Merge pull request #1669 from github/update-v2.3.3-318bcc7f8

Merge main into releases/v2

.github/workflows/__ml-powered-queries.yml

@@ -114,7 +114,8 @@ jobs:
       if: "!(matrix.version == 'stable-20220401' && runner.os == 'Windows')"
       with:
         sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: js/ml-powered/nosql-injection,js/ml-powered/path-injection,js/ml-powered/sql-injection,js/ml-powered/xss
+        queries-run: 
+          js/ml-powered/nosql-injection,js/ml-powered/path-injection,js/ml-powered/sql-injection,js/ml-powered/xss
         queries-not-run: foo,bar
 
     - name: Check results

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -83,7 +83,8 @@ jobs:
       uses: ./../action/.github/actions/check-sarif
       with:
         sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
         queries-not-run: foo,bar
 
     - name: Assert Results

.github/workflows/__packaging-config-inputs-js.yml

@@ -83,7 +83,8 @@ jobs:
       uses: ./../action/.github/actions/check-sarif
       with:
         sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
         queries-not-run: foo,bar
 
     - name: Assert Results

.github/workflows/__packaging-config-js.yml

@@ -82,7 +82,8 @@ jobs:
       uses: ./../action/.github/actions/check-sarif
       with:
         sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
         queries-not-run: foo,bar
 
     - name: Assert Results

.github/workflows/__packaging-inputs-js.yml

@@ -82,7 +82,8 @@ jobs:
       uses: ./../action/.github/actions/check-sarif
       with:
         sarif-file: ${{ runner.temp }}/results/javascript.sarif
-        queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+        queries-run: 
+          javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
         queries-not-run: foo,bar
 
     - name: Assert Results

CHANGELOG.md

@@ -1,5 +1,10 @@
 # CodeQL Action Changelog
 
+## 2.3.3 - 04 May 2023
+
+- Update default CodeQL bundle version to 2.13.1. [#1664](https://github.com/github/codeql-action/pull/1664)
+- You can now configure CodeQL within your code scanning workflow by passing a `config` input to the `init` Action. See [Using a custom configuration file](https://aka.ms/code-scanning-docs/config-file) for more information about configuring code scanning. [#1590](https://github.com/github/codeql-action/pull/1590)
+
 ## 2.3.2 - 27 Apr 2023
 
 No user facing changes.

