,6 +53,8 @@ jobs:
   check-file-contents:
     if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check file contents
+    permissions:
+      contents: read
     runs-on: ubuntu-latest
     timeout-minutes: 45
 
@@ -89,12 +67,6 @@ jobs:
         with:
           python-version: 3.11
 
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          # When updating this, update the autogenerated code header in `sync.py` too.
-          pip install ruamel.yaml==0.17.31
-
       # Ensure the generated PR check workflows are up to date.
       - name: Verify PR checks up to date
         run: .github/workflows/script/verify-pr-checks.sh
@@ -107,6 +79,8 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
+    permissions:
+      contents: read
     runs-on: ${{ matrix.os }}
     timeout-minutes: 45
 
@@ -127,6 +101,9 @@ jobs:
     env:
       BASE_REF: ${{ github.base_ref }}
 
+    permissions:
+      contents: read
+
     steps:
       - uses: actions/checkout@v4
       - id: head-version

.github/workflows/python312-windows.yml

@@ -17,6 +17,8 @@ jobs:
     env:
       CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
+    permissions:
+      contents: read
     runs-on: windows-latest
 
     steps:

.github/workflows/query-filters.yml

@@ -20,6 +20,8 @@ jobs:
     name: Query Filters Tests
     timeout-minutes: 45
     runs-on: ubuntu-latest
+    permissions:
+      contents: read # This permission is needed to allow the GitHub Actions workflow to read the contents of the repository.
     steps:
     - name: Check out repository
       uses: actions/checkout@v4

.github/workflows/rebuild.yml

@@ -9,15 +9,20 @@ jobs:
   rebuild:
     name: Rebuild Action
     runs-on: ubuntu-latest
-    if: github.event.label.name == 'Rebuild'
+    if: github.event.label.name == 'Rebuild' || github.event_name == 'workflow_dispatch'
 
+    permissions:
+      contents: write # needed to push rebuilt commit
+      pull-requests: write # needed to comment on the PR
     steps:
       - name: Checkout
         uses: actions/checkout@v4
         with:
-          ref: ${{ github.event.pull_request.head.ref }}
+          fetch-depth: 0
+          ref: ${{ github.event.pull_request.head.ref || github.event.ref }}
 
       - name: Remove label
+        if: github.event_name == 'pull_request'
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
@@ -25,21 +30,35 @@ jobs:
           gh pr edit --repo github/codeql-action "$PR_NUMBER" \
             --remove-label "Rebuild"
 
+      - name: Configure git
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
       - name: Merge in changes from base branch
+        id: merge
         env:
-          BASE_BRANCH: ${{ github.event.pull_request.base.ref }}
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
         run: |
           git fetch origin "$BASE_BRANCH"
 
           # Allow merge conflicts in `lib`, since rebuilding should resolve them.
-          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected"
+          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected, continuing."
+          MERGE_RESULT=$?
 
-          # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
-          # since `node_modules/@types/semver/README.md` fails it.
-          if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
-            echo "Merge conflicts detected outside of lib/ directory. Please resolve them manually."
-            git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
-            exit 1
+          if [ "$MERGE_RESULT" -ne 0 ]; then
+            echo "merge-in-progress=true" >> $GITHUB_OUTPUT
+
+            # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
+            # since `node_modules/@types/semver/README.md` fails it.
+            if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
+              echo "Merge conflicts were detected outside of the lib directory. Please resolve them manually."
+              git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
+              exit 1
+            fi
+
+            echo "No merge conflicts found outside the lib directory. We should be able to resolve all of" \
+              "these by rebuilding the Action."
           fi
 
       - name: Compile TypeScript
@@ -60,20 +79,49 @@ jobs:
           pip install ruamel.yaml==0.17.31
           python3 sync.py
 
-      - name: Check for changes and push
+      - name: "Merge in progress: Finish merge and push"
+        if: steps.merge.outputs.merge-in-progress == 'true'
+        run: |
+          echo "Finishing merge and pushing changes."
+          git add --all
+          git commit --no-edit
+          git push
+
+      - name: "No merge in progress: Check for changes and push"
+        if: steps.merge.outputs.merge-in-progress != 'true'
+        id: push
+        run: |
+          if [ ! -z "$(git status --porcelain)" ]; then
+            echo "Changes detected, committing and pushing."
+            git add --all
+            # If the merge originally had conflicts, finish the merge.
+            # Otherwise, just commit the changes.
+            if git rev-parse --verify MERGE_HEAD >/dev/null 2>&1; then
+              echo "In progress merge detected, finishing it up."
+              git merge --continue
+            else
+              echo "No in-progress merge detected, committing changes."
+              git commit -m "Rebuild"
+            fi
+            echo "Pushing changes"
+            git push
+            echo "changes=true" >> $GITHUB_OUTPUT
+          else
+            echo "No changes detected, nothing to commit."
+          fi
+
+      - name: Notify about rebuild
+        if: >-
+          github.event_name == 'pull_request' &&
+            (
+              steps.merge.outputs.merge-in-progress == 'true' ||
+              steps.push.outputs.changes == 'true'
+            )
         env:
-          BRANCH: ${{ github.event.pull_request.head.ref }}
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_NUMBER: ${{ github.event.pull_request.number }}
         run: |
-          if [ ! -z "$(git status --porcelain)" ]; then
-            git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
-            git config --global user.name "github-actions[bot]"
-            git add --all
-            git commit -m "Rebuild"
-            git push origin "HEAD:$BRANCH"
-            echo "Pushed a commit to rebuild the Action." \
-              "Please mark the PR as ready for review to trigger PR checks." |
-              gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
-            gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"
-          fi
+          echo "Pushed a commit to rebuild the Action." \
+            "Please mark the PR as ready for review to trigger PR checks." |
+            gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
+          gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"

