Merge pull request #2831 from github/cklin/diff-informed-query-filtering

Respect `exclude-from-incremental` query tag for diff-informed analysis

.eslintignore

@@ -1,4 +0,0 @@
-**/webpack.config.js
-lib/**
-src/testdata/**
-tests/**

.eslintrc.json

@@ -1,77 +0,0 @@
-
-{
-    "parser": "@typescript-eslint/parser",
-    "parserOptions": {
-        "project": "./tsconfig.json"
-    },
-    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
-    "extends": [
-        "eslint:recommended",
-        "plugin:@typescript-eslint/recommended",
-        "plugin:@typescript-eslint/recommended-requiring-type-checking",
-        "plugin:github/recommended",
-        "plugin:github/typescript",
-        "plugin:import/typescript"
-    ],
-    "rules": {
-        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
-        "i18n-text/no-en": "off",
-        "import/extensions": ["error", {
-            // Allow importing JSON files
-            "json": {}
-        }],
-        "import/no-amd": "error",
-        "import/no-commonjs": "error",
-        "import/no-cycle": "error",
-        "import/no-dynamic-require": "error",
-        // Disable the rule that checks that devDependencies aren't imported since we use a single
-        // linting configuration file for both source and test code.
-        "import/no-extraneous-dependencies": ["error", {"devDependencies": true}],
-        "import/no-namespace": "off",
-        "import/no-unresolved": "error",
-        "import/no-webpack-loader-syntax": "error",
-        "import/order": ["error", {
-            "alphabetize": {"order": "asc"},
-            "newlines-between": "always"
-        }],
-        "max-len": ["error", {
-            "code": 120,
-            "ignoreUrls": true,
-            "ignoreStrings": true,
-            "ignoreTemplateLiterals": true
-        }],
-        "no-async-foreach/no-async-foreach": "error",
-        "no-console": "off",
-        "no-sequences": "error",
-        "no-shadow": "off",
-        "@typescript-eslint/no-shadow": ["error"],
-        "one-var": ["error", "never"]
-    },
-    "overrides": [{
-        // "temporarily downgraded during transition to eslint
-        "files": "**",
-        "rules": {
-            "@typescript-eslint/ban-types": "off",
-            "@typescript-eslint/explicit-module-boundary-types": "off",
-            "@typescript-eslint/no-explicit-any": "off",
-            "@typescript-eslint/no-unsafe-assignment": "off",
-            "@typescript-eslint/no-unsafe-call": "off",
-            "@typescript-eslint/no-unsafe-member-access": "off",
-            "@typescript-eslint/no-unsafe-return": "off",
-            "@typescript-eslint/no-var-requires": "off",
-            "@typescript-eslint/prefer-regexp-exec": "off",
-            "@typescript-eslint/require-await": "off",
-            "@typescript-eslint/restrict-template-expressions": "off",
-            "func-style": "off",
-            "sort-imports": "off"
-        }
-    }],
-    "settings": {
-        "import/resolver": {
-            "node": {
-                "moduleDirectory": ["node_modules", "src"]
-            },
-            "typescript": {}
-        }
-    }
-}

.github/actions/check-codescanning-config/action.yml

@@ -29,7 +29,16 @@ inputs:
   tools:
     required: true
     description: |
-      The url of codeql to use.
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
 
 runs:
   using: composite
@@ -52,11 +61,12 @@ runs:
     - name: Check config
       working-directory: ${{ github.action_path }}
       shell: bash
-      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
-
+      env:
+        EXPECTED_CONFIG_FILE_CONTENTS: '${{ inputs.expected-config-file-contents }}'
+      run: ts-node ./index.ts "$RUNNER_TEMP/user-config.yaml" "$EXPECTED_CONFIG_FILE_CONTENTS"
     - name: Clean up
       shell: bash
       if: always()
       run: |
-        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
-        rm -rf ${{ runner.temp }}/user-config.yaml
+        rm -rf $RUNNER_TEMP/codescanning-config-cli-test
+        rm -rf $RUNNER_TEMP/user-config.yaml

.github/actions/check-codescanning-config/index.ts

@@ -8,7 +8,7 @@ const actualConfig = loadActualConfig()
 
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
-  core.info('No expected configuration provided')
+  core.setFailed('No expected configuration provided')
 } else {
   core.startGroup('Expected generated user config')
   core.info(yaml.dump(JSON.parse(rawExpectedConfig)))

.github/actions/prepare-test/action.yml

@@ -2,12 +2,16 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'latest', 'default', 'nightly-latest', 'nightly-YYYY-MM-DD', or 'stable-YYYY-MM-DD'."
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
     default: 'false'
     required: false
+  setup-kotlin:
+    description: "If true, we setup kotlin"
+    default: 'true'
+    required: true
 outputs:
   tools-url:
     description: "The value that should be passed as the 'tools' input of the 'init' step."
@@ -28,14 +32,28 @@ runs:
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
+        if [[ ${{ inputs.version }} == "linked" ]]; then
+          echo "tools-url=linked" >> "$GITHUB_OUTPUT"
+          exit 0
+        elif [[ ${{ inputs.version }} == "default" ]]; then
+          echo "tools-url=" >> "$GITHUB_OUTPUT"
+          exit 0
+        fi
+
+        if [[ ${{ inputs.version }} == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
+          extension="tar.zst"
+        else
+          extension="tar.gz"
+        fi
+
         if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
-          artifact_name="codeql-bundle.tar.gz"
+          artifact_name="codeql-bundle.$extension"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
-          artifact_name="codeql-bundle-linux64.tar.gz"
+          artifact_name="codeql-bundle-linux64.$extension"
         elif [[ "$RUNNER_OS" == "macOS" ]]; then
-          artifact_name="codeql-bundle-osx64.tar.gz"
+          artifact_name="codeql-bundle-osx64.$extension"
         elif [[ "$RUNNER_OS" == "Windows" ]]; then
-          artifact_name="codeql-bundle-win64.tar.gz"
+          artifact_name="codeql-bundle-win64.$extension"
         else
           echo "::error::Unrecognized OS $RUNNER_OS"
           exit 1
@@ -46,15 +64,16 @@ runs:
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
           version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
-          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version-manual/$artifact_name" >> $GITHUB_OUTPUT
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ ${{ inputs.version }} == *"stable"* ]]; then
           version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == "latest" ]]; then
-          echo "tools-url=latest" >> $GITHUB_OUTPUT
-        elif [[ ${{ inputs.version }} == "default" ]]; then
-          echo "tools-url=" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"
           exit 1
         fi
+
+    - uses: fwilhe2/setup-kotlin@9c245a6425255f5e98ba1ce6c15d31fce7eca9da
+      if: ${{ inputs.setup-kotlin == 'true' }}
+      with:
+        version: 1.8.21

.github/actions/query-filter-test/action.yml

@@ -23,7 +23,16 @@ inputs:
   tools:
     required: true
     description: |
-      The url of codeql to use.
+      The version of CodeQL passed to the `tools` input of the init action.
+      This can be any of the following:
+
+      - A local path to a tarball containing the CodeQL tools, or
+      - A URL to a GitHub release assets containing the CodeQL tools, or
+      - A special value `linked` which is forcing the use of the CodeQL tools
+        that the action has been bundled with.
+
+      If not specified, the Action will check in several places until it finds
+      the CodeQL tools.
 
 runs:
   using: composite
@@ -39,7 +48,6 @@ runs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
-        upload-database: false
         upload: never
       env:
         CODEQL_ACTION_TEST_MODE: "true"

.github/actions/release-initialise/action.yml

@@ -18,12 +18,12 @@ runs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: 3.8
+        python-version: 3.12
 
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install PyGithub==1.55 requests
+        pip install PyGithub==2.3.0 requests
       shell: bash
 
     - name: Update git config

.github/actions/setup-swift/action.yml

@@ -11,7 +11,7 @@ runs:
       id: get_swift_version
       if: runner.os == 'Linux'
       shell: bash
-      env: 
+      env:
         CODEQL_PATH: ${{ inputs.codeql-path }}
       run: |
         SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
@@ -19,7 +19,7 @@ runs:
           VERSION="null"
         else
           VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
-          # Specify 5.x.0, otherwise setup Action will default to latest minor version. 
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version.
           if [ $VERSION = "5.7" ]; then
             VERSION="5.7.0"
           elif [ $VERSION = "5.8" ]; then
@@ -29,11 +29,11 @@ runs:
           # setup-swift does not yet support v5.9.1 Remove this when it does.
           elif [ $VERSION = "5.9.1" ]; then
             VERSION="5.9.0"
-          fi 
+          fi
         fi
         echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
 
-    - uses: swift-actions/setup-swift@cdbe0f7f4c77929b6580e71983e8606e55ffe7e4 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+    - uses: redsun82/setup-swift@362f49f31da2f5f4f851657046bdd1290d03edc8 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
       if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
       with:
         swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/codeql/codeql-actions-config.yml

@@ -0,0 +1,4 @@
+# Configuration for the CodeQL Actions Queries
+name: "CodeQL Actions Queries config"
+queries:
+  - uses: security-and-quality

.github/dependabot.yml

@@ -16,6 +16,10 @@ updates:
       # v7 requires ESM
       - dependency-name: "del"
         versions: ["^7.0.0"]
+      # This is broken due to the way configuration files have changed. 
+      # This might be fixed when we move to eslint v9.
+      - dependency-name: "eslint-plugin-import"
+        versions: [">=2.30.0"]
     groups:
       npm:
         patterns:

.github/releases.ini

@@ -1 +1 @@
-OLDEST_SUPPORTED_MAJOR_VERSION=2
+OLDEST_SUPPORTED_MAJOR_VERSION=3

.github/update-release-branch.py

@@ -1,5 +1,6 @@
 import argparse
 import datetime
+import fileinput
 import re
 from github import Github
 import json
@@ -60,7 +61,7 @@ def open_pr(
 
   # Start constructing the body text
   body = []
-  body.append(f'Merging {source_branch_short_sha} into {target_branch}.')
+  body.append(f'Merging {source_branch_short_sha} into `{target_branch}`.')
 
   body.append('')
   body.append(f'Conductor for this PR is @{conductor}.')
@@ -92,7 +93,7 @@ def open_pr(
       'branch to resolve the merge conflicts.')
   body.append(' - [ ] Ensure the CHANGELOG displays the correct version and date.')
   body.append(' - [ ] Ensure the CHANGELOG includes all relevant, user-facing changes since the last release.')
-  body.append(f' - [ ] Check that there are not any unexpected commits being merged into the {target_branch} branch.')
+  body.append(f' - [ ] Check that there are not any unexpected commits being merged into the `{target_branch}` branch.')
   body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
   if not is_primary_release:
@@ -171,6 +172,19 @@ def get_current_version():
   with open('package.json', 'r') as f:
     return json.load(f)['version']
 
+# `npm version` doesn't always work because of merge conflicts, so we
+# replace the version in package.json textually.
+def replace_version_package_json(prev_version, new_version):
+  prev_line_is_codeql = False
+  for line in fileinput.input('package.json', inplace = True, encoding='utf-8'):
+    if prev_line_is_codeql and f'\"version\": \"{prev_version}\"' in line:
+      print(line.replace(prev_version, new_version), end='')
+    else:
+      prev_line_is_codeql = False
+      print(line, end='') 
+    if '\"name\": \"codeql\",' in line:
+        prev_line_is_codeql = True 
+
 def get_today_string():
   today = datetime.datetime.today()
   return '{:%d %b %Y}'.format(today)
@@ -186,16 +200,17 @@ def process_changelog_for_backports(source_branch_major_version, target_branch_m
   with open('CHANGELOG.md', 'r') as f:
 
     # until we find the first section, just duplicate all lines
-    while True:
+    found_first_section = False
+    while not found_first_section:
       line = f.readline()
       if not line:
         raise Exception('Could not find any change sections in CHANGELOG.md') # EOF
 
-      output += line
       if line.startswith('## '):
         line = line.replace(f'## {source_branch_major_version}', f'## {target_branch_major_version}')
-        # we have found the first section, so now handle things differently
-        break
+        found_first_section = True
+
+      output += line
 
     # found_content tracks whether we hit two headings in a row
     found_content = False
@@ -373,9 +388,9 @@ def main():
       run_git('commit', '--no-edit')
 
     # Migrate the package version number from a vLatest version number to a vOlder version number
-    print(f'Setting version number to {version}')
-    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
-    run_git('add', 'package.json', 'package-lock.json')
+    print(f'Setting version number to {version} in package.json')
+    replace_version_package_json(get_current_version(), version) # We rely on the `Update dependencies` workflow to update package-lock.json
+    run_git('add', 'package.json')
 
     # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
     print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')

.github/workflows/__all-platform-bundle.yml

@@ -7,71 +7,53 @@ name: PR Check - All-platform bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   all-platform-bundle:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
     name: All-platform bundle
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'true'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - id: init
-      uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -7,76 +7,60 @@ name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   analyze-ref-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -7,86 +7,69 @@ name: PR Check - autobuild-action
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   autobuild-action:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
     name: autobuild-action
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: csharp
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-      env:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        env:
       # Explicitly disable the CLR tracer.
-        COR_ENABLE_PROFILING: ''
-        COR_PROFILER: ''
-        COR_PROFILER_PATH_64: ''
-        CORECLR_ENABLE_PROFILING: ''
-        CORECLR_PROFILER: ''
-        CORECLR_PROFILER_PATH_64: ''
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - name: Check database
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d csharp ]]; then
-          echo "Did not find a C# database"
-          exit 1
-        fi
+          COR_ENABLE_PROFILING: ''
+          COR_PROFILER: ''
+          COR_PROFILER_PATH_64: ''
+          CORECLR_ENABLE_PROFILING: ''
+          CORECLR_PROFILER: ''
+          CORECLR_PROFILER_PATH_64: ''
+      - uses: ./../action/analyze
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d csharp ]]; then
+            echo "Did not find a C# database"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        shell: bash
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -0,0 +1,73 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode autobuild
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -0,0 +1,71 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode manual
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-manual:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode manual
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: manual
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "manual" ]]; then
+            echo "Expected build mode to be 'manual' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-none.yml

@@ -0,0 +1,73 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode none
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-none:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode none
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "none" ]]; then
+            echo "Expected build mode to be 'none' but was $build_mode"
+            exit 1
+          fi
+
+  # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+      - uses: ./../action/autobuild
+        if: matrix.version != 'nightly-latest'
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-rollback.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode rollback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-rollback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode rollback
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -7,109 +7,94 @@ name: PR Check - Config export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   config-export:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Config export
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          queries: security-extended
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check config properties appear in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
 
-        matrix.version == 'stable-20221211' ||
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+            const configSummary = run.properties.codeqlConfigSummary;
 