README.md

@@ -135,7 +135,38 @@ By default, this will override any queries specified in a config file. If you wi
     queries: +<local-or-remote-query>,<another-query>
 ```
 
+### Configuration via `config` input
+
+You can alternatively configure CodeQL using the `config` input to the `init` Action. The value of this input must be a YAML string that follows the configuration file format documented at "[Using a custom configuration file](https://aka.ms/code-scanning-docs/config-file)."
+
+#### Example configuration
+
+```yaml
+- uses: github/codeql-action/init@v2
+  with:
+    languages: ${{ matrix.language }}
+    config: |
+      disable-default-queries: true
+      queries:
+        - uses: security-extended
+        - uses: security-and-quality
+      query-filters:
+        - include:
+      tags: /cwe-020/
+```
+
+
+#### Sharing configuration across multiple repositories
+
+You can use Actions or environment variables to share configuration across multiple repositories and to modify configuration without needing to edit the workflow file.  In the following example, `vars.CODEQL_CONF` is an [Actions configuration variable](https://docs.github.com/en/actions/learn-github-actions/variables#defining-configuration-variables-for-multiple-workflows):
+
+```yaml
+- uses: github/codeql-action/init@v2
+  with:
+    languages: ${{ matrix.language }}
+    config: ${{ vars.CODEQL_CONF }}
+```
+
 ## Troubleshooting
 
 Read about [troubleshooting code scanning](https://help.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/troubleshooting-code-scanning).
-

init/action.yml

@@ -44,6 +44,9 @@ inputs:
   db-location:
     description: Path where CodeQL databases should be created. If not specified, a temporary directory will be used.
     required: false
+  config:    
+    description: Configuration passed as a YAML string in the same format as the config-file input. This takes precedence over the config-file input.
+    required: false
   queries:
     description: Comma-separated list of additional queries to run. By default, this overrides the same setting in a configuration file; prefix with "+" to use both sets of queries.
     required: false

lib/config-utils.js

@@ -932,8 +932,17 @@ function dbLocationOrDefault(dbLocation, tempDir) {
  * This will parse the config from the user input if present, or generate
  * a default config. The parsed config is then stored to a known location.
  */
-async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
     let config;
+    // if configInput is set, it takes precedence over configFile
+    if (configInput) {
+        if (configFile) {
+            logger.warning(`Both a config file and config input were provided. Ignoring config file.`);
+        }
+        configFile = path.resolve(workspacePath, "user-config-from-action.yml");
+        fs.writeFileSync(configFile, configInput);
+        logger.debug(`Using config from action input: ${configFile}`);
+    }
     // If no config file was provided create an empty one
     if (!configFile) {
         logger.debug("No configuration file was provided");

lib/config-utils.test.js

@@ -102,8 +102,8 @@ function mockListLanguages(languages) {
                 return { packs: [] };
             },
         });
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
-        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
+        t.deepEqual(config, await configUtils.getDefaultConfig(languages, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger));
     });
 });
 (0, ava_1.default)("loading config saves config", async (t) => {
@@ -128,7 +128,7 @@ function mockListLanguages(languages) {
         t.false(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
         // Sanity check that getConfig returns undefined before we have called initConfig
         t.deepEqual(await configUtils.getConfig(tmpDir, logger), undefined);
-        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
+        const config1 = await configUtils.initConfig("javascript,python", undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), logger);
         // The saved config file should now exist
         t.true(fs.existsSync(configUtils.getPathToParsedConfigFile(tmpDir)));
         // And that same newly-initialised config should now be returned by getConfig
@@ -144,7 +144,7 @@ function mockListLanguages(languages) {
 (0, ava_1.default)("load input outside of workspace", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, "../input", undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, "../input", undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -157,7 +157,7 @@ function mockListLanguages(languages) {
         // no filename given, just a repo
         const configFile = "octo-org/codeql-config@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -171,7 +171,7 @@ function mockListLanguages(languages) {
         const configFile = "input";
         t.false(fs.existsSync(path.join(tmpDir, configFile)));
         try {
-            await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -247,7 +247,7 @@ function mockListLanguages(languages) {
         };
         const languages = "javascript";
         const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "my-artifact", "my-db", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const actualConfig = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "my-artifact", "my-db", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Should exactly equal the object we constructed earlier
         t.deepEqual(actualConfig, expectedConfig);
     });