.github/workflows/script/verify-pr-checks.sh

@@ -12,7 +12,7 @@ fi
 rm -rf .github/workflows/__*
 
 # Generate the PR checks
-cd pr-checks && python3 sync.py
+pr-checks/sync.sh
 
 # Check that repo is still clean
 if [ ! -z "$(git status --porcelain)" ]; then

.github/workflows/test-codeql-bundle-all.yml

@@ -27,7 +27,7 @@ jobs:
     name: 'CodeQL Bundle All'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:

.github/workflows/update-bundle.yml

@@ -17,6 +17,9 @@ jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
     runs-on: ubuntu-latest
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull requests
     steps:
       - name: Dump environment
         run: env

.github/workflows/update-dependencies.yml

@@ -9,6 +9,9 @@ jobs:
     timeout-minutes: 45
     runs-on: macos-latest
     if: contains(github.event.pull_request.labels.*.name, 'Update dependencies') && (github.event.pull_request.head.repo.full_name == 'github/codeql-action')
+    permissions:
+      contents: write # needed to push the updated dependencies
+      pull-requests: write # needed to comment on the PR
     steps:
     - name: Checkout repository
       uses: actions/checkout@v4

.github/workflows/update-proxy-release.yml

@@ -0,0 +1,101 @@
+name: Update dependency proxy release assets
+on:
+  workflow_dispatch:
+    inputs:
+      tag:
+        description: "The tag of CodeQL Bundle release that contains the proxy binaries as release assets"
+        type: string
+        required: true
+
+jobs:
+  update:
+    name: Update code and create PR
+    timeout-minutes: 15
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write # needed to push the updated files
+      pull-requests: write # needed to create the PR
+    env:
+      RELEASE_TAG: ${{ inputs.tag }}
+    steps:
+      - name: Check release tag format
+        id: checks
+        shell: bash
+        run: |
+          if ! [[ $RELEASE_TAG =~ ^codeql-bundle-v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
+            echo "Invalid release tag: expected a CodeQL bundle tag in the 'codeql-bundle-vM.N.P' format."
+            exit 1
+          fi
+
+          echo "target_branch=dependency-proxy/$RELEASE_TAG" >> $GITHUB_OUTPUT
+
+      - name: Check that the release exists
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+        run: |
+          (gh release view --repo "$GITHUB_REPOSITORY" --json "assets" "$RELEASE_TAG" && echo "Release found.") || exit 1
+
+      - name: Install Node
+        uses: actions/setup-node@v4
+
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0  # ensure we have all tags and can push commits
+          ref: main
+
+      - name: Update git config
+        shell: bash
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Update release tag and version
+        shell: bash
+        run: |
+          NOW=$(date +"%Y%m%d%H%M%S") # only used to make sure we don't fetch stale binaries from the toolcache
+          sed -i "s|https://github.com/github/codeql-action/releases/download/codeql-bundle-v[0-9.]\+/|https://github.com/github/codeql-action/releases/download/$RELEASE_TAG/|g" ./src/start-proxy-action.ts
+          sed -i "s/\"v2.0.[0-9]\+\"/\"v2.0.$NOW\"/g" ./src/start-proxy-action.ts
+
+      - name: Compile TypeScript and commit changes
+        shell: bash
+        env:
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+        run: |
+          set -exu
+          git checkout -b "$TARGET_BRANCH"
+
+          npm run build
+          git add ./src/start-proxy-action.ts
+          git add ./lib
+          git commit -m "Update release used by \`start-proxy\` action"
+
+      - name: Push changes and open PR
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+          PR_FLAG: ${{ (github.event_name == 'workflow_dispatch' && '--draft') || '--dry-run' }}
+        run: |
+          set -exu
+          pr_title="Update release used by \`start-proxy\` to \`$RELEASE_TAG\`"
+          pr_body=$(cat << EOF
+            This PR updates the \`start-proxy\` action to use the private registry proxy binaries that
+            are attached as release assets to the \`$RELEASE_TAG\` release.
+
+
+            Please do the following before merging:
+
+            - [ ] Verify that the changes to the code are correct.
+            - [ ] Mark the PR as ready for review to trigger the CI.
+          EOF
+          )
+
+          git push origin "$TARGET_BRANCH"
+          gh pr create \
+            --head "$TARGET_BRANCH" \
+            --base "main" \
+            --title "${pr_title}" \
+            --body "${pr_body}" \
+            $PR_FLAG