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        queries: security-extended
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-    - name: Upload SARIF
-      uses: actions/upload-artifact@v3
-      with:
-        name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-        path: ${{ runner.temp }}/results/javascript.sarif
-        retention-days: 7
-    - name: Check config properties appear in SARIF
-      uses: actions/github-script@v7
-      env:
-        SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-      with:
-        script: |
-          const fs = require('fs');
-
-          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-          const run = sarif.runs[0];
-          const configSummary = run.properties.codeqlConfigSummary;
-
-          if (configSummary === undefined) {
-            core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
-          }
-          if (configSummary.disableDefaultQueries !== false) {
-            core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' + 
-              `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
-          }
-          const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
-          // Use JSON.stringify to deep-equal the arrays.
-          if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
-            core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` + 
-              `${JSON.stringify(configSummary.queries)}.`);
-          }
-          core.info('Finished config export tests.');
+            if (configSummary === undefined) {
+              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+            }
+            if (configSummary.disableDefaultQueries !== false) {
+              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
+                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+            }
+            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+            // Use JSON.stringify to deep-equal the arrays.
+            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
+                `${JSON.stringify(configSummary.queries)}.`);
+            }
+            core.info('Finished config export tests.');
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-input.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Config input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  config-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Config input
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Copy queries into workspace
+        run: |
+          cp -a ../action/queries .
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+          build-mode: none
+          config: |
+            disable-default-queries: true
+            queries:
+              - name: Run custom query
+                uses: ./queries/default-setup-environment-variables.ql
+            paths-ignore:
+              - tests
+              - lib
+
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check SARIF
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/codeql-action/default-setup-env-vars
+          queries-not-run: javascript/codeql-action/default-setup-context-properties
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-disabled.yml

@@ -7,82 +7,67 @@ name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   cpp-deptrace-disabled:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Test setup
-      shell: bash
-      run: |
-        cp -a ../action/tests/cpp-autobuild autobuild-dir
-    - uses: ./../action/init
-      with:
-        languages: cpp
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-      with:
-        working-directory: autobuild-dir
-      env:
-        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-    - shell: bash
-      run: |
-        if ls /usr/bin/errno; then
-          echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+      - shell: bash
+        run: |
+          if ls /usr/bin/errno; then
+            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -7,80 +7,65 @@ name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: macos-latest
-          version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Test setup
-      shell: bash
-      run: |
-        cp -a ../action/tests/cpp-autobuild autobuild-dir
-    - uses: ./../action/init
-      with:
-        languages: cpp
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-      with:
-        working-directory: autobuild-dir
-      env:
-        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-    - shell: bash
-      run: |
-        if ! ls /usr/bin/errno; then
-          echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
-        else
-          echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - shell: bash
+        run: |
+          if ! ls /usr/bin/errno; then
+            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+          else
+            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cpp-deptrace-enabled.yml

@@ -7,82 +7,67 @@ name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Test setup
-      shell: bash
-      run: |
-        cp -a ../action/tests/cpp-autobuild autobuild-dir
-    - uses: ./../action/init
-      with:
-        languages: cpp
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-      with:
-        working-directory: autobuild-dir
-      env:
-        CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-    - shell: bash
-      run: |
-        if ! ls /usr/bin/errno; then
-          echo "Did not autoinstall errno"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - shell: bash
+        run: |
+          if ! ls /usr/bin/errno; then
+            echo "Did not autoinstall errno"
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__diagnostics-export.yml

@@ -7,156 +7,131 @@ name: PR Check - Diagnostic export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   diagnostics-export:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20230317
-        - os: macos-latest
-          version: stable-20230317
-        - os: windows-latest
-          version: stable-20230317
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Diagnostic export
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Add test diagnostics
-      shell: bash
-      env:
-        CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
-      run: |
-        for i in {1..2}; do
-          # Use the same location twice to test the workaround for the bug in CodeQL CLI 2.12.5 that
-          # produces an invalid diagnostic with multiple identical location objects.
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Add test diagnostics
+        shell: bash
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
           "$CODEQL_PATH" database add-diagnostic \
             "$RUNNER_TEMP/codeql_databases/javascript" \
             --file-path /path/to/file \
-            --plaintext-message "Plaintext message $i" \
+            --plaintext-message "Plaintext message" \
             --source-id "lang/diagnostics/example" \
             --source-name "Diagnostic name" \
             --ready-for-status-page
-        done
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-    - name: Upload SARIF
-      uses: actions/upload-artifact@v3
-      with:
-        name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-        path: ${{ runner.temp }}/results/javascript.sarif
-        retention-days: 7
-    - name: Check diagnostics appear in SARIF
-      uses: actions/github-script@v7
-      env:
-        SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-      with:
-        script: |
-          const fs = require('fs');
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostics appear in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
 
-          function checkStatusPageNotification(n) {
-            const expectedMessage = 'Plaintext message 1\n\nCodeQL also found 1 other diagnostic like this. See the workflow log for details.';
-            if (n.message.text !== expectedMessage) {
-              core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+            function checkStatusPageNotification(n) {
+              const expectedMessage = 'Plaintext message';
+              if (n.message.text !== expectedMessage) {
+                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+              }
+              if (n.locations.length !== 1) {
+                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+              }
             }
-            if (n.locations.length !== 1) {
-              core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
             }
-          }
+            checkStatusPageNotification(statusPageNotifications[0]);
 
-          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-          const run = sarif.runs[0];
-
-          const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-          const statusPageNotifications = toolExecutionNotifications.filter(n =>
-            n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
-          );
-          if (statusPageNotifications.length !== 1) {
-            core.setFailed(
-              'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
-                `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                `${statusPageNotifications.length}. All notification reporting descriptors: ` + 
-                `${JSON.stringify(toolExecutionNotifications)}.`
+            const notifications = run.tool.driver.notifications;
+            const diagnosticNotification = notifications.filter(n =>
+              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+                n.fullDescription.text === 'Diagnostic name'
             );
-          }
-          checkStatusPageNotification(statusPageNotifications[0]);
+            if (diagnosticNotification.length !== 1) {
+              core.setFailed(
+                'Expected exactly one notification for this diagnostic in the ' +
+                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                  `${diagnosticNotification.length}. All notifications: ` +
+                  `${JSON.stringify(notifications)}.`
+              );
+            }
 
-          const notifications = run.tool.driver.notifications;
-          const diagnosticNotification = notifications.filter(n =>
-            n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
-              n.fullDescription.text === 'Diagnostic name'
-          );
-          if (diagnosticNotification.length !== 1) {
-            core.setFailed(
-              'Expected exactly one notification for this diagnostic in the ' +
-                `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
-                `${diagnosticNotification.length}. All notifications: ` +
-                `${JSON.stringify(notifications)}.`
-            );
-          }
-
-          core.info('Finished diagnostic export test');
+            core.info('Finished diagnostic export test');
     env:
       CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__export-file-baseline-information.yml

@@ -7,103 +7,89 @@ name: PR Check - Export file baseline information
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   export-file-baseline-information:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Export file baseline information
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-    - name: Upload SARIF
-      uses: actions/upload-artifact@v3
-      with:
-        name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-        path: ${{ runner.temp }}/results/javascript.sarif
-        retention-days: 7
-    - name: Check results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-        if [[ $RUNNER_OS != "Windows" ]]; then
-          expected_baseline_languages+=" swift"
-        fi
-
-        for lang in ${expected_baseline_languages}; do
-          rule_name="cli/expected-extracted-files/${lang}"
-          found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
-            select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
-          if [[ "${found_notification}" != "true" ]]; then
-            echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
-            exit 1
-          else
-            echo "Found notification '${rule_name}'."
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+          if [[ $RUNNER_OS == "macOS" ]]; then
+            expected_baseline_languages+=" swift"
           fi
-        done
+
+          for lang in ${expected_baseline_languages}; do
+            rule_name="cli/expected-extracted-files/${lang}"
+            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+            if [[ "${found_notification}" != "true" ]]; then
+              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+              exit 1
+            else
+              echo "Found notification '${rule_name}'."
+            fi
+          done
     env:
       CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extract-direct-to-toolcache.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Extract directly to toolcache
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  extract-direct-to-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Extract directly to toolcache
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_EXTRACT_TOOLCACHE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -7,82 +7,67 @@ name: PR Check - Extractor ram and threads options test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   extractor-ram-threads:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
     name: Extractor ram and threads options test
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: java
-        ram: 230
-        threads: 1
-    - name: Assert Results
-      shell: bash
-      run: |
-        if [ "${CODEQL_RAM}" != "230" ]; then
-          echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
-          exit 1
-        fi
-        if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
-          echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
-          exit 1
-        fi
-        if [ "${CODEQL_THREADS}" != "1" ]; then
-          echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
-          exit 1
-        fi
-        if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
-          echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: java
+          ram: 230
+          threads: 1
+      - name: Assert Results
+        shell: bash
+        run: |
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-custom-queries.yml

@@ -7,110 +7,58 @@ name: 'PR Check - Go: Custom queries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-custom-queries:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: windows-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: windows-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: windows-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: windows-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: 'Go: Custom queries'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: go
-        config-file: ./.github/codeql/custom-queries.yml
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          config-file: ./.github/codeql/custom-queries.yml
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -7,100 +7,85 @@ name: 'PR Check - Go: diagnostic when Go is changed after init step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: default
     name: 'Go: diagnostic when Go is changed after init step'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v5
-      with:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
       # We need a Go version that ships with statically linked binaries on Linux
-        go-version: '>=1.21.0'
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
   # Deliberately change Go after the `init` step
-    - uses: actions/setup-go@v5
-      with:
-        go-version: '1.20'
-    - name: Build code
-      shell: bash
-      run: go build main.go
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-    - name: Check diagnostic appears in SARIF
-      uses: actions/github-script@v7
-      env:
-        SARIF_PATH: ${{ runner.temp }}/results/go.sarif
-      with:
-        script: |
-          const fs = require('fs');
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '1.20'
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
 
-          const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-          const run = sarif.runs[0];
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
 
-          const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-          const statusPageNotifications = toolExecutionNotifications.filter(n =>
-            n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
-          );
-          if (statusPageNotifications.length !== 1) {
-            core.setFailed(
-              'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
-                `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                `${statusPageNotifications.length}. All notification reporting descriptors: ` +
-                `${JSON.stringify(toolExecutionNotifications)}.`
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
             );
-          }
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -0,0 +1,92 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when `file` is not installed'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-indirect-tracing-workaround-no-file-program:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when `file` is not installed'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
+      - name: Remove `file` program
+        run: |
+          echo $(which file)
+          sudo rm -rf $(which file)
+          echo $(which file)
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -7,98 +7,81 @@ name: 'PR Check - Go: workaround for indirect tracing'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: default
     name: 'Go: workaround for indirect tracing'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v5
-      with:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
       # We need a Go version that ships with statically linked binaries on Linux
-        go-version: '>=1.21.0'
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: go build main.go
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - shell: bash
-      run: |
-        if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
-          echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
-            "CODEQL_ACTION_GO_BINARY environment variable is not set."
-          exit 1
-        fi
-        if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
-          echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
-          exit 1
-        fi
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+              "CODEQL_ACTION_GO_BINARY environment variable is not set."
+            exit 1
+          fi
+          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+            exit 1
+          fi
 
 
-        # Once we start running Bash 4.2 in all environments, we can replace the
-        # `! -z` flag with the more elegant `-v` which confirms that the variable
-        # is actually unset and not potentially set to a blank value.
-        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
-          echo "Expected the Go autobuilder not to be run, but the" \
-            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
-          exit 1
-        fi
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-autobuilder.yml

@@ -7,108 +7,98 @@ name: 'PR Check - Go: tracing with autobuilder step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-tracing-autobuilder:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: 'Go: tracing with autobuilder step'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v5
-      with:
-        go-version: ~1.21.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - shell: bash
-      run: |
-        if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
-          echo "Expected the Go autobuilder to be run, but the" \
-            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
-          exit 1
-        fi
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+            echo "Expected the Go autobuilder to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -7,112 +7,102 @@ name: 'PR Check - Go: tracing with custom build steps'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: 'Go: tracing with custom build steps'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v5
-      with:
-        go-version: ~1.21.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: go build main.go
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - shell: bash
-      run: |
-        # Once we start running Bash 4.2 in all environments, we can replace the
-        # `! -z` flag with the more elegant `-v` which confirms that the variable
-        # is actually unset and not potentially set to a blank value.
-        if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
-          echo "Expected the Go autobuilder not to be run, but the" \
-            "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
-          exit 1
-        fi
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -7,102 +7,92 @@ name: 'PR Check - Go: tracing with legacy workflow'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: 'Go: tracing with legacy workflow'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/setup-go@v5
-      with:
-        go-version: ~1.21.1
-    - uses: ./../action/init
-      with:
-        languages: go
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d go ]]; then
-          echo "Did not find a Go database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.24.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__init-with-registries.yml

@@ -7,42 +7,44 @@ name: 'PR Check - Packaging: Download using registries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   init-with-registries:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Download using registries'
     permissions:
       contents: read
@@ -51,94 +53,77 @@ jobs:
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Init with registries
+        uses: ./../action/init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: ./.github/codeql/codeql-config-registries.yml
+          languages: javascript
+          registries: |
+            - url: "https://ghcr.io/v2/"
+              packages: "*/*"
+              token: "${{ secrets.GITHUB_TOKEN }}"
 
-        matrix.version == 'stable-20221211' ||
+      - name: Verify packages installed
+        shell: bash
+        run: |
+          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
 
-        matrix.version == 'stable-20230418' ||
+          if [[ -d $PRIVATE_PACK ]]
+          then
+              echo "$PRIVATE_PACK was installed."
+          else
+              echo "::error $PRIVATE_PACK pack was not installed."
+              exit 1
+          fi
 
-        matrix.version == 'stable-v2.13.5' ||
+          if [[ -d $CODEQL_PACK1 ]]
+          then
+              echo "$CODEQL_PACK1 was installed."
+          else
+              echo "::error $CODEQL_PACK1 pack was not installed."
+              exit 1
+          fi
 
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Init with registries
-      uses: ./../action/init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        config-file: ./.github/codeql/codeql-config-registries.yml
-        languages: javascript
-        registries: |
-          - url: "https://ghcr.io/v2/"
-            packages: "*/*"
-            token: "${{ secrets.GITHUB_TOKEN }}"
+      - name: Verify qlconfig.yml file was created
+        shell: bash
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+          if [[ -f $QLCONFIG_PATH ]]
+          then
+              echo "qlconfig.yml file was created."
+          else
+              echo "::error qlconfig.yml file was not created."
+              exit 1
+          fi
 