@@ -286,7 +286,7 @@ function mockListLanguages(languages) {
         fs.mkdirSync(path.join(tmpDir, "foo"));
         const languages = "javascript";
         const configFilePath = createConfigFile(inputFileContents, tmpDir);
-        await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolve queries was called correctly
         t.deepEqual(resolveQueriesArgs.length, 1);
         t.deepEqual(resolveQueriesArgs[0].queries, [
@@ -332,7 +332,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries
         // and once for `./foo` from the config file.
@@ -368,7 +368,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries and once for `./override`,
         // but won't be called for './foo' from the config file.
@@ -403,7 +403,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for `./workflow-query`,
         // but won't be called for the default one since that was disabled
@@ -432,7 +432,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly:
         // It'll be called once for the default queries,
         // and then once for each of the two queries from the workflow
@@ -474,7 +474,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, testQueries, undefined, undefined, configFilePath, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries,
         // once for each of additional1 and additional2,
@@ -495,6 +495,97 @@ function queriesToResolvedQueryForm(queries) {
         t.true(config.queries["javascript"].custom[2].queries[0].endsWith(`${path.sep}foo`));
     });
 });
+(0, ava_1.default)("Queries can be specified using config input", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        const configInput = `
+      name: my config
+      queries:
+        - uses: ./foo
+      packs:
+        javascript:
+          - a/b@1.2.3
+        python:
+          - c/d@1.2.3
+    `;
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        const resolveQueriesArgs = [];
+        const codeQL = (0, codeql_1.setCodeQL)({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+            async packDownload() {
+                return { packs: [] };
+            },
+        });
+        // Only JS, python packs will be ignored
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, configInput, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for the default queries
+        // and once for `./foo` from the config file.
+        t.deepEqual(resolveQueriesArgs.length, 2);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
+        t.deepEqual(config.packs, {
+            [languages_1.Language.javascript]: ["a/b@1.2.3"],
+        });
+        // Now check that the end result contains the default queries and the query from config
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 1);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
+    });
+});
+(0, ava_1.default)("Using config input and file together, config input should be used.", async (t) => {
+    return await util.withTmpDir(async (tmpDir) => {
+        process.env["RUNNER_TEMP"] = tmpDir;
+        process.env["GITHUB_WORKSPACE"] = tmpDir;
+        const inputFileContents = `
+      name: my config
+      queries:
+        - uses: ./foo_file`;
+        const configFilePath = createConfigFile(inputFileContents, tmpDir);
+        const configInput = `
+      name: my config
+      queries:
+        - uses: ./foo
+      packs:
+        javascript:
+          - a/b@1.2.3
+        python:
+          - c/d@1.2.3
+    `;
+        fs.mkdirSync(path.join(tmpDir, "foo"));
+        const resolveQueriesArgs = [];
+        const codeQL = (0, codeql_1.setCodeQL)({
+            async resolveQueries(queries, extraSearchPath) {
+                resolveQueriesArgs.push({ queries, extraSearchPath });
+                return queriesToResolvedQueryForm(queries);
+            },
+            async packDownload() {
+                return { packs: [] };
+            },
+        });
+        // Only JS, python packs will be ignored
+        const languages = "javascript";
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, configFilePath, configInput, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        // Check resolveQueries was called correctly
+        // It'll be called once for the default queries
+        // and once for `./foo` from the config file.
+        t.deepEqual(resolveQueriesArgs.length, 2);
+        t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+        t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
+        t.deepEqual(config.packs, {
+            [languages_1.Language.javascript]: ["a/b@1.2.3"],
+        });
+        // Now check that the end result contains the default queries and the query from config
+        t.deepEqual(config.queries["javascript"].builtin.length, 1);
+        t.deepEqual(config.queries["javascript"].custom.length, 1);
+        t.true(config.queries["javascript"].builtin[0].endsWith("javascript-code-scanning.qls"));
+        t.true(config.queries["javascript"].custom[0].queries[0].endsWith(`${path.sep}foo`));
+    });
+});
 (0, ava_1.default)("Invalid queries in workflow file handled correctly", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         const queries = "foo/bar@v1@v3";
@@ -516,7 +607,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         try {
-            await configUtils.initConfig(languages, queries, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, queries, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             t.fail("initConfig did not throw error");
         }
         catch (err) {
