Andrew Eisenberg 9b1206e898 Fix a bug in cli config parsing ...

When the config specifies queries in external repositories and no other
queries and cli config parsing is enabled, the analyze job is not able
to find any queries to run and it fails. This PR fixes the problem.

Also add some logging statements when writing a copy of the user config
file.

2023-01-17 20:59:36 -08:00

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