-    - name: Verify packages installed
-      shell: bash
-      run: |
-        PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
-        CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
-
-        if [[ -d $PRIVATE_PACK ]]
-        then
-            echo "$PRIVATE_PACK was installed."
-        else
-            echo "::error $PRIVATE_PACK pack was not installed."
-            exit 1
-        fi
-
-        if [[ -d $CODEQL_PACK1 ]]
-        then
-            echo "$CODEQL_PACK1 was installed."
-        else
-            echo "::error $CODEQL_PACK1 pack was not installed."
-            exit 1
-        fi
-
-    - name: Verify qlconfig.yml file was created
-      shell: bash
-      run: |
-        QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
-        echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
-        if [[ -f $QLCONFIG_PATH ]]
-        then
-            echo "qlconfig.yml file was created."
-        else
-            echo "::error qlconfig.yml file was not created."
-            exit 1
-        fi
-
-    - name: Verify contents of qlconfig.yml
+      - name: Verify contents of qlconfig.yml
     # yq is not available on windows
-      if: runner.os != 'Windows'
-      shell: bash
-      run: |
-        QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
-        cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
-        if [[ $? -eq 0 ]]
-        then
-            echo "Registry was added to qlconfig.yml file."
-        else
-            echo "::error Registry was not added to qlconfig.yml file."
-            echo "Contents of qlconfig.yml file:"
-            cat $QLCONFIG_PATH
-            exit 1
-        fi
+        if: runner.os != 'Windows'
+        shell: bash
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+          if [[ $? -eq 0 ]]
+          then
+              echo "Registry was added to qlconfig.yml file."
+          else
+              echo "::error Registry was not added to qlconfig.yml file."
+              echo "Contents of qlconfig.yml file:"
+              cat $QLCONFIG_PATH
+              exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__javascript-source-root.yml

@@ -7,85 +7,68 @@ name: PR Check - Custom source root
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   javascript-source-root:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Custom source root
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Move codeql-action
-      shell: bash
-      run: |
-        mkdir ../new-source-root
-        mv * ../new-source-root
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        source-root: ../new-source-root
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-        skip-queries: true
-        upload: never
-    - name: Assert database exists
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d javascript ]]; then
-          echo "Did not find a JavaScript database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../new-source-root
+          mv * ../new-source-root
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          source-root: ../new-source-root
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+      - name: Assert database exists
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d javascript ]]; then
+            echo "Did not find a JavaScript database"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -7,73 +7,58 @@ name: PR Check - Language aliases
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   language-aliases:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
     name: Language aliases
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: C#,java-kotlin,swift,typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-        matrix.version == 'stable-20221211' ||
+      - name: Check languages
+        run: |
+          expected_languages="csharp,java,swift,javascript"
+          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
 
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: C#,java-kotlin,swift,typescript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-    - name: Check languages
-      run: |
-        expected_languages="csharp,java,swift,javascript"
-        actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
-
-        if [ "$expected_languages" != "$actual_languages" ]; then
-          echo "Resolved languages did not match expected list. " \
-            "Expected languages: $expected_languages. Actual languages: $actual_languages."
-          exit 1
-        fi
+          if [ "$expected_languages" != "$actual_languages" ]; then
+            echo "Resolved languages did not match expected list. " \
+              "Expected languages: $expected_languages. Actual languages: $actual_languages."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -7,153 +7,147 @@ name: PR Check - Multi-language repository
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   multi-language-autodetect:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Multi-language repository
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
 
-        matrix.version == 'stable-20221211' ||
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby'
+            || '' }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-        matrix.version == 'stable-20230418' ||
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
 
-        matrix.version == 'stable-v2.13.5' ||
+      - name: Build code
+        shell: bash
+        run: ./build.sh
 
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
 
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Check language autodetect for all languages excluding Swift
+        shell: bash
+        run: |
+          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for CPP, or created it in the wrong location."
+            exit 1
+          fi
+          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for C Sharp, or created it in the wrong location."
+            exit 1
+          fi
+          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Go, or created it in the wrong location."
+            exit 1
+          fi
+          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Java, or created it in the wrong location."
+            exit 1
+          fi
+          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Javascript, or created it in the wrong location."
+            exit 1
+          fi
+          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Python, or created it in the wrong location."
+            exit 1
+          fi
+          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Ruby, or created it in the wrong location."
+            exit 1
+          fi
 
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-
-    - uses: ./../action/analyze
-      id: analysis
-      with:
-        upload-database: false
-
-    - name: Check language autodetect for all languages excluding Swift
-      shell: bash
-      run: |
-        CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
-        if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for CPP, or created it in the wrong location."
-          exit 1
-        fi
-        CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
-        if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for C Sharp, or created it in the wrong location."
-          exit 1
-        fi
-        GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
-        if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Go, or created it in the wrong location."
-          exit 1
-        fi
-        JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
-        if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Java, or created it in the wrong location."
-          exit 1
-        fi
-        JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
-        if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Javascript, or created it in the wrong location."
-          exit 1
-        fi
-        PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
-        if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Python, or created it in the wrong location."
-          exit 1
-        fi
-        RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
-        if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Ruby, or created it in the wrong location."
-          exit 1
-        fi
-
-    - name: Check language autodetect for Swift
-      if: >-
-        env.CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT == 'true' || 
-            (runner.os != 'Windows' && matrix.version == 'nightly-latest')
-      shell: bash
-      run: |
-        SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
-        if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
-          echo "Did not create a database for Swift, or created it in the wrong location."
-          exit 1
-        fi
+      - name: Check language autodetect for Swift on macOS
+        if: runner.os == 'macOS'
+        shell: bash
+        run: |
+          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Swift, or created it in the wrong location."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -7,110 +7,95 @@ name: 'PR Check - Packaging: Config and input passed to the CLI'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-        matrix.version == 'stable-20221211' ||
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-        matrix.version == 'stable-20230418' ||
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +codeql-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-
-    - name: Check results
-      uses: ./../action/.github/actions/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: 
-          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
-
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
-
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-inputs-js.yml

@@ -7,110 +7,95 @@ name: 'PR Check - Packaging: Config and input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   packaging-config-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-        matrix.version == 'stable-20221211' ||
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-        matrix.version == 'stable-20230418' ||
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +codeql-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-
-    - name: Check results
-      uses: ./../action/.github/actions/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: 
-          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
-
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
-
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-config-js.yml

@@ -7,109 +7,94 @@ name: 'PR Check - Packaging: Config file'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   packaging-config-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config file'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging.yml
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-        matrix.version == 'stable-20221211' ||
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-        matrix.version == 'stable-20230418' ||
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging.yml
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-
-    - name: Check results
-      uses: ./../action/.github/actions/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: 
-          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
-
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
-
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-inputs-js.yml

@@ -7,109 +7,94 @@ name: 'PR Check - Packaging: Action input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   packaging-inputs-js:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Action input'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging2.yml
+          languages: javascript
+          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
 
-        matrix.version == 'stable-20221211' ||
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
 
-        matrix.version == 'stable-20230418' ||
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging2.yml
-        languages: javascript
-        packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-
-    - name: Check results
-      uses: ./../action/.github/actions/check-sarif
-      with:
-        sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: 
-          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
-        queries-not-run: foo,bar
-
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
-
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__remote-config.yml

@@ -7,108 +7,55 @@ name: PR Check - Remote config file
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   remote-config:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: windows-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: windows-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: windows-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: windows-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Remote config file
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__resolve-environment-action.yml

@@ -7,107 +7,84 @@ name: PR Check - Resolve environment
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   resolve-environment-action:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-v2.13.4
-        - os: macos-latest
-          version: stable-v2.13.4
-        - os: windows-latest
-          version: stable-v2.13.4
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Resolve environment
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go,javascript-typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-        matrix.version == 'stable-20221211' ||
+      - name: Resolve environment for Go
+        uses: ./../action/resolve-environment
+        id: resolve-environment-go
+        with:
+          language: go
 
-        matrix.version == 'stable-20230418' ||
+      - name: Fail if Go configuration missing
+        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+        run: exit 1
 
-        matrix.version == 'stable-v2.13.5' ||
+      - name: Resolve environment for JavaScript/TypeScript
+        uses: ./../action/resolve-environment
+        id: resolve-environment-js
+        with:
+          language: javascript-typescript
 
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: ${{ matrix.version == 'stable-v2.13.4' && 'go' || 'go,javascript-typescript'
-          }}
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-    - name: Resolve environment for Go
-      uses: ./../action/resolve-environment
-      id: resolve-environment-go
-      with:
-        language: go
-
-    - name: Fail if Go configuration missing
-      if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
-      run: exit 1
-
-    - name: Resolve environment for JavaScript/TypeScript
-      if: matrix.version != 'stable-v2.13.4'
-      uses: ./../action/resolve-environment
-      id: resolve-environment-js
-      with:
-        language: javascript-typescript
-
-    - name: Fail if JavaScript/TypeScript configuration present
-      if: matrix.version != 'stable-v2.13.4' && 
-        fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
-      run: exit 1
+      - name: Fail if JavaScript/TypeScript configuration present
+        if:
+          fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        run: exit 1
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -7,78 +7,63 @@ name: PR Check - RuboCop multi-language
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   rubocop-multi-language:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: default
+          - os: ubuntu-latest
+            version: default
     name: RuboCop multi-language
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Set up Ruby
-      uses: ruby/setup-ruby@v1
-      with:
-        ruby-version: 2.6
-    - name: Install Code Scanning integration
-      shell: bash
-      run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
-    - name: Install dependencies
-      shell: bash
-      run: bundle install
-    - name: RuboCop run
-      shell: bash
-      run: |
-        bash -c "
-          bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
-          [[ $? -ne 2 ]]
-        "
-    - uses: ./../action/upload-sarif
-      with:
-        sarif_file: rubocop.sarif
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@1a615958ad9d422dd932dc1d5823942ee002799f # v1.227.0
+        with:
+          ruby-version: 2.6
+      - name: Install Code Scanning integration
+        shell: bash
+        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+      - name: Install dependencies
+        shell: bash
+        run: bundle install
+      - name: RuboCop run
+        shell: bash
+        run: |
+          bash -c "
+            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+            [[ $? -ne 2 ]]
+          "
+      - uses: ./../action/upload-sarif
+        with:
+          sarif_file: rubocop.sarif
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__ruby.yml

@@ -7,84 +7,69 @@ name: PR Check - Ruby analysis
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   ruby:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: Ruby analysis
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: ruby
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/analyze
-      id: analysis
-      with:
-        upload-database: false
-    - name: Check database
-      shell: bash
-      run: |
-        RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
-        if [[ ! -d "$RUBY_DB" ]]; then
-          echo "Did not create a database for Ruby."
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+          if [[ ! -d "$RUBY_DB" ]]; then
+            echo "Did not create a database for Ruby."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rust.yml

@@ -0,0 +1,71 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Rust analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  rust:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Rust analysis
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: rust
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+        env:
+          CODEQL_ACTION_RUST_ANALYSIS: true
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
+          if [[ ! -d "$RUST_DB" ]]; then
+            echo "Did not create a database for Rust."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__scaling-reserved-ram.yml

@@ -1,109 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
-# to regenerate this file.
-
-name: PR Check - Scaling reserved RAM
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  scaling-reserved-ram:
-    strategy:
-      matrix:
-        include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-    name: Scaling reserved RAM
-    permissions:
-      contents: read
-      security-events: write
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
-
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-
-    - uses: ./../action/analyze
-      id: analysis
-      with:
-        upload-database: false
-    env:
-      CODEQL_ACTION_SCALING_RESERVED_RAM: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -7,108 +7,93 @@ name: PR Check - Split workflow
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   split-workflow:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
     name: Split workflow
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+          output: ${{ runner.temp }}/results
+          upload-database: false
 
-        matrix.version == 'stable-20221211' ||
+      - name: Assert No Results
+        shell: bash
+        run: |
+          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+            echo "Expected results directory to be empty after skipping query execution!"
+            exit 1
+          fi
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
 
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        config-file: .github/codeql/codeql-config-packaging3.yml
-        packs: +codeql-testing/codeql-pack1@1.0.0
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        skip-queries: true
-        output: ${{ runner.temp }}/results
-        upload-database: false
-
-    - name: Assert No Results
-      shell: bash
-      run: |
-        if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
-          echo "Expected results directory to be empty after skipping query execution!"
-          exit 1
-        fi
-    - uses: ./../action/analyze
-      with:
-        output: ${{ runner.temp }}/results
-        upload-database: false
-    - name: Assert Results
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/results"
-        # We should have 4 hits from these rules
-        EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
-
-        # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
-        RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
-        echo "Found matching rules '$RULES'"
-        if [ "$RULES" != "$EXPECTED_RULES" ]; then
-          echo "Did not match expected rules '$EXPECTED_RULES'."
-          exit 1
-        fi
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__start-proxy.yml

@@ -0,0 +1,75 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Start proxy
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  start-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Start proxy
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Setup proxy for registries
+        id: proxy
+        uses: ./../action/start-proxy
+        with:
+          registry_secrets: '[{ "type": "nuget_feed", "url": "https://api.nuget.org/v3/index.json"
+            }]'
+
+      - name: Print proxy outputs
+        run: |
+          echo "${{ steps.proxy.outputs.proxy_host }}"
+          echo "${{ steps.proxy.outputs.proxy_port }}"
+          echo "${{ steps.proxy.outputs.proxy_urls }}"
+
+      - name: Fail if proxy outputs are not set
+        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port)
+          || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -7,80 +7,67 @@ name: PR Check - Submit SARIF after failure
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   submit-sarif-failure:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Submit SARIF after failure
     permissions:
       contents: read
-      security-events: write
+      security-events: write # needed to upload the SARIF file
+
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: actions/checkout@v4
-    - uses: ./init
-      with:
-        languages: javascript
-    - name: Fail
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/checkout@v4
+      - uses: ./init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Fail
     # We want this job to pass if the Action correctly uploads the SARIF file for
     # the failed run.
     # Setting this step to continue on error means that it is marked as completing
     # successfully, so will not fail the job.
-      continue-on-error: true
-      run: exit 1
-    - uses: ./analyze
+        continue-on-error: true
+        run: exit 1
+      - uses: ./analyze
     # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
     # above, we manually disable it with an `if` condition.
-      if: false
-      with:
-        category: /test-codeql-version:${{ matrix.version }}
+        if: false
+        with:
+          category: /test-codeql-version:${{ matrix.version }}
     env:
   # Internal-only environment variable used to indicate that the post-init Action
   # should expect to upload a SARIF file for the failed run.