@@ -562,7 +653,7 @@ function queriesToResolvedQueryForm(queries) {
         fs.mkdirSync(path.join(tmpDir, "foo/bar/dev"), { recursive: true });
         const configFile = "octo-org/codeql-config/config.yaml@main";
         const languages = "javascript";
-        await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         t.assert(spyGetContents.called);
     });
 });
@@ -572,7 +663,7 @@ function queriesToResolvedQueryForm(queries) {
         mockGetContents(dummyResponse);
         const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -588,7 +679,7 @@ function queriesToResolvedQueryForm(queries) {
         mockGetContents(dummyResponse);
         const repoReference = "octo-org/codeql-config/config.yaml@main";
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, repoReference, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -608,7 +699,7 @@ function queriesToResolvedQueryForm(queries) {
             },
         });
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(undefined, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -620,7 +711,7 @@ function queriesToResolvedQueryForm(queries) {
     return await util.withTmpDir(async (tmpDir) => {
         const languages = "rubbish,english";
         try {
-            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+            await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, (0, codeql_1.getCachedCodeQL)(), tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
             throw new Error("initConfig did not throw error");
         }
         catch (err) {
@@ -651,7 +742,7 @@ function queriesToResolvedQueryForm(queries) {
         const configFile = path.join(tmpDir, "codeql-config.yaml");
         fs.writeFileSync(configFile, inputFileContents);
         const languages = "javascript";
-        const { packs } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const { packs } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         t.deepEqual(packs, {
             [languages_1.Language.javascript]: ["a/b@1.2.3"],
         });
@@ -688,7 +779,7 @@ function queriesToResolvedQueryForm(queries) {
         fs.writeFileSync(configFile, inputFileContents);
         fs.mkdirSync(path.join(tmpDir, "foo"));
         const languages = "javascript,python,cpp";
-        const { packs, queries } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const { packs, queries } = await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         t.deepEqual(packs, {
             [languages_1.Language.javascript]: ["a/b@1.2.3"],
             [languages_1.Language.python]: ["c/d@1.2.3"],
@@ -734,7 +825,7 @@ function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGen
             const inputFile = path.join(tmpDir, configFile);
             fs.writeFileSync(inputFile, inputFileContents, "utf8");
             try {
-                await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+                await configUtils.initConfig(languages, undefined, undefined, undefined, configFile, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
                 throw new Error("initConfig did not throw error");
             }
             catch (err) {
@@ -991,7 +1082,7 @@ const mlPoweredQueriesMacro = ava_1.default.macro({
                     return { packs: [] };
                 },
             });
-            const { packs } = await configUtils.initConfig("javascript", queriesInput, packsInput, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)(isMlPoweredQueriesEnabled ? [feature_flags_1.Feature.MlPoweredQueriesEnabled] : []), (0, logging_1.getRunnerLogger)(true));
+            const { packs } = await configUtils.initConfig("javascript", queriesInput, packsInput, undefined, undefined, undefined, undefined, false, false, "", "", { owner: "github", repo: "example" }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)(isMlPoweredQueriesEnabled ? [feature_flags_1.Feature.MlPoweredQueriesEnabled] : []), (0, logging_1.getRunnerLogger)(true));
             if (expectedVersionString !== undefined) {
                 t.deepEqual(packs, {
                     [languages_1.Language.javascript]: [

lib/defaults.json

@@ -1,6 +1,6 @@
 {
-    "bundleVersion": "codeql-bundle-20230414",
-    "cliVersion": "2.13.0",
-    "priorBundleVersion": "codeql-bundle-20230403",
-    "priorCliVersion": "2.12.6"
+    "bundleVersion": "codeql-bundle-20230428",
+    "cliVersion": "2.13.1",
+    "priorBundleVersion": "codeql-bundle-20230414",
+    "priorCliVersion": "2.13.0"
 }

lib/init-action.js

@@ -128,7 +128,7 @@ async function run() {
         toolsDownloadDurationMs = initCodeQLResult.toolsDownloadDurationMs;
         toolsVersion = initCodeQLResult.toolsVersion;
         toolsSource = initCodeQLResult.toolsSource;
-        config = await (0, init_1.initConfig)((0, actions_util_1.getOptionalInput)("languages"), (0, actions_util_1.getOptionalInput)("queries"), (0, actions_util_1.getOptionalInput)("packs"), registriesInput, (0, actions_util_1.getOptionalInput)("config-file"), (0, actions_util_1.getOptionalInput)("db-location"), getTrapCachingEnabled(), 
+        config = await (0, init_1.initConfig)((0, actions_util_1.getOptionalInput)("languages"), (0, actions_util_1.getOptionalInput)("queries"), (0, actions_util_1.getOptionalInput)("packs"), registriesInput, (0, actions_util_1.getOptionalInput)("config-file"), (0, actions_util_1.getOptionalInput)("db-location"), (0, actions_util_1.getOptionalInput)("config"), getTrapCachingEnabled(), 
         // Debug mode is enabled if:
         // - The `init` Action is passed `debug: true`.