.github/workflows/update-release-branch.yml

@@ -22,6 +22,8 @@ jobs:
       latest_tag: ${{ steps.versions.outputs.latest_tag }}
       backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
       backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
+    permissions:
+      contents: read
     steps:
     - uses: actions/checkout@v4
       with:
@@ -63,6 +65,9 @@ jobs:
       REPOSITORY: "${{ github.repository }}"
       MAJOR_VERSION: "${{ needs.prepare.outputs.major_version }}"
       LATEST_TAG: "${{ needs.prepare.outputs.latest_tag }}"
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
     steps:
     - uses: actions/checkout@v4
       with:
@@ -114,9 +119,12 @@ jobs:
     env:
       SOURCE_BRANCH: ${{ needs.prepare.outputs.backport_source_branch }}
       TARGET_BRANCH: ${{ matrix.target_branch }}
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
     steps:
     - name: Generate token
-      uses: actions/create-github-app-token@c1a285145b9d317df6ced56c09f525b5c2b6f755
+      uses: actions/create-github-app-token@v2.0.6
       id: app-token
       with:
         app-id: ${{ vars.AUTOMATION_APP_ID }}

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -10,20 +10,23 @@ jobs:
     name: Update Supported Enterprise Server Versions
     timeout-minutes: 45
     runs-on: ubuntu-latest
-    if: ${{ github.repository == 'github/codeql-action' }}
+    if: github.repository == 'github/codeql-action'
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
 
     steps:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.7"
+          python-version: "3.13"
       - name: Checkout CodeQL Action
         uses: actions/checkout@v4
       - name: Checkout Enterprise Releases
         uses: actions/checkout@v4
         with:
           repository: github/enterprise-releases
-          ssh-key: ${{ secrets.ENTERPRISE_RELEASES_SSH_KEY }}
+          token: ${{ secrets.ENTERPRISE_RELEASE_TOKEN }}
           path: ${{ github.workspace }}/enterprise-releases/
       - name: Update Supported Enterprise Server Versions
         run: |

.pre-commit-config.yaml

@@ -1,20 +1,20 @@
 repos:
   - repo: local
     hooks:
+      - id: lint-ts
+        name: Lint typescript code
+        files: \.ts$
+        language: system
+        entry: npm run lint -- --fix
       - id: compile-ts
         name: Compile typescript
         files: \.[tj]s$
         language: system
         entry: npm run build
         pass_filenames: false
-      - id: lint-ts
-        name: Lint typescript code
-        files: \.ts$
-        language: system
-        entry: npm run lint -- --fix
       - id: pr-checks-sync
         name: Synchronize PR check workflows
         files: ^.github/workflows/__.*\.yml$|^pr-checks
         language: system
-        entry: python3 pr-checks/sync.py
+        entry: pr-checks/sync.sh
         pass_filenames: false