.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,75 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
+      - name: Check working directory
+        shell: bash
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -7,95 +7,74 @@ name: PR Check - Swift analysis using a custom build command
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   swift-custom-build:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: default
+          - os: macos-latest
+            version: nightly-latest
     name: Swift analysis using a custom build command
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        languages: swift
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{steps.init.outputs.codeql-path}}
-    - name: Check working directory
-      shell: bash
-      run: pwd
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      id: analysis
-      with:
-        upload-database: false
-    - name: Check database
-      shell: bash
-      run: |
-        SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
-        if [[ ! -d "$SWIFT_DB" ]]; then
-          echo "Did not create a database for Swift."
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
+      - name: Check working directory
+        shell: bash
+        run: pwd
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-autobuild-working-dir.yml

@@ -7,83 +7,66 @@ name: PR Check - Autobuild working directory
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   test-autobuild-working-dir:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
     name: Autobuild working directory
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Test setup
-      shell: bash
-      run: |
-        # Make sure that Gradle build succeeds in autobuild-dir ...
-        cp -a ../action/tests/java-repo autobuild-dir
-        # ... and fails if attempted in the current directory
-        echo > build.gradle
-    - uses: ./../action/init
-      with:
-        languages: java
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/autobuild
-      with:
-        working-directory: autobuild-dir
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-    - name: Check database
-      shell: bash
-      run: |
-        cd "$RUNNER_TEMP/codeql_databases"
-        if [[ ! -d java ]]; then
-          echo "Did not find a Java database"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-local-codeql.yml

@@ -7,77 +7,59 @@ name: PR Check - Local CodeQL bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   test-local-codeql:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Local CodeQL bundle
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Fetch a CodeQL bundle
-      shell: bash
-      env:
-        CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
-      run: |
-        wget "$CODEQL_URL"
-    - id: init
-      uses: ./../action/init
-      with:
-        tools: ./codeql-bundle-linux64.tar.gz
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Fetch a CodeQL bundle
+        shell: bash
+        env:
+          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+        run: |
+          wget "$CODEQL_URL"
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-proxy.yml

@@ -7,74 +7,70 @@ name: PR Check - Proxy test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   test-proxy:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Proxy test
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
+  # These steps are required to initialise the `gh` cli in a container that doesn't
+  # come pre-installed with it. The reason for that is that this is later
+  # needed by the `prepare-test` workflow to find the latest release of CodeQL.
+      - name: Set up GitHub CLI
+        run: |
+          apt update
+          apt install -y curl libreadline8 gnupg2 software-properties-common zstd
+          curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-key add /usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-add-repository https://cli.github.com/packages
+          apt install -y gh
+        env: {}
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
     env:
       https_proxy: http://squid-proxy:3128
       CODEQL_ACTION_TEST_MODE: true
     container:
       image: ubuntu:22.04
-      options: --dns 127.0.0.1
     services:
       squid-proxy:
         image: ubuntu/squid:latest
         ports:
-        - 3128:3128
+          - 3128:3128

.github/workflows/__unset-environment.yml

@@ -7,126 +7,100 @@ name: PR Check - Test unsetting environment variables
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   unset-environment:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
     name: Test unsetting environment variables
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      id: init
-      with:
-        db-location: ${{ runner.temp }}/customDbLocation
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
-    - name: Build code
-      shell: bash
-    # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-    # workaround for our PR checks.
-      run: env -i CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN=true PATH="$PATH" HOME="$HOME"
-        ./build.sh
-    - uses: ./../action/analyze
-      id: analysis
-      with:
-        upload-database: false
-    - shell: bash
-      run: |
-        CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
-        if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
-          echo "::error::Did not create a database for CPP, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
-          exit 1
-        fi
-        CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
-        if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
-          echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
-          exit 1
-        fi
-        GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
-        if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
-          echo "::error::Did not create a database for Go, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
-          exit 1
-        fi
-        JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
-        if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
-          echo "::error::Did not create a database for Java, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
-          exit 1
-        fi
-        JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
-        if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
-          echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
-          exit 1
-        fi
-        PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
-        if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
-          echo "::error::Did not create a database for Python, or created it in the wrong location." \
-            "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
-          exit 1
-        fi
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+      - name: Build code
+        shell: bash
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
+          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+            exit 1
+          fi
+          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+            exit 1
+          fi
+          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+            echo "::error::Did not create a database for Go, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+            exit 1
+          fi
+          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+            echo "::error::Did not create a database for Java, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+            exit 1
+          fi
+          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+            exit 1
+          fi
+          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+            echo "::error::Did not create a database for Python, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -7,81 +7,66 @@ name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   upload-ref-sha-input:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-        languages: cpp,csharp,java,javascript,python
-        config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
-          github.sha }}
-    - name: Build code
-      shell: bash
-      run: ./build.sh
-    - uses: ./../action/analyze
-      with:
-        upload-database: false
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-        upload: never
-    - uses: ./../action/upload-sarif
-      with:
-        ref: refs/heads/main
-        sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -7,168 +7,108 @@ name: PR Check - Use a custom `checkout_path`
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
-    - main
-    - releases/v*
+      - main
+      - releases/v*
   pull_request:
     types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   with-checkout-path:
     strategy:
+      fail-fast: false
       matrix:
         include:
-        - os: ubuntu-latest
-          version: stable-20221211
-        - os: macos-latest
-          version: stable-20221211
-        - os: windows-latest
-          version: stable-20221211
-        - os: ubuntu-latest
-          version: stable-20230418
-        - os: macos-latest
-          version: stable-20230418
-        - os: windows-latest
-          version: stable-20230418
-        - os: ubuntu-latest
-          version: stable-v2.13.5
-        - os: macos-latest
-          version: stable-v2.13.5
-        - os: windows-latest
-          version: stable-v2.13.5
-        - os: ubuntu-latest
-          version: stable-v2.14.6
-        - os: macos-latest
-          version: stable-v2.14.6
-        - os: windows-latest
-          version: stable-v2.14.6
-        - os: ubuntu-latest
-          version: default
-        - os: macos-latest
-          version: default
-        - os: windows-latest
-          version: default
-        - os: ubuntu-latest
-          version: latest
-        - os: macos-latest
-          version: latest
-        - os: windows-latest
-          version: latest
-        - os: ubuntu-latest
-          version: nightly-latest
-        - os: macos-latest
-          version: nightly-latest
-        - os: windows-latest
-          version: nightly-latest
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
     name: Use a custom `checkout_path`
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-    - name: Setup Python on MacOS
-      uses: actions/setup-python@v5
-      if: >-
-        matrix.os == 'macos-latest' && (
-
-        matrix.version == 'stable-20221211' ||
-
-        matrix.version == 'stable-20230418' ||
-
-        matrix.version == 'stable-v2.13.5' ||
-
-        matrix.version == 'stable-v2.14.6')
-      with:
-        python-version: '3.11'
-    - name: Check out repository
-      uses: actions/checkout@v4
-    - name: Prepare test
-      id: prepare-test
-      uses: ./.github/actions/prepare-test
-      with:
-        version: ${{ matrix.version }}
-        use-all-platform-bundle: 'false'
-    - name: Set environment variable for Swift enablement
-      if: runner.os != 'Windows' && matrix.version == '20221211'
-      shell: bash
-      run: echo "CODEQL_ENABLE_EXPERIMENTAL_FEATURES_SWIFT=true" >> $GITHUB_ENV
-    - name: Delete original checkout
-      shell: bash
-      run: |
-        # delete the original checkout so we don't accidentally use it.
-        # Actions does not support deleting the current working directory, so we
-        # delete the contents of the directory instead.
-        rm -rf ./* .github .git
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Delete original checkout
+        shell: bash
+        run: |
+          # delete the original checkout so we don't accidentally use it.
+          # Actions does not support deleting the current working directory, so we
+          # delete the contents of the directory instead.
+          rm -rf ./* .github .git
   # Check out the actions repo again, but at a different location.
   # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
-    - uses: actions/checkout@v4
-      with:
-        ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        path: x/y/z/some-path
+      - uses: actions/checkout@v4
+        with:
+          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          path: x/y/z/some-path
 
-    - uses: ./../action/init
-      with:
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
       # it's enough to test one compiled language and one interpreted language
-        languages: csharp,javascript
-        source-root: x/y/z/some-path/tests/multi-language-repo
-        debug: true
+          languages: csharp,javascript
+          source-root: x/y/z/some-path/tests/multi-language-repo
 
-    - name: Build code
-      shell: bash
-      working-directory: x/y/z/some-path/tests/multi-language-repo
-      run: |
-        ./build.sh
+      - name: Build code
+        shell: bash
+        working-directory: x/y/z/some-path/tests/multi-language-repo
+        run: |
+          ./build.sh
 
-    - uses: ./../action/analyze
-      with:
-        checkout_path: x/y/z/some-path/tests/multi-language-repo
-        ref: v1.1.0
-        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        upload: never
-        upload-database: false
+      - uses: ./../action/analyze
+        with:
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
-    - uses: ./../action/upload-sarif
-      with:
-        ref: v1.1.0
-        sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
-        checkout_path: x/y/z/some-path/tests/multi-language-repo
+      - name: Verify SARIF after upload
+        shell: bash
+        run: |
+          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+          EXPECTED_REF="v1.1.0"
+          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-    - name: Verify SARIF after upload
-      shell: bash
-      run: |
-        EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
-        EXPECTED_REF="v1.1.0"
-        EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
 
-        ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
-        ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
-        ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
 
-        if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
-          echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
+          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
 
-        if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
-          echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
-
-        if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
-          echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-          echo "$RUNNER_TEMP/payload.json"
-          exit 1
-        fi
+          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle-streaming.yml

@@ -0,0 +1,110 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle (streaming)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle-streaming:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+    name: Zstandard bundle (streaming)
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            if (!toolsUrl.endsWith('.tar.zst')) {
+              core.setFailed(
+                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__zstd-bundle.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Zstandard bundle
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/check-expected-release-files.yml

@@ -13,6 +13,9 @@ jobs:
   check-expected-release-files:
     runs-on: ubuntu-latest
 
+    permissions:
+      contents: read
+
     steps:
       - name: Checkout CodeQL Action
         uses: actions/checkout@v4

.github/workflows/codeql.yml

@@ -24,7 +24,7 @@ jobs:
       versions: ${{ steps.compare.outputs.versions }}
 
     permissions:
-      security-events: write
+      contents: read
 
     steps:
     - uses: actions/checkout@v4
@@ -41,7 +41,7 @@ jobs:
       id: init-latest
       uses: ./init
       with:
-        tools: latest
+        tools: linked
         languages: javascript
     - name: Compare default and latest CodeQL bundle versions
       id: compare
@@ -54,31 +54,33 @@ jobs:
         echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
         echo "Latest CodeQL bundle version is $CODEQL_VERSION_LATEST"
 
-        # If we're running on a pull request, run with both bundles, even if `tools: latest` would
+        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
         # be the same as `tools: null`. This allows us to make the job for each of the bundles a
         # required status check.
         #
-        # If we're running on push or schedule, then we can skip running with `tools: latest` when it would be
+        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
         # the same as running with `tools: null`.
         if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LATEST" ]]; then
           VERSIONS_JSON='[null]'
         else
-          VERSIONS_JSON='[null, "latest"]'
+          VERSIONS_JSON='[null, "linked"]'
         fi
 
         # Output a JSON-encoded list with the distinct versions to test against.
         echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
-  build:
+  analyze-javascript:
     needs: [check-codeql-versions]
     strategy:
+      fail-fast: false
       matrix:
-        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-11,macos-12,macos-13]
+        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-13,macos-14]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
     permissions:
+      contents: read
       security-events: write
 
     steps:
@@ -96,3 +98,29 @@ jobs:
       run: ${{steps.init.outputs.codeql-path}} version --format=json
     - name: Perform CodeQL Analysis
       uses: ./analyze
+      with:
+        category: "/language:javascript"
+
+
+  analyze-actions:
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+
+    permissions:
+      contents: read
+      security-events: write
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+    - name: Initialize CodeQL
+      uses: ./init
+      with:
+        languages: actions
+        config-file: ./.github/codeql/codeql-actions-config.yml
+    - name: Perform CodeQL Analysis
+      uses: ./analyze
+      with:
+        category: "/language:actions"

.github/workflows/codescanning-config-cli.yml

@@ -15,19 +15,27 @@ on:
     - synchronize
     - reopened
     - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 
 jobs:
   code-scanning-config-tests:
     continue-on-error: true
 
+    permissions:
+      contents: read
+      packages: read
+      security-events: read
+
     strategy:
+      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
-          version: latest
+          version: linked
         - os: macos-latest
-          version: latest
+          version: linked
         - os: ubuntu-latest
           version: default
         - os: macos-latest

.github/workflows/debug-artifacts-failure-safe.yml

@@ -0,0 +1,102 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    permissions:
+      contents: read
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        env:
+          # Forces a failure in this step.
+          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
+        with:
+          expect-error: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            echo "Artifacts from version $version:"
+            pushd "./my-debug-artifacts-${version//./}"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+                echo "Missing a partial database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "log" ]] ; then
+                echo "Missing database initialization logs"
+                exit 1
+              fi
+              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts-failure.yml

@@ -1,93 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist
-# when the analyze step fails.
-name: PR Check - Debug artifacts after failure
-env:
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    strategy:
-      matrix:
-        os: [ubuntu-latest, macos-latest]
-    name: Upload debug artifacts after failure in analyze
-    continue-on-error: true
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Dump GitHub event
-        run: cat "${GITHUB_EVENT_PATH}"
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: latest
-      - uses: actions/setup-go@v5
-        with:
-          go-version: ^1.13.1
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          expect-error: true
-          ram: 1
-  download-and-check-artifacts:
-    name: Download and check debug artifacts after failure in analyze
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v3
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          OPERATING_SYSTEMS="ubuntu-latest macos-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for os in $OPERATING_SYSTEMS; do
-            pushd "./my-debug-artifacts-$os"
-            echo "Artifacts from run on $os:"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
-                echo "Missing a partial database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "log" ]] ; then
-                echo "Missing database initialization logs"
-                exit 1
-              fi
-              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts-safe.yml

@@ -0,0 +1,97 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.20.3
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-v2.20.3 default linked nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -1,112 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist.
-name: PR Check - Debug artifact upload
-env:
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  workflow_dispatch: {}
-jobs:
-  upload-artifacts:
-    strategy:
-      matrix:
-        os:
-        - ubuntu-latest
-        - macos-latest
-        version:
-        - stable-20221211
-        - stable-20230418
-        - stable-v2.13.5
-        - stable-v2.14.6
-        - default
-        - latest
-        - nightly-latest
-    name: Upload debug artifacts
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v4
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@v5
-        with:
-          go-version: ^1.13.1
-      - name: Setup Python on MacOS
-        uses: actions/setup-python@v5
-        if: |
-          matrix.os == 'macos-latest' && (
-          matrix.version == 'stable-20221211' ||
-          matrix.version == 'stable-20230418' ||
-          matrix.version == 'stable-v2.13.5' ||
-          matrix.version == 'stable-v2.14.6')
-        with:
-          python-version: '3.11'
-      - uses: ./../action/init
-        id: init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-      - uses: ./../action/.github/actions/setup-swift
-        with:
-          codeql-path: ${{ steps.init.outputs.codeql-path }}
-      - name: Build code
-        shell: bash
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-  download-and-check-artifacts:
-    name: Download and check debug artifacts
-    needs: upload-artifacts
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v3
-      - name: Check expected artifacts exist
-        shell: bash
-        run: |
-          VERSIONS="stable-20221211 stable-20230418 stable-v2.13.5 stable-v2.14.6 default latest nightly-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            for os in ubuntu-latest macos-latest; do
-              pushd "./my-debug-artifacts-$os-${version//./}"
-              echo "Artifacts from version $version on $os:"
-              for language in $LANGUAGES; do
-                echo "- Checking $language"
-                if [[ ! -f "$language.sarif" ]] ; then
-                  echo "Missing a SARIF file for $language"
-                  exit 1
-                fi
-                if [[ ! -f "my-db-$language.zip" ]] ; then
-                  echo "Missing a database bundle for $language"
-                  exit 1
-                fi
-                if [[ ! -d "$language/log" ]] ; then
-                  echo "Missing logs for $language"
-                  exit 1
-                fi
-              done
-              popd
-            done
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/expected-queries-runs.yml