         // - Actions step debugging is enabled (e.g. by [enabling debug logging for a rerun](https://docs.github.com/en/actions/managing-workflow-runs/re-running-workflows-and-jobs#re-running-all-the-jobs-in-a-workflow),

lib/init.js

@@ -48,9 +48,9 @@ async function initCodeQL(toolsInput, apiDetails, tempDir, variant, defaultCliVe
     return { codeql, toolsDownloadDurationMs, toolsSource, toolsVersion };
 }
 exports.initCodeQL = initCodeQL;
-async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
+async function initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger) {
     logger.startGroup("Load language configuration");
-    const config = await configUtils.initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger);
+    const config = await configUtils.initConfig(languagesInput, queriesInput, packsInput, registriesInput, configFile, dbLocation, configInput, trapCachingEnabled, debugMode, debugArtifactName, debugDatabaseName, repository, tempDir, codeQL, workspacePath, gitHubVersion, apiDetails, features, logger);
     analysisPaths.printPathFiltersWarning(config, logger);
     logger.endGroup();
     return config;

lib/init.js.map

@@ -1 +1 @@
-{"version":3,"file":"init.js","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,yEAA2D;AAC3D,kEAAoD;AAEpD,gEAAkD;AAElD,qCAA+C;AAC/C,4DAA8C;AAI9C,mDAAwE;AACxE,6CAA+B;AAE/B,IAAY,WAKX;AALD,WAAY,WAAW;IACrB,kCAAmB,CAAA;IACnB,8BAAe,CAAA;IACf,sCAAuB,CAAA;IACvB,oCAAqB,CAAA;AACvB,CAAC,EALW,WAAW,GAAX,mBAAW,KAAX,mBAAW,QAKtB;AAEM,KAAK,UAAU,UAAU,CAC9B,UAA8B,EAC9B,UAA4B,EAC5B,OAAe,EACf,OAA2B,EAC3B,iBAA2C,EAC3C,MAAc;IAOd,MAAM,CAAC,UAAU,CAAC,oBAAoB,CAAC,CAAC;IACxC,MAAM,EAAE,MAAM,EAAE,uBAAuB,EAAE,WAAW,EAAE,YAAY,EAAE,GAClE,MAAM,IAAA,oBAAW,EACf,UAAU,EACV,UAAU,EACV,OAAO,EACP,OAAO,EACP,iBAAiB,EACjB,MAAM,EACN,IAAI,CACL,CAAC;IACJ,MAAM,MAAM,CAAC,YAAY,EAAE,CAAC;IAC5B,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,uBAAuB,EAAE,WAAW,EAAE,YAAY,EAAE,CAAC;AACxE,CAAC;AA3BD,gCA2BC;AAEM,KAAK,UAAU,UAAU,CAC9B,cAAkC,EAClC,YAAgC,EAChC,UAA8B,EAC9B,eAAmC,EACnC,UAA8B,EAC9B,UAA8B,EAC9B,kBAA2B,EAC3B,SAAkB,EAClB,iBAAyB,EACzB,iBAAyB,EACzB,UAAyB,EACzB,OAAe,EACf,MAAc,EACd,aAAqB,EACrB,aAAiC,EACjC,UAAoC,EACpC,QAA2B,EAC3B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,6BAA6B,CAAC,CAAC;IACjD,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,UAAU,CACzC,cAAc,EACd,YAAY,EACZ,UAAU,EACV,eAAe,EACf,UAAU,EACV,UAAU,EACV,kBAAkB,EAClB,SAAS,EACT,iBAAiB,EACjB,iBAAiB,EACjB,UAAU,EACV,OAAO,EACP,MAAM,EACN,aAAa,EACb,aAAa,EACb,UAAU,EACV,QAAQ,EACR,MAAM,CACP,CAAC;IACF,aAAa,CAAC,uBAAuB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACtD,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,MAAM,CAAC;AAChB,CAAC;AA5CD,gCA4CC;AAEM,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAA0B,EAC1B,UAAkB,EAClB,WAA+B,EAC/B,eAAmC,EACnC,QAA2B,EAC3B,UAAoC,EACpC,MAAc;IAEd,EAAE,CAAC,SAAS,CAAC,MAAM,CAAC,UAAU,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAErD,IAAI;QACF,wFAAwF;QACxF,qBAAqB;QACrB,8FAA8F;QAC9F,2FAA2F;QAC3F,IAAI,oBAAwC,CAAC;QAC7C,IAAI,YAAgC,CAAC;QACrC,IAAI,MAAM,IAAI,CAAC,0BAA0B,CAAC,MAAM,EAAE,QAAQ,CAAC,EAAE;YAC3D,CAAC,EAAE,oBAAoB,EAAE,YAAY,EAAE;gBACrC,MAAM,WAAW,CAAC,kBAAkB,CAClC,eAAe,EACf,MAAM,EACN,MAAM,CAAC,OAAO,EACd,MAAM,CACP,CAAC,CAAC;SACN;QACD,MAAM,WAAW,CAAC,eAAe,CAC/B;YACE,YAAY,EAAE,UAAU,CAAC,IAAI;YAC7B,sBAAsB,EAAE,oBAAoB;SAC7C;QAED,0BAA0B;QAC1B,KAAK,IAAI,EAAE,CACT,MAAM,MAAM,CAAC,mBAAmB,CAC9B,MAAM,EACN,UAAU,EACV,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,MAAM,CACP,CACJ,CAAC;KACH;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,YAAY,CAAC,CAAC,CAAC,CAAC;KACvB;IACD,OAAO,MAAM,IAAA,uCAAuB,EAAC,MAAM,CAAC,CAAC;AAC/C,CAAC;AAjDD,0BAiDC;AAED;;;;;;;;GAQG;AACH,SAAS,YAAY,CAAC,CAAM;IAC1B,IAAI,CAAC,CAAC,CAAC,YAAY,KAAK,CAAC,EAAE;QACzB,OAAO,CAAC,CAAC;KACV;IAED;IACE,2BAA2B;IAC3B,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,8BAA8B,CAAC;QACnD,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,uCAAuC,CAAC,EAC5D;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CACvB,sDAAsD,CAAC,CAAC,OAAO,EAAE,CAClE,CAAC;KACH;IAED;IACE,+EAA+E;IAC/E,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,wCAAwC,CAAC;QAC7D,gEAAgE;QAChE,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,qBAAqB,CAAC,EAC1C;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACtC;IAED,OAAO,CAAC,CAAC;AACX,CAAC;AAEM,KAAK,UAAU,iBAAiB,CAAC,MAAc,EAAE,MAAc;IACpE,MAAM,CAAC,UAAU,CAAC,2BAA2B,CAAC,CAAC;IAE/C,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,iBAAiB,CAAC,CAAC;IAEjE,IAAI;QACF,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE;gBACvE,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,mBAAmB,CAAC;aAC9C,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAC7B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,kBAAkB,CAAC,CAC7C,CAAC,IAAI,EAAE,CAAC;SACV;QACD,MAAM,MAAM,GAAG,0BAA0B,CAAC;QAC1C,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE;gBAC/D,IAAI;gBACJ,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;gBACpE,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;KACF;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,CAAC,QAAQ,EAAE,CAAC;QAClB,MAAM,CAAC,OAAO,CACZ,gFAAgF,CAAC,IAAI;YACnF,qGAAqG;YACrG,oGAAoG;YACpG,iDAAiD,CACpD,CAAC;QACF,OAAO;KACR;IACD,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AAzCD,8CAyCC"}