CHANGELOG.md

@@ -2,6 +2,139 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
+## 3.29.9 - 12 Aug 2025
+
+No user facing changes.
+
+## 3.29.8 - 08 Aug 2025
+
+- Fix an issue where the Action would autodetect unsupported languages such as HTML. [#3015](https://github.com/github/codeql-action/pull/3015)
+
+## 3.29.7 - 07 Aug 2025
+
+This release rolls back 3.29.6 to address issues with language autodetection. It is identical to 3.29.5.
+
+## 3.29.6 - 07 Aug 2025
+
+- The `cleanup-level` input to the `analyze` Action is now deprecated. The CodeQL Action has written a limited amount of intermediate results to the database since version 2.2.5, and now automatically manages cleanup. [#2999](https://github.com/github/codeql-action/pull/2999)
+- Update default CodeQL bundle version to 2.22.3. [#3000](https://github.com/github/codeql-action/pull/3000)
+
+## 3.29.5 - 29 Jul 2025
+
+- Update default CodeQL bundle version to 2.22.2. [#2986](https://github.com/github/codeql-action/pull/2986)
+
+## 3.29.4 - 23 Jul 2025
+
+No user facing changes.
+
+## 3.29.3 - 21 Jul 2025
+
+No user facing changes.
+
+## 3.29.2 - 30 Jun 2025
+
+- Experimental: When the `quality-queries` input for the `init` action is provided with an argument, separate `.quality.sarif` files are produced and uploaded for each language with the results of the specified queries. Do not use this in production as it is part of an internal experiment and subject to change at any time. [#2935](https://github.com/github/codeql-action/pull/2935)
+
+## 3.29.1 - 27 Jun 2025
+
+- Fix bug in PR analysis where user-provided `include` query filter fails to exclude non-included queries. [#2938](https://github.com/github/codeql-action/pull/2938)
+- Update default CodeQL bundle version to 2.22.1. [#2950](https://github.com/github/codeql-action/pull/2950)
+
+## 3.29.0 - 11 Jun 2025
+
+- Update default CodeQL bundle version to 2.22.0. [#2925](https://github.com/github/codeql-action/pull/2925)
+- Bump minimum CodeQL bundle version to 2.16.6. [#2912](https://github.com/github/codeql-action/pull/2912)
+
+## 3.28.21 - 28 July 2025
+
+No user facing changes.
+
+## 3.28.20 - 21 July 2025
+
+- Remove support for combining SARIF files from a single upload for GHES 3.18, see [the changelog post](https://github.blog/changelog/2024-05-06-code-scanning-will-stop-combining-runs-from-a-single-upload/). [#2959](https://github.com/github/codeql-action/pull/2959)
+
+## 3.28.19 - 03 Jun 2025
+
+- The CodeQL Action no longer includes its own copy of the extractor for the `actions` language, which is currently in public preview.
+  The `actions` extractor has been included in the CodeQL CLI since v2.20.6. If your workflow has enabled the `actions` language _and_ you have pinned
+  your `tools:` property to a specific version of the CodeQL CLI earlier than v2.20.6, you will need to update to at least CodeQL v2.20.6 or disable
+  `actions` analysis.
+- Update default CodeQL bundle version to 2.21.4. [#2910](https://github.com/github/codeql-action/pull/2910)
+
+## 3.28.18 - 16 May 2025
+
+- Update default CodeQL bundle version to 2.21.3. [#2893](https://github.com/github/codeql-action/pull/2893)
+- Skip validating SARIF produced by CodeQL for improved performance. [#2894](https://github.com/github/codeql-action/pull/2894)
+- The number of threads and amount of RAM used by CodeQL can now be set via the `CODEQL_THREADS` and `CODEQL_RAM` runner environment variables. If set, these environment variables override the `threads` and `ram` inputs respectively. [#2891](https://github.com/github/codeql-action/pull/2891)
+
+## 3.28.17 - 02 May 2025
+
+- Update default CodeQL bundle version to 2.21.2. [#2872](https://github.com/github/codeql-action/pull/2872)
+
+## 3.28.16 - 23 Apr 2025
+
+- Update default CodeQL bundle version to 2.21.1. [#2863](https://github.com/github/codeql-action/pull/2863)
+
+## 3.28.15 - 07 Apr 2025
+
+- Fix bug where the action would fail if it tried to produce a debug artifact with more than 65535 files. [#2842](https://github.com/github/codeql-action/pull/2842)
+
+## 3.28.14 - 07 Apr 2025
+
+- Update default CodeQL bundle version to 2.21.0. [#2838](https://github.com/github/codeql-action/pull/2838)
+
+## 3.28.13 - 24 Mar 2025
+
+No user facing changes.
+
+## 3.28.12 - 19 Mar 2025
+
+- Dependency caching should now cache more dependencies for Java `build-mode: none` extractions. This should speed up workflows and avoid inconsistent alerts in some cases.
+- Update default CodeQL bundle version to 2.20.7. [#2810](https://github.com/github/codeql-action/pull/2810)
+
+## 3.28.11 - 07 Mar 2025
+
+- Update default CodeQL bundle version to 2.20.6. [#2793](https://github.com/github/codeql-action/pull/2793)
+
+## 3.28.10 - 21 Feb 2025
+
+- Update default CodeQL bundle version to 2.20.5. [#2772](https://github.com/github/codeql-action/pull/2772)
+- Address an issue where the CodeQL Bundle would occasionally fail to decompress on macOS. [#2768](https://github.com/github/codeql-action/pull/2768)
+
+## 3.28.9 - 07 Feb 2025
+
+- Update default CodeQL bundle version to 2.20.4. [#2753](https://github.com/github/codeql-action/pull/2753)
+
+## 3.28.8 - 29 Jan 2025
+
+- Enable support for Kotlin 2.1.10 when running with CodeQL CLI v2.20.3. [#2744](https://github.com/github/codeql-action/pull/2744)
+
+## 3.28.7 - 29 Jan 2025
+
+No user facing changes.
+
+## 3.28.6 - 27 Jan 2025
+
+- Re-enable debug artifact upload for CLI versions 2.20.3 or greater. [#2726](https://github.com/github/codeql-action/pull/2726)
+
+## 3.28.5 - 24 Jan 2025
+
+- Update default CodeQL bundle version to 2.20.3. [#2717](https://github.com/github/codeql-action/pull/2717)
+
+## 3.28.4 - 23 Jan 2025
+
+No user facing changes.
+
+## 3.28.3 - 22 Jan 2025
+
+- Update default CodeQL bundle version to 2.20.2. [#2707](https://github.com/github/codeql-action/pull/2707)
+- Fix an issue downloading the CodeQL Bundle from a GitHub Enterprise Server instance which occurred when the CodeQL Bundle had been synced to the instance using the [CodeQL Action sync tool](https://github.com/github/codeql-action-sync-tool) and the Actions runner did not have Zstandard installed. [#2710](https://github.com/github/codeql-action/pull/2710)
+- Uploading debug artifacts for CodeQL analysis is temporarily disabled. [#2712](https://github.com/github/codeql-action/pull/2712)
+
+## 3.28.2 - 21 Jan 2025
+
+No user facing changes.
+
 ## 3.28.1 - 10 Jan 2025
 