@@ -11,6 +11,8 @@ on:
     - synchronize
     - reopened
     - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 
 jobs:
@@ -20,6 +22,9 @@ jobs:
       CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      security-events: read
     steps:
     - name: Check out repository
       uses: actions/checkout@v4
@@ -27,7 +32,7 @@ jobs:
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
-        version: latest
+        version: linked
     - uses: ./../action/init
       with:
         languages: javascript
@@ -35,8 +40,6 @@ jobs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
-        upload-database: false
-        upload: never
 
     - name: Check Sarif
       uses: ./../action/.github/actions/check-sarif

.github/workflows/post-release-mergeback.yml

@@ -21,11 +21,16 @@ on:
 jobs:
   merge-back:
     runs-on: ubuntu-latest
+    environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
       BASE_BRANCH: "${{ github.event.inputs.baseBranch || 'main' }}"
       HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
 
+    permissions:
+      contents: write # needed to create tags and push commits
+      pull-requests: write
+
     steps:
       - name: Dump environment
         run: env
@@ -108,6 +113,17 @@ jobs:
           # - `--force` since we're overwriting the `vN` tag
           git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
 
+      - name: Prepare partial Changelog
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+        run: |
+          python .github/workflows/script/prepare_changelog.py CHANGELOG.md "$VERSION" > $PARTIAL_CHANGELOG
+
+          echo "::group::Partial CHANGELOG"
+          cat $PARTIAL_CHANGELOG
+          echo "::endgroup::"
+
       - name: Create mergeback branch
         if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
         env:
@@ -150,3 +166,23 @@ jobs:
             --body "${pr_body}" \
             --assignee "${GITHUB_ACTOR}" \
             --draft
+
+      - name: Generate token
+        uses: actions/create-github-app-token@v1.11.7
+        id: app-token
+        with:
+          app-id: ${{ vars.AUTOMATION_APP_ID }}
+          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
+
+      - name: Create the GitHub release
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+          GH_TOKEN: ${{ steps.app-token.outputs.token }}
+        run: |
+          # Do not mark this release as latest. The most recent CLI release must be marked as latest.
+          gh release create \
+            "$VERSION" \
+            --latest=false \
+            --title "$VERSION" \
+            --notes-file "$PARTIAL_CHANGELOG"

.github/workflows/pr-checks.yml

@@ -2,7 +2,6 @@ name: PR Checks
 
 on:
   push:
-    branches: [main, releases/v*]
   pull_request:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
@@ -14,45 +13,35 @@ jobs:
     name: Check JS
     runs-on: ubuntu-latest
     timeout-minutes: 45
+    permissions:
+      contents: read
+      security-events: write # needed to upload ESLint results
 
     strategy:
-      matrix:
-        node-types-version: [16.11, current] # run tests on 16.11 while CodeQL Action v2 is still supported
+      fail-fast: false
 
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Lint
-        run: npm run-script lint
+        id: lint
+        run: npm run-script lint-ci
 
-      - name: Update version of @types/node
-        if: matrix.node-types-version != 'current'
-        env:
-          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
-        run: |
-          # Export `NODE_TYPES_VERSION` so it's available to jq
-          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
-          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
-          echo "${contents}" > package.json
-          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
-          # However we're not checking in the updated lockfile here, so it's fine to run
-          # `npm install` on Linux.
-          npm install
-
-          if [ ! -z "$(git status --porcelain)" ]; then
-            git config --global user.email "github-actions@github.com"
-            git config --global user.name "github-actions[bot]"
-            # The period in `git add --all .` ensures that we stage deleted files too.
-            git add --all .
-            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
-          fi
+      - name: Upload sarif
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: eslint.sarif
+          category: eslint
 
       - name: Check generated JS
         run: .github/workflows/script/check-js.sh
 
   check-node-modules:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check modules up to date
+    permissions:
+      contents: read
     runs-on: macos-latest
     timeout-minutes: 45
 
@@ -62,7 +51,10 @@ jobs:
         run: .github/workflows/script/check-node-modules.sh
 
   check-file-contents:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Check file contents
+    permissions:
+      contents: read
     runs-on: ubuntu-latest
     timeout-minutes: 45
 
@@ -86,11 +78,15 @@ jobs:
         run: .github/workflows/script/verify-pr-checks.sh
 
   npm-test:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
     name: Unit Test
     needs: [check-js, check-node-modules]
     strategy:
+      fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
+    permissions:
+      contents: read
     runs-on: ${{ matrix.os }}
     timeout-minutes: 45
 
@@ -104,13 +100,16 @@ jobs:
           npm test
 
   check-node-version:
-    if: ${{ github.event.pull_request }}
+    if: github.event.pull_request
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45
     env:
       BASE_REF: ${{ github.base_ref }}
 
+    permissions:
+      contents: read
+
     steps:
       - uses: actions/checkout@v4
       - id: head-version

.github/workflows/publish-immutable-action.yml

@@ -0,0 +1,35 @@
+name: 'Publish Immutable Action Version'
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      id-token: write
+      packages: write
+
+    steps:
+      - name: Check release name
+        id: check
+        env:
+          RELEASE_NAME: ${{ github.event.release.name }}
+        run: |
+          echo "Release name: ${{ github.event.release.name }}"
+          if [[ $RELEASE_NAME == v* ]]; then
+            echo "This is a CodeQL Action release. Create an Immutable Action"
+            echo "is-action-release=true" >> $GITHUB_OUTPUT
+          else
+            echo "This is a CodeQL Bundle release. Do not create an Immutable Action"
+            echo "is-action-release=false" >> $GITHUB_OUTPUT
+          fi
+      - name: Checking out
+        if: steps.check.outputs.is-action-release == 'true'
+        uses: actions/checkout@v4
+      - name: Publish
+        if: steps.check.outputs.is-action-release == 'true'
+        id: publish
+        uses: actions/publish-immutable-action@v0.0.4

.github/workflows/python-deps.yml

@@ -1,174 +0,0 @@
-name: Test Python Package Installation
-
-on:
-  push:
-    branches: [main, releases/v*]
-  pull_request:
-    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
-    # by other workflows.
-    types: [opened, synchronize, reopened, ready_for_review]
-    paths:
-      # Changes to this workflow.
-      - '.github/workflows/python-deps.yml'
-      # Changes to the Python package installation scripts and their tests.
-      - 'python-setup/**'
-      # Changes to the default CodeQL bundle version.
-      - '**/defaults.json'
-  schedule:
-    # Weekly on Monday.
-    - cron: '0 0 * * 1'
-  workflow_dispatch:
-
-jobs:
-  test-setup-python-scripts:
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    strategy:
-        fail-fast: false
-        matrix:
-          os: [ubuntu-20.04, ubuntu-22.04, macos-latest]
-          python_deps_type: [pipenv, poetry, requirements, setup_py]
-          python_version: [3]
-
-
-    env:
-      PYTHON_DEPS_TYPE: ${{ matrix.python_deps_type }}
-      PYTHON_VERSION: ${{ matrix.python_version }}
-
-    steps:
-    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v4
-
-    - name: Initialize CodeQL
-      uses: ./init
-      id: init
-      with:
-        tools: latest
-        languages: python
-        setup-python-dependencies: false
-
-    - name: Test Auto Package Installation
-      run: |
-        set -x
-        $GITHUB_WORKSPACE/python-setup/install_tools.sh
-
-        cd $GITHUB_WORKSPACE/python-setup/tests/${PYTHON_DEPS_TYPE}/requests-${PYTHON_VERSION}
-
-        case ${{ matrix.os }} in
-            ubuntu-20.04*)     basePath="/opt";;
-            ubuntu-22.04*)     basePath="/opt";;
-            macos-latest*)    basePath="/Users/runner";;
-        esac
-        echo ${basePath}
-
-        $GITHUB_WORKSPACE/python-setup/auto_install_packages.py "$(dirname ${{steps.init.outputs.codeql-path}})"
-    - name: Setup for extractor
-      run: |
-        echo $CODEQL_PYTHON
-        # only run if $CODEQL_PYTHON is set
-        if [ ! -z $CODEQL_PYTHON ]; then
-            $GITHUB_WORKSPACE/python-setup/tests/from_python_exe.py $CODEQL_PYTHON;
-        fi
-
-    - name: Verify packages installed
-      run: |
-        $GITHUB_WORKSPACE/python-setup/tests/check_requests.sh ${PYTHON_VERSION} 2.31.0
-
-  # This one shouldn't fail, but also won't install packages
-  test-setup-python-scripts-non-standard-location:
-    runs-on: ${{ matrix.os }}
-    strategy:
-        fail-fast: false
-        matrix:
-          os: [ubuntu-20.04, ubuntu-22.04, macos-latest]
-
-    steps:
-    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v4
-
-    - name: Initialize CodeQL
-      uses: ./init
-      id: init
-      with:
-        tools: latest
-        languages: python
-        setup-python-dependencies: false
-
-    - name: Test Auto Package Installation
-      run: |
-        set -x
-        $GITHUB_WORKSPACE/python-setup/install_tools.sh
-
-        cd $GITHUB_WORKSPACE/python-setup/tests/requirements/non-standard-location
-
-        case ${{ matrix.os }} in
-            ubuntu-20.04*)     basePath="/opt";;
-            ubuntu-22.04*)     basePath="/opt";;
-            macos-latest*)    basePath="/Users/runner";;
-        esac
-        echo ${basePath}
-
-        $GITHUB_WORKSPACE/python-setup/auto_install_packages.py "$(dirname ${{steps.init.outputs.codeql-path}})"
-
-    - name: Setup for extractor
-      run: |
-        echo $CODEQL_PYTHON
-        # only run if $CODEQL_PYTHON is set
-        if [ ! -z $CODEQL_PYTHON ]; then
-            $GITHUB_WORKSPACE/python-setup/tests/from_python_exe.py $CODEQL_PYTHON;
-        fi
-
-    - name: Verify packages installed
-      run: |
-        test -z $LGTM_INDEX_IMPORT_PATH
-
-  test-setup-python-scripts-windows:
-    runs-on: windows-latest
-    strategy:
-        fail-fast: false
-        matrix:
-          python_deps_type: [pipenv, poetry, requirements, setup_py]
-          python_version: [3]
-
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-      PYTHON_DEPS_TYPE: ${{ matrix.python_deps_type }}
-      PYTHON_VERSION: ${{ matrix.python_version }}
-
-    steps:
-    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout@v4
-
-    - uses: actions/setup-python@v5
-      with:
-        python-version: ${{ matrix.python_version }}
-
-    - name: Initialize CodeQL
-      id: init
-      uses: ./init
-      with:
-        tools: latest
-        languages: python
-        setup-python-dependencies: false
-
-    - name: Test Auto Package Installation
-      env:
-        CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
-      run: |
-        $cmd = $Env:GITHUB_WORKSPACE + "\\python-setup\\install_tools.ps1"
-        powershell -File $cmd
-
-        cd $Env:GITHUB_WORKSPACE\\python-setup/tests/$Env:PYTHON_DEPS_TYPE/requests-$Env:PYTHON_VERSION
-        $codeql_dist = (get-item $Env:CODEQL_PATH).Directory.FullName
-        py -3 $Env:GITHUB_WORKSPACE\\python-setup\\auto_install_packages.py $codeql_dist
-
-    - name: Setup for extractor
-      run: |
-        echo $Env:CODEQL_PYTHON
-
-        py -3 $Env:GITHUB_WORKSPACE\\python-setup\\tests\\from_python_exe.py $Env:CODEQL_PYTHON
-
-    - name: Verify packages installed
-      run: |
-        $cmd = $Env:GITHUB_WORKSPACE + "\\python-setup\\tests\\check_requests.ps1"
-        powershell -File $cmd $Env:PYTHON_VERSION 2.31.0

.github/workflows/python312-windows.yml

@@ -14,7 +14,11 @@ on:
 
 jobs:
   test-setup-python-scripts:
+    env:
+      CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
+    permissions:
+      contents: read
     runs-on: windows-latest
 
     steps:
@@ -32,11 +36,8 @@ jobs:
     - name: Initialize CodeQL
       uses: ./../action/init
       with:
-        tools: latest
+        tools: linked
         languages: python
 
     - name: Analyze
       uses: ./../action/analyze
-      with:
-        upload: false
-        upload-database: false

.github/workflows/query-filters.yml

@@ -11,6 +11,8 @@ on:
     - synchronize
     - reopened
     - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 
 jobs:
@@ -18,6 +20,8 @@ jobs:
     name: Query Filters Tests
     timeout-minutes: 45
     runs-on: ubuntu-latest
+    permissions:
+      contents: read # This permission is needed to allow the GitHub Actions workflow to read the contents of the repository.
     steps:
     - name: Check out repository
       uses: actions/checkout@v4
@@ -25,7 +29,7 @@ jobs:
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
-        version: latest
+        version: linked
 
     - name: Check SARIF for default queries with Single include, Single exclude
       uses: ./../action/.github/actions/query-filter-test

.github/workflows/rebuild.yml

@@ -3,6 +3,7 @@ name: Rebuild Action
 on:
   pull_request:
     types: [labeled]
+  workflow_dispatch:
 
 jobs:
   rebuild:
@@ -10,6 +11,9 @@ jobs:
     runs-on: ubuntu-latest
     if: github.event.label.name == 'Rebuild'
 
+    permissions:
+      contents: write # needed to push rebuilt commit
+      pull-requests: write # needed to comment on the PR
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -24,6 +28,23 @@ jobs:
           gh pr edit --repo github/codeql-action "$PR_NUMBER" \
             --remove-label "Rebuild"
 
+      - name: Merge in changes from base branch
+        env:
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref }}
+        run: |
+          git fetch origin "$BASE_BRANCH"
+
+          # Allow merge conflicts in `lib`, since rebuilding should resolve them.
+          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected"
+
+          # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
+          # since `node_modules/@types/semver/README.md` fails it.
+          if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
+            echo "Merge conflicts detected outside of lib/ directory. Please resolve them manually."
+            git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
+            exit 1
+          fi
+
       - name: Compile TypeScript
         run: |
           npm install
@@ -51,7 +72,8 @@ jobs:
           if [ ! -z "$(git status --porcelain)" ]; then
             git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
             git config --global user.name "github-actions[bot]"
-            git commit -am "Rebuild"
+            git add --all
+            git commit -m "Rebuild"
             git push origin "HEAD:$BRANCH"
             echo "Pushed a commit to rebuild the Action." \
               "Please mark the PR as ready for review to trigger PR checks." |

.github/workflows/script/check-js.sh

@@ -7,7 +7,7 @@ if [ ! -z "$(git status --porcelain)" ]; then
     >&2 echo "Failed: Repo should be clean before testing!"
     exit 1
 fi
-# Wipe the lib directory incase there are extra unnecessary files in there
+# Wipe the lib directory in case there are extra unnecessary files in there
 rm -rf lib
 # Generate the JavaScript files
 npm run-script build