+{"version":3,"file":"init.js","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,yEAA2D;AAC3D,kEAAoD;AAEpD,gEAAkD;AAElD,qCAA+C;AAC/C,4DAA8C;AAI9C,mDAAwE;AACxE,6CAA+B;AAE/B,IAAY,WAKX;AALD,WAAY,WAAW;IACrB,kCAAmB,CAAA;IACnB,8BAAe,CAAA;IACf,sCAAuB,CAAA;IACvB,oCAAqB,CAAA;AACvB,CAAC,EALW,WAAW,GAAX,mBAAW,KAAX,mBAAW,QAKtB;AAEM,KAAK,UAAU,UAAU,CAC9B,UAA8B,EAC9B,UAA4B,EAC5B,OAAe,EACf,OAA2B,EAC3B,iBAA2C,EAC3C,MAAc;IAOd,MAAM,CAAC,UAAU,CAAC,oBAAoB,CAAC,CAAC;IACxC,MAAM,EAAE,MAAM,EAAE,uBAAuB,EAAE,WAAW,EAAE,YAAY,EAAE,GAClE,MAAM,IAAA,oBAAW,EACf,UAAU,EACV,UAAU,EACV,OAAO,EACP,OAAO,EACP,iBAAiB,EACjB,MAAM,EACN,IAAI,CACL,CAAC;IACJ,MAAM,MAAM,CAAC,YAAY,EAAE,CAAC;IAC5B,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,uBAAuB,EAAE,WAAW,EAAE,YAAY,EAAE,CAAC;AACxE,CAAC;AA3BD,gCA2BC;AAEM,KAAK,UAAU,UAAU,CAC9B,cAAkC,EAClC,YAAgC,EAChC,UAA8B,EAC9B,eAAmC,EACnC,UAA8B,EAC9B,UAA8B,EAC9B,WAA+B,EAC/B,kBAA2B,EAC3B,SAAkB,EAClB,iBAAyB,EACzB,iBAAyB,EACzB,UAAyB,EACzB,OAAe,EACf,MAAc,EACd,aAAqB,EACrB,aAAiC,EACjC,UAAoC,EACpC,QAA2B,EAC3B,MAAc;IAEd,MAAM,CAAC,UAAU,CAAC,6BAA6B,CAAC,CAAC;IACjD,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,UAAU,CACzC,cAAc,EACd,YAAY,EACZ,UAAU,EACV,eAAe,EACf,UAAU,EACV,UAAU,EACV,WAAW,EACX,kBAAkB,EAClB,SAAS,EACT,iBAAiB,EACjB,iBAAiB,EACjB,UAAU,EACV,OAAO,EACP,MAAM,EACN,aAAa,EACb,aAAa,EACb,UAAU,EACV,QAAQ,EACR,MAAM,CACP,CAAC;IACF,aAAa,CAAC,uBAAuB,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACtD,MAAM,CAAC,QAAQ,EAAE,CAAC;IAClB,OAAO,MAAM,CAAC;AAChB,CAAC;AA9CD,gCA8CC;AAEM,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAA0B,EAC1B,UAAkB,EAClB,WAA+B,EAC/B,eAAmC,EACnC,QAA2B,EAC3B,UAAoC,EACpC,MAAc;IAEd,EAAE,CAAC,SAAS,CAAC,MAAM,CAAC,UAAU,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACrD,IAAI;QACF,wFAAwF;QACxF,qBAAqB;QACrB,8FAA8F;QAC9F,2FAA2F;QAC3F,IAAI,oBAAwC,CAAC;QAC7C,IAAI,YAAgC,CAAC;QACrC,IAAI,MAAM,IAAI,CAAC,0BAA0B,CAAC,MAAM,EAAE,QAAQ,CAAC,EAAE;YAC3D,CAAC,EAAE,oBAAoB,EAAE,YAAY,EAAE;gBACrC,MAAM,WAAW,CAAC,kBAAkB,CAClC,eAAe,EACf,MAAM,EACN,MAAM,CAAC,OAAO,EACd,MAAM,CACP,CAAC,CAAC;SACN;QACD,MAAM,WAAW,CAAC,eAAe,CAC/B;YACE,YAAY,EAAE,UAAU,CAAC,IAAI;YAC7B,sBAAsB,EAAE,oBAAoB;SAC7C;QAED,0BAA0B;QAC1B,KAAK,IAAI,EAAE,CACT,MAAM,MAAM,CAAC,mBAAmB,CAC9B,MAAM,EACN,UAAU,EACV,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,MAAM,CACP,CACJ,CAAC;KACH;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,YAAY,CAAC,CAAC,CAAC,CAAC;KACvB;IACD,OAAO,MAAM,IAAA,uCAAuB,EAAC,MAAM,CAAC,CAAC;AAC/C,CAAC;AAhDD,0BAgDC;AAED;;;;;;;;GAQG;AACH,SAAS,YAAY,CAAC,CAAM;IAC1B,IAAI,CAAC,CAAC,CAAC,YAAY,KAAK,CAAC,EAAE;QACzB,OAAO,CAAC,CAAC;KACV;IAED;IACE,2BAA2B;IAC3B,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,8BAA8B,CAAC;QACnD,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,uCAAuC,CAAC,EAC5D;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CACvB,sDAAsD,CAAC,CAAC,OAAO,EAAE,CAClE,CAAC;KACH;IAED;IACE,+EAA+E;IAC/E,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,wCAAwC,CAAC;QAC7D,gEAAgE;QAChE,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,qBAAqB,CAAC,EAC1C;QACA,OAAO,IAAI,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACtC;IAED,OAAO,CAAC,CAAC;AACX,CAAC;AAEM,KAAK,UAAU,iBAAiB,CAAC,MAAc,EAAE,MAAc;IACpE,MAAM,CAAC,UAAU,CAAC,2BAA2B,CAAC,CAAC;IAE/C,MAAM,aAAa,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,iBAAiB,CAAC,CAAC;IAEjE,IAAI;QACF,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,YAAY,CAAC,EAAE;gBACvE,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,mBAAmB,CAAC;aAC9C,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAC7B,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,kBAAkB,CAAC,CAC7C,CAAC,IAAI,EAAE,CAAC;SACV;QACD,MAAM,MAAM,GAAG,0BAA0B,CAAC;QAC1C,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;YAChC,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE;gBAC/D,IAAI;gBACJ,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;aAAM;YACL,MAAM,IAAI,UAAU,CAAC,UAAU,CAAC,MAAM,SAAS,CAAC,SAAS,CAAC,SAAS,CAAC,EAAE;gBACpE,IAAI;gBACJ,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,MAAM,CAAC;gBAChC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;aAC/B,CAAC,CAAC,IAAI,EAAE,CAAC;SACX;KACF;IAAC,OAAO,CAAC,EAAE;QACV,MAAM,CAAC,QAAQ,EAAE,CAAC;QAClB,MAAM,CAAC,OAAO,CACZ,gFAAgF,CAAC,IAAI;YACnF,qGAAqG;YACrG,oGAAoG;YACpG,iDAAiD,CACpD,CAAC;QACF,OAAO;KACR;IACD,MAAM,CAAC,QAAQ,EAAE,CAAC;AACpB,CAAC;AAzCD,8CAyCC"}

node_modules/.package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "2.3.2",
+  "version": "2.3.3",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {

package-lock.json

@@ -1,12 +1,12 @@
 {
   "name": "codeql",
-  "version": "2.3.2",
+  "version": "2.3.3",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "codeql",
-      "version": "2.3.2",
+      "version": "2.3.3",
       "license": "MIT",
       "dependencies": {
         "@actions/artifact": "^1.1.0",

package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql",
-  "version": "2.3.2",
+  "version": "2.3.3",
   "private": true,
   "description": "CodeQL action",
   "scripts": {

src/config-utils.test.ts

@@ -105,11 +105,12 @@ test("load empty config", async (t) => {
       undefined,
       undefined,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -130,7 +131,7 @@ test("load empty config", async (t) => {
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         codeQL,
         tmpDir,
@@ -176,11 +177,12 @@ test("loading config saves config", async (t) => {
       undefined,
       undefined,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -214,11 +216,12 @@ test("load input outside of workspace", async (t) => {
         undefined,
         "../input",
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -254,11 +257,12 @@ test("load non-local input with invalid repo syntax", async (t) => {
         undefined,
         configFile,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -295,11 +299,12 @@ test("load non-existent input", async (t) => {
         undefined,
         configFile,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -402,11 +407,12 @@ test("load non-empty input", async (t) => {