 - CodeQL Action v2 is now deprecated, and is no longer updated or supported. For better performance, improved security, and new features, upgrade to v3. For more information, see [this changelog post](https://github.blog/changelog/2025-01-10-code-scanning-codeql-action-v2-is-now-deprecated/). [#2677](https://github.com/github/codeql-action/pull/2677)
@@ -72,7 +205,7 @@ No user facing changes.
 
 - _Upcoming breaking change_: Add support for using `actions/download-artifact@v4` to programmatically consume CodeQL Action debug artifacts.
 
-  Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped to `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
+  Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
 
   This change is currently unavailable for GitHub Enterprise Server customers, as `actions/upload-artifact@v4` and `actions/download-artifact@v4` are not yet compatible with GHES.
 - Update default CodeQL bundle version to 2.19.1. [#2519](https://github.com/github/codeql-action/pull/2519)

CONTRIBUTING.md

@@ -27,7 +27,7 @@ You may want to run `tsc --watch` from the command line or inside of vscode in o
 
 ### Checking in compiled artifacts and `node_modules`
 
-Because CodeQL Action users consume the code directly from this repository, and there can be no build step during an GitHub Actions run, this repository contains all compiled artifacts and node modules. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
+Because CodeQL Action users consume the code directly from this repository, and there can be no build step during a GitHub Actions run, this repository contains all compiled artifacts and node modules. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
 
 Only run `npm install` if you are explicitly changing the set of dependencies in `package.json`. The `node_modules` directory should be up to date when you check out, but if for some reason, there is an inconsistency use `npm ci && npm run removeNPMAbsolutePaths` to ensure the directory is in a state consistent with the `package-lock.json`. Note that due to a macOS-specific dependency, this command should be run on a macOS machine. There is a PR check to ensure the consistency of the `node_modules` directory.
 
@@ -63,7 +63,7 @@ Here are a few things you can do that will increase the likelihood of your pull
     You can start a release by triggering this workflow via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
 1. The workflow run will open a pull request titled "Merge main into releases/v3". Follow the steps on the checklist in the pull request. Once you've checked off all but the last two of these, approve the PR and automerge it.
 1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action. 
-1. If a backport to an older major version is required, a pull request targeting that version's branch will also be automatically created
+1. If a backport to an older major version is required, a pull request targeting that version's branch will also be automatically created.
 1. Approve the mergeback and backport pull request (if applicable) and automerge them.
 
 Once the mergeback and backport pull request have been merged, the release is complete.
@@ -109,6 +109,7 @@ To add a new major version of the Action:
 1. Change the `version` field of `package.json` by running `npm version x.y.z` where `x` is the new major version, and `y` and `z` match the latest minor and patch versions of the last release.
 1. Update appropriate documentation to explain the reasoning behind the releases: see [the diff](https://github.com/github/codeql-action/pull/2677/commits/913d60579d4b560addf53ec3c493d491dd3c1378) in our last major version deprecation for examples on which parts of the documentation should be updated.
 1. Consider the timeline behind deprecating the prior Action version: see [CodeQL Action deprecation documentation](#deprecating-a-codeql-action-major-version-write-access-required)
+1. If the new major version runs on a new version of Node, add a PR check to ensure the codebase continues to compile against the previous version of Node. See [Remove Node 16 compilation PR check](https://github.com/github/codeql-action/pull/2695) for an example.
 
 ## Deprecating a CodeQL Action major version (write access required)
 

README.md

@@ -55,7 +55,7 @@ For compiled languages:
 
 - `manual` build mode will typically produce the most precise results, but it is more difficult to set up and will cause the analysis to take slightly more time to run.
 - `autobuild` build mode is simpler to set up, but will only work for projects with generic build steps that can be guessed by the heuristics of the autobuild scripts. If `autobuild` fails, then you must switch to `manual` or `none`. If `autobuild` succeeds, then the results and run time will be the same as `manual` mode.
-- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by C/C++, Swift, Go, or Kotlin.
+- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by Swift, Go, or Kotlin. It is in public preview for C/C++.
 