.github/workflows/script/prepare_changelog.py

@@ -0,0 +1,37 @@
+import os
+import sys
+
+EMPTY_CHANGELOG = 'No changes.\n\n'
+
+# Prepare the changelog for the new release
+# This function will extract the part of the changelog that
+# we want to include in the new release.
+def extract_changelog_snippet(changelog_file, version_tag):
+  output = ''
+  if (not os.path.exists(changelog_file)):
+    output = EMPTY_CHANGELOG
+
+  else:
+    with open('CHANGELOG.md', 'r') as f:
+      lines = f.readlines()
+
+      # Include everything up to, but excluding the second heading
+      found_first_section = False
+      for i, line in enumerate(lines):
+        if line.startswith('## '):
+          if found_first_section:
+            break
+          found_first_section = True
+        output += line
+
+  output += f"See the full [CHANGELOG.md](https://github.com/github/codeql-action/blob/{version_tag}/CHANGELOG.md) for more information."
+
+  return output
+
+
+if len(sys.argv) < 3:
+  raise Exception('Expecting argument: changelog_file version_tag')
+changelog_file = sys.argv[1]
+version_tag = sys.argv[2]
+
+print(extract_changelog_snippet(changelog_file, version_tag))

.github/workflows/script/update-node-modules.sh

@@ -1,9 +1,12 @@
-if [ "$1" != "update" && "$1" != "check-only" ]; then
+#!/bin/bash
+set -eu
+
+if [ "$1" != "update" ] && [ "$1" != "check-only" ]; then
     >&2 echo "Failed: Invalid argument. Must be 'update' or 'check-only'"
     exit 1
 fi
 
-sudo npm install --force -g npm@9.2.0
+npm install --force -g npm@9.2.0
 
 # clean the npm cache to ensure we don't have any files owned by root
 sudo npm cache clean --force

.github/workflows/script/update-required-checks.sh

@@ -27,8 +27,8 @@ fi
 
 echo "Getting checks for $GITHUB_SHA"
 
-# Ignore any checks with "https://", CodeQL, LGTM, and Update checks.
-CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs | .[].name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+# Ignore any checks with "https://", CodeQL, LGTM, Update, and ESLint checks.
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
 
 echo "$CHECKS" | jq
 

.github/workflows/test-codeql-bundle-all.yml

@@ -2,9 +2,6 @@ name: 'PR Check - CodeQL Bundle All'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
-  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
-  # workaround for our PR checks.
-  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -16,10 +13,13 @@ on:
     - synchronize
     - reopened
     - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
   workflow_dispatch: {}
 jobs:
   test-codeql-bundle-all:
     strategy:
+      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
@@ -27,7 +27,7 @@ jobs:
     name: 'CodeQL Bundle All'
     permissions:
       contents: read
-      security-events: write
+      security-events: read
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
@@ -42,15 +42,12 @@ jobs:
     - id: init
       uses: ./../action/init
       with:
+        # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+        languages: cpp,csharp,go,java,javascript,python,ruby 
         tools: ${{ steps.prepare-test.outputs.tools-url }}
-    - uses: ./../action/.github/actions/setup-swift
-      with:
-        codeql-path: ${{ steps.init.outputs.codeql-path }}
     - name: Build code
       shell: bash
       run: ./build.sh
     - uses: ./../action/analyze
-      with:
-        upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/update-bundle.yml

@@ -17,6 +17,9 @@ jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
     runs-on: ubuntu-latest
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull requests
     steps:
       - name: Dump environment
         run: env
@@ -54,7 +57,7 @@ jobs:
           cli_version=$(jq -r '.cliVersion' src/defaults.json)
           pr_url=$(gh pr create \
             --title "Update default bundle to $cli_version" \
-            --body "This pull request updates the default CodeQL bundle, as used with \`tools: latest\` and on GHES, to $cli_version." \
+            --body "This pull request updates the default CodeQL bundle, as used with \`tools: linked\` and on GHES, to $cli_version." \
             --assignee "$GITHUB_ACTOR" \
             --draft \
           )

.github/workflows/update-dependencies.yml

@@ -9,6 +9,9 @@ jobs:
     timeout-minutes: 45
     runs-on: macos-latest
     if: contains(github.event.pull_request.labels.*.name, 'Update dependencies') && (github.event.pull_request.head.repo.full_name == 'github/codeql-action')
+    permissions:
+      contents: write # needed to push the updated dependencies
+      pull-requests: write # needed to comment on the PR
     steps:
     - name: Checkout repository
       uses: actions/checkout@v4

.github/workflows/update-release-branch.yml

@@ -22,6 +22,8 @@ jobs:
       latest_tag: ${{ steps.versions.outputs.latest_tag }}
       backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
       backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
+    permissions:
+      contents: read
     steps:
     - uses: actions/checkout@v4
       with:
@@ -63,6 +65,9 @@ jobs:
       REPOSITORY: "${{ github.repository }}"
       MAJOR_VERSION: "${{ needs.prepare.outputs.major_version }}"
       LATEST_TAG: "${{ needs.prepare.outputs.latest_tag }}"
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
     steps:
     - uses: actions/checkout@v4
       with:
@@ -104,6 +109,7 @@ jobs:
   backport:
     timeout-minutes: 45
     runs-on: ubuntu-latest
+    environment: Automation
     needs: [prepare]
     if: ${{ (github.event_name == 'push') && needs.prepare.outputs.backport_target_branches != '[]' }}
     strategy:
@@ -113,10 +119,22 @@ jobs:
     env:
       SOURCE_BRANCH: ${{ needs.prepare.outputs.backport_source_branch }}
       TARGET_BRANCH: ${{ matrix.target_branch }}
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
     steps:
-    - uses: actions/checkout@v4
+    - name: Generate token
+      uses: actions/create-github-app-token@v1.11.7
+      id: app-token
+      with:
+        app-id: ${{ vars.AUTOMATION_APP_ID }}
+        private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
+
+    - name: Checkout
+      uses: actions/checkout@v4
       with:
         fetch-depth: 0  # Need full history for calculation of diffs
+        token: ${{ steps.app-token.outputs.token }}
     - uses: ./.github/actions/release-initialise
 
     - name: Update older release branch

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -10,20 +10,23 @@ jobs:
     name: Update Supported Enterprise Server Versions
     timeout-minutes: 45
     runs-on: ubuntu-latest
-    if: ${{ github.repository == 'github/codeql-action' }}
+    if: github.repository == 'github/codeql-action'
+    permissions:
+      contents: write # needed to push commits
+      pull-requests: write # needed to create pull request
 
     steps:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.7"
+          python-version: "3.13"
       - name: Checkout CodeQL Action
         uses: actions/checkout@v4
       - name: Checkout Enterprise Releases
         uses: actions/checkout@v4
         with:
           repository: github/enterprise-releases
-          ssh-key: ${{ secrets.ENTERPRISE_RELEASES_SSH_KEY }}
+          token: ${{ secrets.ENTERPRISE_RELEASE_TOKEN }}
           path: ${{ github.workspace }}/enterprise-releases/
       - name: Update Supported Enterprise Server Versions
         run: |
@@ -54,7 +57,8 @@ jobs:
             git push origin update-supported-enterprise-server-versions
 
             body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
-            body+="version is about to be feature frozen, or because an old release has been deprecated.\n\n"
+            body+="version is about to be feature frozen, or because an old release has been deprecated."
+            body+=$'\n\n'
             body+="If an old release has been deprecated, please follow the instructions in CONTRIBUTING.md to "
             body+="deprecate the corresponding version of CodeQL."
 

.gitignore

@@ -1,2 +1,11 @@
 # Ignore for example failing-tests.json from AVA
-node_modules/.cache
+node_modules/.cache/
+# Java build files
+.gradle/
+*.class
+# macOS
+.DS_Store
+# eslint sarif report
+eslint.sarif
+# for local incremental compilation
+tsconfig.tsbuildinfo

.pre-commit-config.yaml

@@ -1,20 +1,20 @@
 repos:
   - repo: local
     hooks:
+      - id: lint-ts
+        name: Lint typescript code
+        files: \.ts$
+        language: system
+        entry: npm run lint -- --fix
       - id: compile-ts
         name: Compile typescript
         files: \.[tj]s$
         language: system
         entry: npm run build
         pass_filenames: false
-      - id: lint-ts
-        name: Lint typescript code
-        files: \.ts$
-        language: system
-        entry: npm run lint -- --fix
       - id: pr-checks-sync
         name: Synchronize PR check workflows
         files: ^.github/workflows/__.*\.yml$|^pr-checks
         language: system
-        entry: python3 pr-checks/sync.py
+        entry: pr-checks/sync.sh
         pass_filenames: false

CHANGELOG.md

@@ -2,7 +2,314 @@
 
 See the [releases page](https://github.com/github/codeql-action/releases) for the relevant changes to the CodeQL CLI and language packs.
 