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "my-artifact",
       "my-db",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -473,11 +479,12 @@ test("Default queries are used", async (t) => {
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -552,11 +559,12 @@ test("Queries can be specified in config file", async (t) => {
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -630,11 +638,12 @@ test("Queries from config file can be overridden in workflow file", async (t) =>
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -706,11 +715,12 @@ test("Queries in workflow file can be used in tandem with the 'disable default q
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -773,11 +783,12 @@ test("Multiple queries can be specified in workflow file, no config file require
       undefined,
       undefined,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -861,11 +872,12 @@ test("Queries in workflow file can be added to the set of queries without overri
       undefined,
       configFilePath,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -913,6 +925,181 @@ test("Queries in workflow file can be added to the set of queries without overri
   });
 });
 
+test("Queries can be specified using config input", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    const configInput = `
+      name: my config
+      queries:
+        - uses: ./foo
+      packs:
+        javascript:
+          - a/b@1.2.3
+        python:
+          - c/d@1.2.3
+    `;
+
+    fs.mkdirSync(path.join(tmpDir, "foo"));
+
+    const resolveQueriesArgs: Array<{
+      queries: string[];
+      extraSearchPath: string | undefined;
+    }> = [];
+    const codeQL = setCodeQL({
+      async resolveQueries(
+        queries: string[],
+        extraSearchPath: string | undefined
+      ) {
+        resolveQueriesArgs.push({ queries, extraSearchPath });
+        return queriesToResolvedQueryForm(queries);
+      },
+      async packDownload(): Promise<PackDownloadOutput> {
+        return { packs: [] };
+      },
+    });
+
+    // Only JS, python packs will be ignored
+    const languages = "javascript";
+
+    const config = await configUtils.initConfig(
+      languages,
+      undefined,
+      undefined,
+      undefined,
+      undefined,
+      undefined,
+      configInput,
+      false,
+      false,
+      "",
+      "",
+      { owner: "github", repo: "example" },
+      tmpDir,
+      codeQL,
+      tmpDir,
+      gitHubVersion,
+      sampleApiDetails,
+      createFeatures([]),
+      getRunnerLogger(true)
+    );
+
+    // Check resolveQueries was called correctly
+    // It'll be called once for the default queries
+    // and once for `./foo` from the config file.
+    t.deepEqual(resolveQueriesArgs.length, 2);
+    t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+    t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
+    t.deepEqual(config.packs as unknown, {
+      [Language.javascript]: ["a/b@1.2.3"],
+    });
+
+    // Now check that the end result contains the default queries and the query from config
+    t.deepEqual(config.queries["javascript"].builtin.length, 1);
+    t.deepEqual(config.queries["javascript"].custom.length, 1);
+    t.true(
+      config.queries["javascript"].builtin[0].endsWith(
+        "javascript-code-scanning.qls"
+      )
+    );
+    t.true(
+      config.queries["javascript"].custom[0].queries[0].endsWith(
+        `${path.sep}foo`
+      )
+    );
+  });
+});
+
+test("Using config input and file together, config input should be used.", async (t) => {
+  return await util.withTmpDir(async (tmpDir) => {
+    process.env["RUNNER_TEMP"] = tmpDir;
+    process.env["GITHUB_WORKSPACE"] = tmpDir;
+
+    const inputFileContents = `
+      name: my config
+      queries:
+        - uses: ./foo_file`;
+    const configFilePath = createConfigFile(inputFileContents, tmpDir);
+
+    const configInput = `
+      name: my config
+      queries:
+        - uses: ./foo
+      packs:
+        javascript:
+          - a/b@1.2.3
+        python:
+          - c/d@1.2.3
+    `;
+
+    fs.mkdirSync(path.join(tmpDir, "foo"));
+
+    const resolveQueriesArgs: Array<{
+      queries: string[];
+      extraSearchPath: string | undefined;
+    }> = [];
+    const codeQL = setCodeQL({
+      async resolveQueries(
+        queries: string[],
+        extraSearchPath: string | undefined
+      ) {
+        resolveQueriesArgs.push({ queries, extraSearchPath });
+        return queriesToResolvedQueryForm(queries);
+      },
+      async packDownload(): Promise<PackDownloadOutput> {
+        return { packs: [] };
+      },
+    });
+
+    // Only JS, python packs will be ignored
+    const languages = "javascript";
+
+    const config = await configUtils.initConfig(
+      languages,
+      undefined,
+      undefined,
+      undefined,
+      undefined,
+      configFilePath,
+      configInput,
+      false,
+      false,
+      "",
+      "",
+      { owner: "github", repo: "example" },
+      tmpDir,
+      codeQL,
+      tmpDir,
+      gitHubVersion,
+      sampleApiDetails,
+      createFeatures([]),
+      getRunnerLogger(true)
+    );
+
+    // Check resolveQueries was called correctly
+    // It'll be called once for the default queries
+    // and once for `./foo` from the config file.
+    t.deepEqual(resolveQueriesArgs.length, 2);
+    t.deepEqual(resolveQueriesArgs[1].queries.length, 1);
+    t.true(resolveQueriesArgs[1].queries[0].endsWith(`${path.sep}foo`));
+    t.deepEqual(config.packs as unknown, {