 
 ## Supported versions of the CodeQL Action
@@ -70,10 +70,11 @@ We typically release new minor versions of the CodeQL Action and Bundle when a n
 
 | Minimum CodeQL Action | Minimum CodeQL Bundle Version | GitHub Environment | Notes |
 |-----------------------|-------------------------------|--------------------|-------|
-| `v3.26.6`  | `2.18.4` | Enterprise Server 3.15 | |
-| `v3.25.11` | `2.17.6` | Enterprise Server 3.14 | |
-| `v3.24.11` | `2.16.6` | Enterprise Server 3.13 | |
-| `v3.22.12` | `2.15.5` | Enterprise Server 3.12 | |
+| `v3.28.21`  | `2.21.3` | Enterprise Server 3.18 | |
+| `v3.28.12`  | `2.20.7` | Enterprise Server 3.17 | |
+| `v3.28.6`  | `2.20.3` | Enterprise Server 3.16 | |
+| `v3.28.6`  | `2.20.3` | Enterprise Server 3.15 | |
+| `v3.28.6` | `2.20.3` | Enterprise Server 3.14 | |
 
 See the full list of GHES release and deprecation dates at [GitHub Enterprise Server releases](https://docs.github.com/en/enterprise-server/admin/all-releases#releases-of-github-enterprise-server).
 

actions-extractor/codeql-extractor.yml

@@ -1,44 +0,0 @@
-name: "actions"
-aliases: []
-display_name: "GitHub Actions"
-version: 0.0.1
-column_kind: "utf16"
-unicode_newlines: true
-build_modes:
-  - none
-file_coverage_languages: []
-github_api_languages: []
-scc_languages: []
-file_types:
-  - name: workflow
-    display_name: GitHub Actions workflow files
-    extensions:
-      - .yml
-      - .yaml
-forwarded_extractor_name: javascript
-options:
-  trap:
-    title: TRAP options
-    description: Options about how the extractor handles TRAP files
-    type: object
-    visibility: 3
-    properties:
-      cache:
-        title: TRAP cache options
-        description: Options about how the extractor handles its TRAP cache
-        type: object
-        properties:
-          dir:
-            title: TRAP cache directory
-            description: The directory of the TRAP cache to use
-            type: string
-          bound:
-            title: TRAP cache bound
-            description: A soft limit (in MB) on the size of the TRAP cache
-            type: string
-            pattern: "[0-9]+"
-          write:
-            title: TRAP cache writeable
-            description: Whether to write to the TRAP cache as well as reading it
-            type: string
-            pattern: "(true|TRUE|false|FALSE)"

actions-extractor/tools/autobuild-impl.ps1

@@ -1,40 +0,0 @@
-if (($null -ne $env:LGTM_INDEX_INCLUDE) -or ($null -ne $env:LGTM_INDEX_EXCLUDE) -or ($null -ne $env:LGTM_INDEX_FILTERS)) {
-    Write-Output 'Path filters set. Passing them through to the JavaScript extractor.' 
-} else {
-    Write-Output 'No path filters set. Using the default filters.'
-    $DefaultPathFilters = @(
-        'exclude:**/*',
-        'include:.github/workflows/**/*.yml',
-        'include:.github/workflows/**/*.yaml',
-        'include:**/action.yml',
-        'include:**/action.yaml'
-    )
-
-    $env:LGTM_INDEX_FILTERS = $DefaultPathFilters -join "`n"
-}
-
-# Find the JavaScript extractor directory via `codeql resolve extractor`.
-$CodeQL = Join-Path $env:CODEQL_DIST 'codeql.exe'
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT = &$CodeQL resolve extractor --language javascript
-if ($LASTEXITCODE -ne 0) {
-    throw 'Failed to resolve JavaScript extractor.'
-}
-
-Write-Output "Found JavaScript extractor at '${env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}'."
-
-# Run the JavaScript autobuilder.
-$JavaScriptAutoBuild = Join-Path $env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT 'tools\autobuild.cmd'
-Write-Output "Running JavaScript autobuilder at '${JavaScriptAutoBuild}'."
-
-# Copy the values of the Actions extractor environment variables to the JavaScript extractor environment variables.
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_DIAGNOSTIC_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_DIAGNOSTIC_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_LOG_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_LOG_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_SCRATCH_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SCRATCH_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_SOURCE_ARCHIVE_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SOURCE_ARCHIVE_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_TRAP_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_TRAP_DIR
-$env:CODEQL_EXTRACTOR_JAVASCRIPT_WIP_DATABASE = $env:CODEQL_EXTRACTOR_ACTIONS_WIP_DATABASE
-
-&$JavaScriptAutoBuild
-if ($LASTEXITCODE -ne 0) {
-    throw "JavaScript autobuilder failed."
-}