-Note that the only difference between `v2` and `v3` of the CodeQL Action is the node version they support, with `v3` running on node 20 while we continue to release `v2` to support running on node 16. For example `3.22.11` was the first `v3` release and is functionally identical to `2.22.11`. This approach ensures an easy way to track exactly which features are included in different versions, indicated by the minor and patch version numbers.
+## [UNRELEASED]
+
+No user facing changes.
+
+## 3.28.13 - 24 Mar 2025
+
+No user facing changes.
+
+## 3.28.12 - 19 Mar 2025
+
+- Dependency caching should now cache more dependencies for Java `build-mode: none` extractions. This should speed up workflows and avoid inconsistent alerts in some cases.
+- Update default CodeQL bundle version to 2.20.7. [#2810](https://github.com/github/codeql-action/pull/2810)
+
+## 3.28.11 - 07 Mar 2025
+
+- Update default CodeQL bundle version to 2.20.6. [#2793](https://github.com/github/codeql-action/pull/2793)
+
+## 3.28.10 - 21 Feb 2025
+
+- Update default CodeQL bundle version to 2.20.5. [#2772](https://github.com/github/codeql-action/pull/2772)
+- Address an issue where the CodeQL Bundle would occasionally fail to decompress on macOS. [#2768](https://github.com/github/codeql-action/pull/2768)
+
+## 3.28.9 - 07 Feb 2025
+
+- Update default CodeQL bundle version to 2.20.4. [#2753](https://github.com/github/codeql-action/pull/2753)
+
+## 3.28.8 - 29 Jan 2025
+
+- Enable support for Kotlin 2.1.10 when running with CodeQL CLI v2.20.3. [#2744](https://github.com/github/codeql-action/pull/2744)
+
+## 3.28.7 - 29 Jan 2025
+
+No user facing changes.
+
+## 3.28.6 - 27 Jan 2025
+
+- Re-enable debug artifact upload for CLI versions 2.20.3 or greater. [#2726](https://github.com/github/codeql-action/pull/2726)
+
+## 3.28.5 - 24 Jan 2025
+
+- Update default CodeQL bundle version to 2.20.3. [#2717](https://github.com/github/codeql-action/pull/2717)
+
+## 3.28.4 - 23 Jan 2025
+
+No user facing changes.
+
+## 3.28.3 - 22 Jan 2025
+
+- Update default CodeQL bundle version to 2.20.2. [#2707](https://github.com/github/codeql-action/pull/2707)
+- Fix an issue downloading the CodeQL Bundle from a GitHub Enterprise Server instance which occurred when the CodeQL Bundle had been synced to the instance using the [CodeQL Action sync tool](https://github.com/github/codeql-action-sync-tool) and the Actions runner did not have Zstandard installed. [#2710](https://github.com/github/codeql-action/pull/2710)
+- Uploading debug artifacts for CodeQL analysis is temporarily disabled. [#2712](https://github.com/github/codeql-action/pull/2712)
+
+## 3.28.2 - 21 Jan 2025
+
+No user facing changes.
+
+## 3.28.1 - 10 Jan 2025
+
+- CodeQL Action v2 is now deprecated, and is no longer updated or supported. For better performance, improved security, and new features, upgrade to v3. For more information, see [this changelog post](https://github.blog/changelog/2025-01-10-code-scanning-codeql-action-v2-is-now-deprecated/). [#2677](https://github.com/github/codeql-action/pull/2677)
+- Update default CodeQL bundle version to 2.20.1. [#2678](https://github.com/github/codeql-action/pull/2678)
+
+## 3.28.0 - 20 Dec 2024
+
+- Bump the minimum CodeQL bundle version to 2.15.5. [#2655](https://github.com/github/codeql-action/pull/2655)
+- Don't fail in the unusual case that a file is on the search path. [#2660](https://github.com/github/codeql-action/pull/2660).
+
+## 3.27.9 - 12 Dec 2024
+
+No user facing changes.
+
+## 3.27.8 - 12 Dec 2024
+
+- Fixed an issue where streaming the download and extraction of the CodeQL bundle did not respect proxy settings. [#2624](https://github.com/github/codeql-action/pull/2624)
+
+## 3.27.7 - 10 Dec 2024
+
+- We are rolling out a change in December 2024 that will extract the CodeQL bundle directly to the toolcache to improve performance. [#2631](https://github.com/github/codeql-action/pull/2631)
+- Update default CodeQL bundle version to 2.20.0. [#2636](https://github.com/github/codeql-action/pull/2636)
+
+## 3.27.6 - 03 Dec 2024
+
+- Update default CodeQL bundle version to 2.19.4. [#2626](https://github.com/github/codeql-action/pull/2626)
+
+## 3.27.5 - 19 Nov 2024
+
+No user facing changes.
+
+## 3.27.4 - 14 Nov 2024
+
+No user facing changes.
+
+## 3.27.3 - 12 Nov 2024
+
+No user facing changes.
+
+## 3.27.2 - 12 Nov 2024
+
+- Fixed an issue where setting up the CodeQL tools would sometimes fail with the message "Invalid value 'undefined' for header 'authorization'". [#2590](https://github.com/github/codeql-action/pull/2590)
+
+## 3.27.1 - 08 Nov 2024
+
+- The CodeQL Action now downloads bundles compressed using Zstandard on GitHub Enterprise Server when using Linux or macOS runners. This speeds up the installation of the CodeQL tools. This feature is already available to GitHub.com users. [#2573](https://github.com/github/codeql-action/pull/2573)
+- Update default CodeQL bundle version to 2.19.3. [#2576](https://github.com/github/codeql-action/pull/2576)
+
+## 3.27.0 - 22 Oct 2024
+
+- Bump the minimum CodeQL bundle version to 2.14.6. [#2549](https://github.com/github/codeql-action/pull/2549)
+- Fix an issue where the `upload-sarif` Action would fail with "upload-sarif post-action step failed: Input required and not supplied: token" when called in a composite Action that had a different set of inputs to the ones expected by the `upload-sarif` Action. [#2557](https://github.com/github/codeql-action/pull/2557)
+- Update default CodeQL bundle version to 2.19.2. [#2552](https://github.com/github/codeql-action/pull/2552)
+
+## 3.26.13 - 14 Oct 2024
+
+No user facing changes.
+
+## 3.26.12 - 07 Oct 2024
+
+- _Upcoming breaking change_: Add a deprecation warning for customers using CodeQL version 2.14.5 and earlier. These versions of CodeQL were discontinued on 24 September 2024 alongside GitHub Enterprise Server 3.10, and will be unsupported by CodeQL Action versions 3.27.0 and later and versions 2.27.0 and later. [#2520](https://github.com/github/codeql-action/pull/2520)
+
+  - If you are using one of these versions, please update to CodeQL CLI version 2.14.6 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+
+  - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.13.5 and 2.14.5, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.26.11` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.26.11` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
+
+## 3.26.11 - 03 Oct 2024
+
+- _Upcoming breaking change_: Add support for using `actions/download-artifact@v4` to programmatically consume CodeQL Action debug artifacts.
+
+  Starting November 30, 2024, GitHub.com customers will [no longer be able to use `actions/download-artifact@v3`](https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/). Therefore, to avoid breakage, customers who programmatically download the CodeQL Action debug artifacts should set the `CODEQL_ACTION_ARTIFACT_V4_UPGRADE` environment variable to `true` and bump `actions/download-artifact@v3` to `actions/download-artifact@v4` in their workflows. The CodeQL Action will enable this behavior by default in early November and workflows that have not yet bumped `actions/download-artifact@v3` to `actions/download-artifact@v4` will begin failing then.
+
+  This change is currently unavailable for GitHub Enterprise Server customers, as `actions/upload-artifact@v4` and `actions/download-artifact@v4` are not yet compatible with GHES.
+- Update default CodeQL bundle version to 2.19.1. [#2519](https://github.com/github/codeql-action/pull/2519)
+
+## 3.26.10 - 30 Sep 2024
+
+- We are rolling out a feature in September/October 2024 that sets up CodeQL using a bundle compressed with [Zstandard](http://facebook.github.io/zstd/). Our aim is to improve the performance of setting up CodeQL. [#2502](https://github.com/github/codeql-action/pull/2502)
+
+## 3.26.9 - 24 Sep 2024
+
+No user facing changes.
+
+## 3.26.8 - 19 Sep 2024
+
+- Update default CodeQL bundle version to 2.19.0. [#2483](https://github.com/github/codeql-action/pull/2483)
+
+## 3.26.7 - 13 Sep 2024
+
+- Update default CodeQL bundle version to 2.18.4. [#2471](https://github.com/github/codeql-action/pull/2471)
+
+## 3.26.6 - 29 Aug 2024
+
+- Update default CodeQL bundle version to 2.18.3. [#2449](https://github.com/github/codeql-action/pull/2449)
+
+## 3.26.5 - 23 Aug 2024
+
+- Fix an issue where the `csrutil` system call used for telemetry would fail on macOS ARM machines with System Integrity Protection disabled. [#2441](https://github.com/github/codeql-action/pull/2441)
+
+## 3.26.4 - 21 Aug 2024
+
+- _Deprecation:_ The `add-snippets` input on the `analyze` Action is deprecated and will be removed in the first release in August 2025. [#2436](https://github.com/github/codeql-action/pull/2436)
+- Fix an issue where the disk usage system call used for telemetry would fail on macOS ARM machines with System Integrity Protection disabled, and then surface a warning. The system call is now disabled for these machines. [#2434](https://github.com/github/codeql-action/pull/2434)
+
+## 3.26.3 - 19 Aug 2024
+
+- Fix an issue where the CodeQL Action could not write diagnostic messages on Windows. This issue did not impact analysis quality. [#2430](https://github.com/github/codeql-action/pull/2430)
+
+## 3.26.2 - 14 Aug 2024
+
+- Update default CodeQL bundle version to 2.18.2. [#2417](https://github.com/github/codeql-action/pull/2417)
+
+## 3.26.1 - 13 Aug 2024
+
+No user facing changes.
+
+## 3.26.0 - 06 Aug 2024
+
+- _Deprecation:_ Swift analysis on Ubuntu runner images is no longer supported. Please migrate to a macOS runner if this affects you. [#2403](https://github.com/github/codeql-action/pull/2403)
+- Bump the minimum CodeQL bundle version to 2.13.5. [#2408](https://github.com/github/codeql-action/pull/2408)
+
+## 3.25.15 - 26 Jul 2024
+
+- Update default CodeQL bundle version to 2.18.1. [#2385](https://github.com/github/codeql-action/pull/2385)
+
+## 3.25.14 - 25 Jul 2024
+
+- Experimental: add a new `start-proxy` action which starts the same HTTP proxy as used by [`github/dependabot-action`](https://github.com/github/dependabot-action). Do not use this in production as it is part of an internal experiment and subject to change at any time. [#2376](https://github.com/github/codeql-action/pull/2376)
+
+## 3.25.13 - 19 Jul 2024
+
+- Add `codeql-version` to outputs. [#2368](https://github.com/github/codeql-action/pull/2368)
+- Add a deprecation warning for customers using CodeQL version 2.13.4 and earlier. These versions of CodeQL were discontinued on 9 July 2024 alongside GitHub Enterprise Server 3.9, and will be unsupported by CodeQL Action versions 3.26.0 and later and versions 2.26.0 and later. [#2375](https://github.com/github/codeql-action/pull/2375)
+  - If you are using one of these versions, please update to CodeQL CLI version 2.13.5 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+  - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.12.6 and 2.13.4, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.25.13` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.25.13` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
+
+## 3.25.12 - 12 Jul 2024
+
+- Improve the reliability and performance of analyzing code when analyzing a compiled language with the `autobuild` [build mode](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages#codeql-build-modes) on GitHub Enterprise Server. This feature is already available to GitHub.com users. [#2353](https://github.com/github/codeql-action/pull/2353)
+- Update default CodeQL bundle version to 2.18.0. [#2364](https://github.com/github/codeql-action/pull/2364)
+
+## 3.25.11 - 28 Jun 2024
+
+- Avoid failing the workflow run if there is an error while uploading debug artifacts. [#2349](https://github.com/github/codeql-action/pull/2349)
+- Update default CodeQL bundle version to 2.17.6. [#2352](https://github.com/github/codeql-action/pull/2352)
+
+## 3.25.10 - 13 Jun 2024
+
+- Update default CodeQL bundle version to 2.17.5. [#2327](https://github.com/github/codeql-action/pull/2327)
+
+## 3.25.9 - 12 Jun 2024
+
+- Avoid failing database creation if the database folder already exists and contains some unexpected files. Requires CodeQL 2.18.0 or higher. [#2330](https://github.com/github/codeql-action/pull/2330)
+- The init Action will attempt to clean up the database cluster directory before creating a new database and at the end of the job. This will help to avoid issues where the database cluster directory is left in an inconsistent state. [#2332](https://github.com/github/codeql-action/pull/2332)
+
+## 3.25.8 - 04 Jun 2024
+
+- Update default CodeQL bundle version to 2.17.4. [#2321](https://github.com/github/codeql-action/pull/2321)
+
+## 3.25.7 - 31 May 2024
+
+- We are rolling out a feature in May/June 2024 that will reduce the Actions cache usage of the Action by keeping only the newest TRAP cache for each language. [#2306](https://github.com/github/codeql-action/pull/2306)
+
+## 3.25.6 - 20 May 2024
+
+- Update default CodeQL bundle version to 2.17.3. [#2295](https://github.com/github/codeql-action/pull/2295)
+
+## 3.25.5 - 13 May 2024
+
+- Add a compatibility matrix of supported CodeQL Action, CodeQL CLI, and GitHub Enterprise Server versions to the [README.md](README.md). [#2273](https://github.com/github/codeql-action/pull/2273)
+- Avoid printing out a warning for a missing `on.push` trigger when the CodeQL Action is triggered via a `workflow_call` event. [#2274](https://github.com/github/codeql-action/pull/2274)
+- The `tools: latest` input to the `init` Action has been renamed to `tools: linked`. This option specifies that the Action should use the tools shipped at the same time as the Action. The old name will continue to work for backwards compatibility, but we recommend that new workflows use the new name. [#2281](https://github.com/github/codeql-action/pull/2281)
+
+## 3.25.4 - 08 May 2024
+
+- Update default CodeQL bundle version to 2.17.2. [#2270](https://github.com/github/codeql-action/pull/2270)
+
+## 3.25.3 - 25 Apr 2024
+
+- Update default CodeQL bundle version to 2.17.1. [#2247](https://github.com/github/codeql-action/pull/2247)
+- Workflows running on `macos-latest` using CodeQL CLI versions before v2.15.1 will need to either upgrade their CLI version to v2.15.1 or newer, or change the platform to an Intel macOS runner, such as `macos-12`. ARM machines with SIP disabled, including the newest `macos-latest` image, are unsupported for CLI versions before 2.15.1. [#2261](https://github.com/github/codeql-action/pull/2261)
+
+## 3.25.2 - 22 Apr 2024
+
+No user facing changes.
+
+## 3.25.1 - 17 Apr 2024
+
+- We are rolling out a feature in April/May 2024 that improves the reliability and performance of analyzing code when analyzing a compiled language with the `autobuild` [build mode](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages#codeql-build-modes). [#2235](https://github.com/github/codeql-action/pull/2235)
+- Fix a bug where the `init` Action would fail if `--overwrite` was specified in `CODEQL_ACTION_EXTRA_OPTIONS`. [#2245](https://github.com/github/codeql-action/pull/2245)
+
+## 3.25.0 - 15 Apr 2024
+
+- The deprecated feature for extracting dependencies for a Python analysis has been removed. [#2224](https://github.com/github/codeql-action/pull/2224)
+
+  As a result, the following inputs and environment variables are now ignored:
+
+  - The `setup-python-dependencies` input to the `init` Action
+  - The `CODEQL_ACTION_DISABLE_PYTHON_DEPENDENCY_INSTALLATION` environment variable
+
+  We recommend removing any references to these from your workflows. For more information, see the release notes for CodeQL Action v3.23.0 and v2.23.0.
+- Automatically overwrite an existing database if found on the filesystem. [#2229](https://github.com/github/codeql-action/pull/2229)
+- Bump the minimum CodeQL bundle version to 2.12.6. [#2232](https://github.com/github/codeql-action/pull/2232)
+- A more relevant log message and a diagnostic are now emitted when the `file` program is not installed on a Linux runner, but is required for Go tracing to succeed. [#2234](https://github.com/github/codeql-action/pull/2234)
+
+## 3.24.10 - 05 Apr 2024
+
+- Update default CodeQL bundle version to 2.17.0. [#2219](https://github.com/github/codeql-action/pull/2219)
+- Add a deprecation warning for customers using CodeQL version 2.12.5 and earlier. These versions of CodeQL were discontinued on 26 March 2024 alongside GitHub Enterprise Server 3.8, and will be unsupported by CodeQL Action versions 3.25.0 and later and versions 2.25.0 and later. [#2220](https://github.com/github/codeql-action/pull/2220)
+  - If you are using one of these versions, please update to CodeQL CLI version 2.12.6 or later. For instance, if you have specified a custom version of the CLI using the 'tools' input to the 'init' Action, you can remove this input to use the default version.
+  - Alternatively, if you want to continue using a version of the CodeQL CLI between 2.11.6 and 2.12.5, you can replace `github/codeql-action/*@v3` by `github/codeql-action/*@v3.24.10` and `github/codeql-action/*@v2` by `github/codeql-action/*@v2.24.10` in your code scanning workflow to ensure you continue using this version of the CodeQL Action.
+
+## 3.24.9 - 22 Mar 2024
+
+- Update default CodeQL bundle version to 2.16.5. [#2203](https://github.com/github/codeql-action/pull/2203)
+
+## 3.24.8 - 18 Mar 2024
+
+- Improve the ease of debugging extraction issues by increasing the verbosity of the extractor logs when running in debug mode. [#2195](https://github.com/github/codeql-action/pull/2195)
+
+## 3.24.7 - 12 Mar 2024
+
+- Update default CodeQL bundle version to 2.16.4. [#2185](https://github.com/github/codeql-action/pull/2185)
+
+## 3.24.6 - 29 Feb 2024
+
+No user facing changes.
+
+## 3.24.5 - 23 Feb 2024
+
+- Update default CodeQL bundle version to 2.16.3. [#2156](https://github.com/github/codeql-action/pull/2156)
+
+## 3.24.4 - 21 Feb 2024
+
+- Fix an issue where an existing, but empty, `/sys/fs/cgroup/cpuset.cpus` file always resulted in a single-threaded run. [#2151](https://github.com/github/codeql-action/pull/2151)
+
+## 3.24.3 - 15 Feb 2024
+
+- Fix an issue where the CodeQL Action would fail to load a configuration specified by the `config` input to the `init` Action. [#2147](https://github.com/github/codeql-action/pull/2147)
+
+## 3.24.2 - 15 Feb 2024
+
+- Enable improved multi-threaded performance on larger runners for GitHub Enterprise Server users. This feature is already available to GitHub.com users. [#2141](https://github.com/github/codeql-action/pull/2141)
+
+## 3.24.1 - 13 Feb 2024
+
+- Update default CodeQL bundle version to 2.16.2. [#2124](https://github.com/github/codeql-action/pull/2124)
+- The CodeQL action no longer fails if it can't write to the telemetry api endpoint. [#2121](https://github.com/github/codeql-action/pull/2121)
+
+## 3.24.0 - 02 Feb 2024
+
+- CodeQL Python analysis will no longer install dependencies on GitHub Enterprise Server, as is already the case for GitHub.com. See [release notes for 3.23.0](#3230---08-jan-2024) for more details. [#2106](https://github.com/github/codeql-action/pull/2106)
 
 ## 3.23.2 - 26 Jan 2024
 

CODEOWNERS

@@ -1,3 +1 @@
 **/* @github/codeql-action-reviewers
-
-/python-setup/ @github/codeql-python @github/codeql-action-reviewers

CONTRIBUTING.md

@@ -3,6 +3,7 @@
 [fork]: https://github.com/github/codeql-action/fork
 [pr]: https://github.com/github/codeql-action/compare
 [code-of-conduct]: CODE_OF_CONDUCT.md
+[readme]: README.md#supported-versions-of-the-codeql-cli-and-github-enterprise-server
 
 Hi there! We're thrilled that you'd like to contribute to this project. Your help is essential for keeping it great.
 
@@ -26,7 +27,7 @@ You may want to run `tsc --watch` from the command line or inside of vscode in o
 
 ### Checking in compiled artifacts and `node_modules`
 
-Because CodeQL Action users consume the code directly from this repository, and there can be no build step during an GitHub Actions run, this repository contains all compiled artifacts and node modules. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
+Because CodeQL Action users consume the code directly from this repository, and there can be no build step during a GitHub Actions run, this repository contains all compiled artifacts and node modules. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
 
 Only run `npm install` if you are explicitly changing the set of dependencies in `package.json`. The `node_modules` directory should be up to date when you check out, but if for some reason, there is an inconsistency use `npm ci && npm run removeNPMAbsolutePaths` to ensure the directory is in a state consistent with the `package-lock.json`. Note that due to a macOS-specific dependency, this command should be run on a macOS machine. There is a PR check to ensure the consistency of the `node_modules` directory.
 