+      [Language.javascript]: ["a/b@1.2.3"],
+    });
+
+    // Now check that the end result contains the default queries and the query from config
+    t.deepEqual(config.queries["javascript"].builtin.length, 1);
+    t.deepEqual(config.queries["javascript"].custom.length, 1);
+    t.true(
+      config.queries["javascript"].builtin[0].endsWith(
+        "javascript-code-scanning.qls"
+      )
+    );
+    t.true(
+      config.queries["javascript"].custom[0].queries[0].endsWith(
+        `${path.sep}foo`
+      )
+    );
+  });
+});
+
 test("Invalid queries in workflow file handled correctly", async (t) => {
   return await util.withTmpDir(async (tmpDir) => {
     const queries = "foo/bar@v1@v3";
@@ -943,11 +1130,12 @@ test("Invalid queries in workflow file handled correctly", async (t) => {
         undefined,
         undefined,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         codeQL,
         tmpDir,
@@ -1015,11 +1203,12 @@ test("API client used when reading remote config", async (t) => {
       undefined,
       configFile,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -1046,11 +1235,12 @@ test("Remote config handles the case where a directory is provided", async (t) =
         undefined,
         repoReference,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -1085,11 +1275,12 @@ test("Invalid format of remote config handled correctly", async (t) => {
         undefined,
         repoReference,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -1128,11 +1319,12 @@ test("No detected languages", async (t) => {
         undefined,
         undefined,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         codeQL,
         tmpDir,
@@ -1160,11 +1352,12 @@ test("Unknown languages", async (t) => {
         undefined,
         undefined,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         getCachedCodeQL(),
         tmpDir,
@@ -1217,11 +1410,12 @@ test("Config specifies packages", async (t) => {
       undefined,
       configFile,
       undefined,
+      undefined,
       false,
       false,
       "",
       "",
-      { owner: "github", repo: "example " },
+      { owner: "github", repo: "example" },
       tmpDir,
       codeQL,
       tmpDir,
@@ -1278,6 +1472,7 @@ test("Config specifies packages for multiple languages", async (t) => {
       undefined,
       configFile,
       undefined,
+      undefined,
       false,
       false,
       "",
@@ -1350,11 +1545,12 @@ function doInvalidInputTest(
           undefined,
           configFile,
           undefined,
+          undefined,
           false,
           false,
           "",
           "",
-          { owner: "github", repo: "example " },
+          { owner: "github", repo: "example" },
           tmpDir,
           codeQL,
           tmpDir,
@@ -1934,11 +2130,12 @@ const mlPoweredQueriesMacro = test.macro({
         undefined,
         undefined,
         undefined,
+        undefined,
         false,
         false,
         "",
         "",
-        { owner: "github", repo: "example " },
+        { owner: "github", repo: "example" },
         tmpDir,
         codeQL,
         tmpDir,

src/config-utils.ts

@@ -1690,6 +1690,7 @@ export async function initConfig(
   registriesInput: string | undefined,
   configFile: string | undefined,
   dbLocation: string | undefined,
+  configInput: string | undefined,
   trapCachingEnabled: boolean,
   debugMode: boolean,
   debugArtifactName: string,
@@ -1705,6 +1706,18 @@ export async function initConfig(
 ): Promise<Config> {
   let config: Config;
 
+  // if configInput is set, it takes precedence over configFile
+  if (configInput) {
+    if (configFile) {
+      logger.warning(
+        `Both a config file and config input were provided. Ignoring config file.`
+      );
+    }
+    configFile = path.resolve(workspacePath, "user-config-from-action.yml");
+    fs.writeFileSync(configFile, configInput);
+    logger.debug(`Using config from action input: ${configFile}`);
+  }
+
   // If no config file was provided create an empty one
   if (!configFile) {
     logger.debug("No configuration file was provided");

src/defaults.json

@@ -1,6 +1,6 @@
 {
-  "bundleVersion": "codeql-bundle-20230414",
-  "cliVersion": "2.13.0",
-  "priorBundleVersion": "codeql-bundle-20230403",
-  "priorCliVersion": "2.12.6"
+  "bundleVersion": "codeql-bundle-20230428",
+  "cliVersion": "2.13.1",
+  "priorBundleVersion": "codeql-bundle-20230414",
+  "priorCliVersion": "2.13.0"
 }

src/init-action.ts

@@ -254,6 +254,7 @@ async function run() {
       registriesInput,
       getOptionalInput("config-file"),
       getOptionalInput("db-location"),
+      getOptionalInput("config"),
       getTrapCachingEnabled(),
       // Debug mode is enabled if:
       // - The `init` Action is passed `debug: true`.

src/init.ts

@@ -57,6 +57,7 @@ export async function initConfig(
   registriesInput: string | undefined,
   configFile: string | undefined,
   dbLocation: string | undefined,
+  configInput: string | undefined,
   trapCachingEnabled: boolean,
   debugMode: boolean,
   debugArtifactName: string,
@@ -78,6 +79,7 @@ export async function initConfig(
     registriesInput,
     configFile,
     dbLocation,
+    configInput,
     trapCachingEnabled,
     debugMode,
     debugArtifactName,
@@ -107,7 +109,6 @@ export async function runInit(
   logger: Logger
 ): Promise<TracerConfig | undefined> {
   fs.mkdirSync(config.dbLocation, { recursive: true });
-
   try {
     // When parsing the codeql config in the CLI, we have not yet created the qlconfig file.
     // So, create it now.