actions-extractor/tools/autobuild.cmd

@@ -1,3 +0,0 @@
-@echo off
-rem All of the work is done in the PowerShell script
-powershell.exe %~dp0autobuild-impl.ps1

actions-extractor/tools/autobuild.sh

@@ -1,39 +0,0 @@
-#!/bin/sh
-
-set -eu
-
-DEFAULT_PATH_FILTERS=$(cat << END
-exclude:**/*
-include:.github/workflows/**/*.yml
-include:.github/workflows/**/*.yaml
-include:**/action.yml
-include:**/action.yaml
-END
-)
-
-if [ -n "${LGTM_INDEX_INCLUDE:-}" ] || [ -n "${LGTM_INDEX_EXCLUDE:-}" ] || [ -n "${LGTM_INDEX_FILTERS:-}" ] ; then
-    echo "Path filters set. Passing them through to the JavaScript extractor."
-else
-    echo "No path filters set. Using the default filters."
-    LGTM_INDEX_FILTERS="${DEFAULT_PATH_FILTERS}"
-    export LGTM_INDEX_FILTERS
-fi
-
-# Find the JavaScript extractor directory via `codeql resolve extractor`.
-CODEQL_EXTRACTOR_JAVASCRIPT_ROOT="$($CODEQL_DIST/codeql resolve extractor --language javascript)"
-export CODEQL_EXTRACTOR_JAVASCRIPT_ROOT
-
-echo "Found JavaScript extractor at '${CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}'."
-
-# Run the JavaScript autobuilder
-JAVASCRIPT_AUTO_BUILD="${CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}/tools/autobuild.sh"
-echo "Running JavaScript autobuilder at '${JAVASCRIPT_AUTO_BUILD}'."
-
-# Copy the values of the Actions extractor environment variables to the JavaScript extractor environment variables.
-env CODEQL_EXTRACTOR_JAVASCRIPT_DIAGNOSTIC_DIR="${CODEQL_EXTRACTOR_ACTIONS_DIAGNOSTIC_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_LOG_DIR="${CODEQL_EXTRACTOR_ACTIONS_LOG_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_SCRATCH_DIR="${CODEQL_EXTRACTOR_ACTIONS_SCRATCH_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_SOURCE_ARCHIVE_DIR="${CODEQL_EXTRACTOR_ACTIONS_SOURCE_ARCHIVE_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_TRAP_DIR="${CODEQL_EXTRACTOR_ACTIONS_TRAP_DIR}" \
-    CODEQL_EXTRACTOR_JAVASCRIPT_WIP_DATABASE="${CODEQL_EXTRACTOR_ACTIONS_WIP_DATABASE}" \
-    ${JAVASCRIPT_AUTO_BUILD}

analyze/action.yml

@@ -19,9 +19,10 @@ inputs:
     # If changing this, make sure to update workflow.ts accordingly.
     default: "always"
   cleanup-level:
-    description: "Level of cleanup to perform on CodeQL databases at the end of the analyze step. This should either be 'none' to skip cleanup, or be a valid argument for the --cache-cleanup flag of the CodeQL CLI command 'codeql database cleanup' as documented at https://codeql.github.com/docs/codeql-cli/manual/database-cleanup"
+    description: >-
+      DEPRECATED. This option is ignored since, for performance reasons, the CodeQL Action automatically
+      manages cleanup of intermediate results.
     required: false
-    default: "brutal"
   ram:
     description: >-
       The amount of memory in MB that can be used by CodeQL for database finalization and query execution.

eslint.config.mjs

@@ -138,6 +138,7 @@ export default [
     rules: {
       "@typescript-eslint/no-explicit-any": "off",
       "@typescript-eslint/no-unsafe-assignment": "off",
+      "@typescript-eslint/no-unsafe-enum-comparison": "off",
       "@typescript-eslint/no-unsafe-member-access": "off",
       "@typescript-eslint/no-var-requires": "off",
       "@typescript-eslint/prefer-regexp-exec": "off",

init/action.yml

@@ -83,6 +83,9 @@ inputs:
   queries:
     description: Comma-separated list of additional queries to run. By default, this overrides the same setting in a configuration file; prefix with "+" to use both sets of queries.
     required: false
+  quality-queries:
+    description: '[Internal] Comma-separated list of code quality queries to run.'
+    required: false
   packs:
     description: >-
       Comma-separated list of packs to run. Reference a pack in the format `scope/name[@version]`. If `version` is not