@@ -57,18 +58,15 @@ Here are a few things you can do that will increase the likelihood of your pull
 ## Releasing (write access required)
 
 1. The first step of releasing a new version of the `codeql-action` is running the "Update release branch" workflow.
-    This workflow goes through the pull requests that have been merged to `main` since the last release, creates a changelog, then opens a pull request to merge the changes since the last release into the `releases/v2` release branch.
+    This workflow goes through the pull requests that have been merged to `main` since the last release, creates a changelog, then opens a pull request to merge the changes since the last release into the `releases/v3` release branch.
 
     You can start a release by triggering this workflow via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
-1. The workflow run will open a pull request titled "Merge main into releases/v2". Mark the pull request as [ready for review](https://docs.github.com/en/github/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/changing-the-stage-of-a-pull-request#marking-a-pull-request-as-ready-for-review) to trigger the PR checks.
-1. Review the checklist items in the pull request description.
-    Once you've checked off all but the last two of these, approve the PR and automerge it.
-1. When the "Merge main into releases/v2" pull request is merged into the `releases/v2` branch, the "Tag release and merge back" workflow will create a mergeback PR.
-    This mergeback incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v2" pull request, and bumps the patch version of the CodeQL Action.
+1. The workflow run will open a pull request titled "Merge main into releases/v3". Follow the steps on the checklist in the pull request. Once you've checked off all but the last two of these, approve the PR and automerge it.
+1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action. 
+1. If a backport to an older major version is required, a pull request targeting that version's branch will also be automatically created.
+1. Approve the mergeback and backport pull request (if applicable) and automerge them.
 
-    Approve the mergeback PR and automerge it.
-
-Once the mergeback has been merged to `main`, the release is complete.
+Once the mergeback and backport pull request have been merged, the release is complete.
 
 ## Keeping the PR checks up to date (admin access required)
 
@@ -76,9 +74,9 @@ Since the `codeql-action` runs most of its testing through individual Actions wo
 
 1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
 2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
-3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v2`, and `v3` have been updated.
+3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
 
-Note that any updates to checks need to be backported to the `releases/v2` branch, in order to maintain the same set of names for required checks.
+Note that any updates to checks on `main` need to be backported to all currently supported major version branches, in order to maintain the same set of names for required checks.
 
 ## Deprecating a CodeQL version (write access required)
 
@@ -88,6 +86,7 @@ We typically deprecate a version of CodeQL when the GitHub Enterprise Server (GH
 1. Notify users using the old version of CodeQL about the deprecation.
     - Update `CODEQL_NEXT_MINIMUM_VERSION`, `GHES_VERSION_MOST_RECENTLY_DEPRECATED`, and `GHES_MOST_RECENT_DEPRECATION_DATE` in `src/codeql.ts` to reflect the new minimum version of CodeQL and the GHES version that has just been deprecated.
     - Add a changelog note announcing the deprecation.
+    - Update the CLI version referenced in the [readme] by adding a new row to the compatibility table.
     - Example PR: https://github.com/github/codeql-action/pull/1884
 1. Release the Action, or wait for the next scheduled release of the Action, then wait at least a week so users have time to see and act on the deprecation warning.
 1. Remove support for the old version of CodeQL.
@@ -101,10 +100,19 @@ We typically deprecate a version of CodeQL when the GitHub Enterprise Server (GH
     - Add a changelog note announcing the new minimum version of CodeQL that is now required.
     - Example PR: https://github.com/github/codeql-action/pull/1907
 
-## Deprecating a CodeQL Action version (write access required)
+## Adding a new CodeQL Action major version
 
 We sometimes maintain multiple versions of the CodeQL Action to enable customers on older but still supported versions of GitHub Enterprise Server (GHES) to continue to benefit from the latest CodeQL improvements. To accomplish this, the release process automation listens to updates to the release branch for the newest supported version.  When this branch is updated, the release process automatically opens backport PRs to update the release branches for older versions.
 
+To add a new major version of the Action:
+
+1. Change the `version` field of `package.json` by running `npm version x.y.z` where `x` is the new major version, and `y` and `z` match the latest minor and patch versions of the last release.
+1. Update appropriate documentation to explain the reasoning behind the releases: see [the diff](https://github.com/github/codeql-action/pull/2677/commits/913d60579d4b560addf53ec3c493d491dd3c1378) in our last major version deprecation for examples on which parts of the documentation should be updated.
+1. Consider the timeline behind deprecating the prior Action version: see [CodeQL Action deprecation documentation](#deprecating-a-codeql-action-major-version-write-access-required)
+1. If the new major version runs on a new version of Node, add a PR check to ensure the codebase continues to compile against the previous version of Node. See [Remove Node 16 compilation PR check](https://github.com/github/codeql-action/pull/2695) for an example.
+
+## Deprecating a CodeQL Action major version (write access required)
+
 We typically deprecate older versions of the Action once all supported GHES versions are compatible with the version of Node.js we are using on `main`.
 
 To deprecate an older version of the Action:

README.md

@@ -8,7 +8,7 @@ For a list of recent changes, see the CodeQL Action's [changelog](CHANGELOG.md).
 
 This project is released under the [MIT License](LICENSE).
 
-The underlying CodeQL CLI, used in this action, is licensed under the [GitHub CodeQL Terms and Conditions](https://securitylab.github.com/tools/codeql/license). As such, this action may be used on open source projects hosted on GitHub, and on  private repositories that are owned by an organisation with GitHub Advanced Security enabled.
+The underlying CodeQL CLI, used in this action, is licensed under the [GitHub CodeQL Terms and Conditions](https://securitylab.github.com/tools/codeql/license). As such, this action may be used on open source projects hosted on GitHub, and on private repositories that are owned by an organisation with GitHub Advanced Security enabled.
 
 ## Usage
 
@@ -16,6 +16,67 @@ We recommend using default setup to configure CodeQL analysis for your repositor
 
 You can also configure advanced setup for a repository to find security vulnerabilities in your code using a highly customizable code scanning configuration. For more information, see "[Configuring advanced setup for code scanning](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/configuring-advanced-setup-for-code-scanning)" and "[Customizing your advanced setup for code scanning](https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning)."
 
+### Actions
+
+This repository contains several actions that enable you to analyze code in your repository using CodeQL and upload the analysis to GitHub Code Scanning. Actions in this repository also allow you to upload to GitHub analyses generated by any SARIF-producing SAST tool.
+
+Actions for CodeQL analyses:
+
+- `init`: Sets up CodeQL for analysis. For information about input parameters, see the [init action definition](https://github.com/github/codeql-action/blob/main/init/action.yml).
+- `analyze`: Finalizes the CodeQL database, runs the analysis, and uploads the results to Code Scanning. For information about input parameters, see the [analyze action definition](https://github.com/github/codeql-action/blob/main/analyze/action.yml).
+
+Actions for uploading analyses generated by third-party tools:
+
+- `upload-sarif`: Uploads a SARIF file to Code Scanning. If you are using the `analyze` action, there is no reason to use this action as well. For information about input parameters, see the [upload-sarif action definition](https://github.com/github/codeql-action/blob/main/upload-sarif/action.yml).
+
+Actions with special purposes and unlikely to be used directly:
+
+- `autobuild`: Attempts to automatically build the code. Only used for analyzing languages that require a build. Use the `build-mode: autobuild` input in the `init` action instead. For information about input parameters, see the [autobuild action definition](https://github.com/github/codeql-action/blob/main/autobuild/action.yml).
+- `resolve-environment`: [Experimental] Attempts to infer a build environment suitable for automatic builds. For information about input parameters, see the [resolve-environment action definition](https://github.com/github/codeql-action/blob/main/resolve-environment/action.yml).
+- `start-proxy`: [Experimental] Start the HTTP proxy server. Internal use only and will change without notice. For information about input parameters, see the [start-proxy action definition](https://github.com/github/codeql-action/blob/main/start-proxy/action.yml).
+
+### Workflow Permissions
+
+All advanced setup code scanning workflows must have the `security-events: write` permission. Workflows in private repositories must additionally have the `contents: read` permission. For more information, see "[Assigning permissions to jobs](https://docs.github.com/en/actions/using-jobs/assigning-permissions-to-jobs)."
+
+### Build Modes
+
+The CodeQL Action supports different build modes for analyzing the source code. The available build modes are:
+
+- `none`: The database will be created without building the source code. Available for all interpreted languages and some compiled languages.
+- `autobuild`: The database will be created by attempting to automatically build the source code. Available for all compiled languages.
+- `manual`: The database will be created by building the source code using a manually specified build command. To use this build mode, specify manual build steps in your workflow between the `init` and `analyze` steps. Available for all compiled languages.
+
+#### Which build mode should I use?
+
+Interpreted languages must use `none` for the build mode.
+
+For compiled languages:
+
+- `manual` build mode will typically produce the most precise results, but it is more difficult to set up and will cause the analysis to take slightly more time to run.
+- `autobuild` build mode is simpler to set up, but will only work for projects with generic build steps that can be guessed by the heuristics of the autobuild scripts. If `autobuild` fails, then you must switch to `manual` or `none`. If `autobuild` succeeds, then the results and run time will be the same as `manual` mode.
+- `none` build mode is also simpler to set up and is slightly faster to run, but there is a possibility that some alerts will be missed. This may happen if your repository does any code generation during compilation or if there are any dependencies downloaded from registries that the workflow does not have access to. `none` is not yet supported by C/C++, Swift, Go, or Kotlin.
+
+
+## Supported versions of the CodeQL Action
+
+The following versions of the CodeQL Action are currently supported:
+
+- v3 (latest)
+
+## Supported versions of the CodeQL Bundle on GitHub Enterprise Server
+
+We typically release new minor versions of the CodeQL Action and Bundle when a new minor version of GitHub Enterprise Server (GHES) is released. When a version of GHES is deprecated, the CodeQL Action and Bundle releases that shipped with it are deprecated as well.
+
+| Minimum CodeQL Action | Minimum CodeQL Bundle Version | GitHub Environment | Notes |
+|-----------------------|-------------------------------|--------------------|-------|
+| `v3.26.6`  | `2.18.4` | Enterprise Server 3.15 | |
+| `v3.25.11` | `2.17.6` | Enterprise Server 3.14 | |
+| `v3.24.11` | `2.16.6` | Enterprise Server 3.13 | |
+| `v3.22.12` | `2.15.5` | Enterprise Server 3.12 | |
+
+See the full list of GHES release and deprecation dates at [GitHub Enterprise Server releases](https://docs.github.com/en/enterprise-server/admin/all-releases#releases-of-github-enterprise-server).
+
 ## Troubleshooting
 
 Read about [troubleshooting code scanning](https://docs.github.com/en/code-security/code-scanning/troubleshooting-code-scanning).

action.yml

@@ -0,0 +1,11 @@
+name: 'CodeQL: Stub'
+description: "Stub: Don't use this action directly. Read [the documentation](https://docs.github.com/en/code-security/code-scanning/introduction-to-code-scanning/about-code-scanning-with-codeql) instead."
+author: 'GitHub'
+runs:
+  using: 'composite'
+  steps:
+    - name: 'Stub'
+      run: |
+        echo 'This is a stub. Read [the documentation](https://docs.github.com/en/code-security/code-scanning/introduction-to-code-scanning/about-code-scanning-with-codeql) instead.'
+        exit 1
+      shell: bash

actions-extractor/codeql-extractor.yml

@@ -0,0 +1,44 @@
+name: "actions"
+aliases: []
+display_name: "GitHub Actions"
+version: 0.0.1
+column_kind: "utf16"
+unicode_newlines: true
+build_modes:
+  - none
+file_coverage_languages: []
+github_api_languages: []
+scc_languages: []
+file_types:
+  - name: workflow
+    display_name: GitHub Actions workflow files
+    extensions:
+      - .yml
+      - .yaml
+forwarded_extractor_name: javascript
+options:
+  trap:
+    title: TRAP options
+    description: Options about how the extractor handles TRAP files
+    type: object
+    visibility: 3
+    properties:
+      cache:
+        title: TRAP cache options
+        description: Options about how the extractor handles its TRAP cache
+        type: object
+        properties:
+          dir:
+            title: TRAP cache directory
+            description: The directory of the TRAP cache to use
+            type: string
+          bound:
+            title: TRAP cache bound
+            description: A soft limit (in MB) on the size of the TRAP cache
+            type: string
+            pattern: "[0-9]+"
+          write:
+            title: TRAP cache writeable
+            description: Whether to write to the TRAP cache as well as reading it
+            type: string
+            pattern: "(true|TRUE|false|FALSE)"

actions-extractor/tools/autobuild-impl.ps1

@@ -0,0 +1,40 @@
+if (($null -ne $env:LGTM_INDEX_INCLUDE) -or ($null -ne $env:LGTM_INDEX_EXCLUDE) -or ($null -ne $env:LGTM_INDEX_FILTERS)) {
+    Write-Output 'Path filters set. Passing them through to the JavaScript extractor.' 
+} else {
+    Write-Output 'No path filters set. Using the default filters.'
+    $DefaultPathFilters = @(
+        'exclude:**/*',
+        'include:.github/workflows/**/*.yml',
+        'include:.github/workflows/**/*.yaml',
+        'include:**/action.yml',
+        'include:**/action.yaml'
+    )
+
+    $env:LGTM_INDEX_FILTERS = $DefaultPathFilters -join "`n"
+}
+
+# Find the JavaScript extractor directory via `codeql resolve extractor`.
+$CodeQL = Join-Path $env:CODEQL_DIST 'codeql.exe'
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT = &$CodeQL resolve extractor --language javascript
+if ($LASTEXITCODE -ne 0) {
+    throw 'Failed to resolve JavaScript extractor.'
+}
+
+Write-Output "Found JavaScript extractor at '${env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT}'."
+
+# Run the JavaScript autobuilder.
+$JavaScriptAutoBuild = Join-Path $env:CODEQL_EXTRACTOR_JAVASCRIPT_ROOT 'tools\autobuild.cmd'
+Write-Output "Running JavaScript autobuilder at '${JavaScriptAutoBuild}'."
+
+# Copy the values of the Actions extractor environment variables to the JavaScript extractor environment variables.
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_DIAGNOSTIC_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_DIAGNOSTIC_DIR
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_LOG_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_LOG_DIR
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_SCRATCH_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SCRATCH_DIR
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_SOURCE_ARCHIVE_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_SOURCE_ARCHIVE_DIR
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_TRAP_DIR = $env:CODEQL_EXTRACTOR_ACTIONS_TRAP_DIR
+$env:CODEQL_EXTRACTOR_JAVASCRIPT_WIP_DATABASE = $env:CODEQL_EXTRACTOR_ACTIONS_WIP_DATABASE
+
+&$JavaScriptAutoBuild
+if ($LASTEXITCODE -ne 0) {
+    throw "JavaScript autobuilder failed."
+}

actions-extractor/tools/autobuild.cmd

@@ -0,0 +1,3 @@
+@echo off
+rem All of the work is done in the PowerShell script
+powershell.exe %~dp0autobuild-impl.ps1