justfile

@@ -0,0 +1,30 @@
+# Perform all working copy cleanup operations
+all: lint sync
+
+# Lint source typescript
+lint:
+    npm run lint-fix
+
+# Sync generated files (javascript and PR checks)
+sync: build update-pr-checks
+
+# Perform all necessary steps to update the PR checks
+update-pr-checks:
+    pr-checks/sync.sh
+
+# Transpile typescript code into javascript
+build:
+    npm run build
+
+# Build then run all the tests
+test: build
+    npm run test
+
+# Run the tests for a single file
+test_file filename: build
+    npx ava --verbose {{filename}}
+
+[doc("Refresh the .js build artefacts in the lib directory")]
+[confirm]
+refresh-lib:
+    rm -rf lib && npm run build

lib/actions-util.js

@@ -49,10 +49,14 @@ exports.isDefaultSetup = isDefaultSetup;
 exports.prettyPrintInvocation = prettyPrintInvocation;
 exports.ensureEndsInPeriod = ensureEndsInPeriod;
 exports.runTool = runTool;
+exports.getPullRequestBranches = getPullRequestBranches;
+exports.isAnalyzingPullRequest = isAnalyzingPullRequest;
+exports.fixCodeQualityCategory = fixCodeQualityCategory;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const core = __importStar(require("@actions/core"));
 const toolrunner = __importStar(require("@actions/exec/lib/toolrunner"));
+const github = __importStar(require("@actions/github"));
 const io = __importStar(require("@actions/io"));
 const util_1 = require("./util");
 // eslint-disable-next-line import/no-commonjs, @typescript-eslint/no-require-imports
@@ -261,7 +265,7 @@ function prettyPrintInvocation(cmd, args) {
  * An error from a tool invocation, with associated exit code, stderr, etc.
  */
 class CommandInvocationError extends Error {
-    constructor(cmd, args, exitCode, stderr, stdout) {
+    constructor(cmd, args, exitCode, stderr, stdout = "") {
         const prettyCommand = prettyPrintInvocation(cmd, args);
         const lastLine = ensureEndsInPeriod(stderr.trim().split("\n").pop()?.trim() || "n/a");
         super(`Failed to run "${prettyCommand}". ` +
@@ -352,4 +356,75 @@ const restoreInputs = function () {
     }
 };
 exports.restoreInputs = restoreInputs;
+/**
+ * Returns the base and head branches of the pull request being analyzed.
+ *
+ * @returns the base and head branches of the pull request, or undefined if
+ * we are not analyzing a pull request.
+ */
+function getPullRequestBranches() {
+    const pullRequest = github.context.payload.pull_request;
+    if (pullRequest) {
+        return {
+            base: pullRequest.base.ref,
+            // We use the head label instead of the head ref here, because the head
+            // ref lacks owner information and by itself does not uniquely identify
+            // the head branch (which may be in a forked repository).
+            head: pullRequest.head.label,
+        };
+    }
+    // PR analysis under Default Setup does not have the pull_request context,
+    // but it should set CODE_SCANNING_REF and CODE_SCANNING_BASE_BRANCH.
+    const codeScanningRef = process.env.CODE_SCANNING_REF;
+    const codeScanningBaseBranch = process.env.CODE_SCANNING_BASE_BRANCH;
+    if (codeScanningRef && codeScanningBaseBranch) {
+        return {
+            base: codeScanningBaseBranch,
+            // PR analysis under Default Setup analyzes the PR head commit instead of
+            // the merge commit, so we can use the provided ref directly.
+            head: codeScanningRef,
+        };
+    }
+    return undefined;
+}
+/**
+ * Returns whether we are analyzing a pull request.
+ */
+function isAnalyzingPullRequest() {
+    return getPullRequestBranches() !== undefined;
+}
+/**
+ * A workaround for code quality to map category names from old default setup workflows
+ * to ones that the code quality service expects.
+ */
+const qualityCategoryMapping = {
+    "c#": "csharp",
+    cpp: "c-cpp",
+    c: "c-cpp",
+    "c++": "c-cpp",
+    java: "java-kotlin",
+    javascript: "javascript-typescript",
+    typescript: "javascript-typescript",
+    kotlin: "java-kotlin",
+};
+/** Adjusts the category string for a Code Quality SARIF file if an "old"
+ * category identifier is used by Default Setup.
+ */
+function fixCodeQualityCategory(logger, category) {
+    // The `category` should always be set by Default Setup. We perform this check
+    // to avoid potential issues if Code Quality supports Advanced Setup in the future
+    // and before this workaround is removed.
+    if (category !== undefined &&
+        isDefaultSetup() &&
+        category.startsWith("/language:")) {
+        const language = category.substring("/language:".length);
+        const mappedLanguage = qualityCategoryMapping[language];
+        if (mappedLanguage) {
+            const newCategory = `/language:${mappedLanguage}`;
+            logger.info(`Adjusted category for Code Quality from '${category}' to '${newCategory}'.`);
+            return newCategory;
+        }
+    }
+    return category;
+}
 //# sourceMappingURL=actions-util.js.map